Wall clock time and date at job start Tue Mar 31 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46948 * 2 1 4 4 C 1.46494 * 120.00192 * 277.43897 * 3 2 1 5 5 C 1.50702 * 109.47090 * 269.99741 * 4 3 2 6 6 H 1.08003 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00224 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99882 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99957 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47137 * 89.99513 * 9 7 5 11 11 H 1.48500 * 109.46978 * 209.99685 * 9 7 5 12 12 H 1.48500 * 109.46869 * 329.99239 * 9 7 5 13 13 C 1.34777 * 119.99696 * 97.43668 * 3 2 1 14 14 O 1.21555 * 119.99976 * 185.63965 * 13 3 2 15 15 C 1.47835 * 120.00310 * 5.63389 * 13 3 2 16 16 C 1.39951 * 120.93716 * 135.39069 * 15 13 3 17 17 N 1.32145 * 118.92111 * 179.97438 * 16 15 13 18 18 C 1.31872 * 120.96730 * 0.02562 * 17 16 15 19 19 C 1.50701 * 118.95099 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47152 * 60.00145 * 19 18 17 21 21 C 1.53003 * 109.46956 * 300.00470 * 19 18 17 22 22 C 1.52992 * 109.47371 * 180.02562 * 19 18 17 23 23 N 1.31863 * 122.09865 * 0.28162 * 18 17 16 24 24 C 1.32157 * 120.96483 * 359.43239 * 23 18 17 25 25 H 1.09000 * 109.46819 * 188.81896 * 1 2 3 26 26 H 1.08996 * 109.46788 * 308.80999 * 1 2 3 27 27 H 1.08999 * 109.47429 * 68.81396 * 1 2 3 28 28 H 1.08996 * 109.47066 * 240.00774 * 2 1 3 29 29 H 1.08995 * 109.47751 * 120.00056 * 2 1 3 30 30 H 1.08997 * 109.47323 * 29.99778 * 4 3 2 31 31 H 1.09004 * 109.47306 * 150.00034 * 4 3 2 32 32 H 0.96998 * 119.99810 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.54045 * 359.96623 * 16 15 13 34 34 H 1.09002 * 109.47274 * 300.00079 * 20 19 18 35 35 H 1.08997 * 109.46923 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.46827 * 60.00143 * 20 19 18 37 37 H 1.09006 * 109.47145 * 179.97438 * 21 19 18 38 38 H 1.08999 * 109.46958 * 299.99225 * 21 19 18 39 39 H 1.08994 * 109.47630 * 60.00006 * 21 19 18 40 40 H 1.09000 * 109.47184 * 300.00210 * 22 19 18 41 41 H 1.09002 * 109.47045 * 59.99588 * 22 19 18 42 42 H 1.08996 * 109.47642 * 180.02562 * 22 19 18 43 43 H 1.07995 * 120.53554 * 180.25043 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1076 2.1266 -1.2580 5 6 3.4666 1.9127 -1.8733 6 1 4.1911 1.2840 -1.3770 7 6 3.7846 2.5187 -3.0702 8 7 4.9708 2.3324 -3.6068 9 14 2.5312 3.6056 -3.9288 10 1 2.6889 5.0066 -3.4625 11 1 2.7469 3.5452 -5.3968 12 1 1.1615 3.1288 -3.6097 13 6 2.3854 1.9662 1.1574 14 8 2.6927 3.1422 1.1734 15 6 2.4141 1.1777 2.4076 16 6 3.4904 1.2775 3.2966 17 7 3.4747 0.5548 4.4028 18 6 2.4660 -0.2505 4.6729 19 6 2.4948 -1.0534 5.9479 20 6 2.5608 -0.1048 7.1466 21 6 3.7245 -1.9637 5.9497 22 6 1.2287 -1.9071 6.0418 23 7 1.4353 -0.3793 3.8606 24 6 1.3662 0.3100 2.7352 25 1 -0.3633 -1.0155 0.1576 26 1 -0.3633 0.6441 0.8008 27 1 -0.3634 0.3714 -0.9582 28 1 1.8933 -0.5137 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 1.3383 1.7739 -1.9447 31 1 1.9606 3.1888 -1.0622 32 1 5.1946 2.7590 -4.4487 33 1 4.3204 1.9344 3.0820 34 1 3.4631 0.5031 7.0796 35 1 2.5821 -0.6855 8.0687 36 1 1.6848 0.5438 7.1454 37 1 3.7456 -2.5442 6.8721 38 1 3.6774 -2.6396 5.0958 39 1 4.6268 -1.3559 5.8827 40 1 0.3524 -1.2589 6.0403 41 1 1.1821 -2.5829 5.1878 42 1 1.2493 -2.4875 6.9641 43 1 0.5168 0.2021 2.0770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584164731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:26 Heat of formation + Delta-G solvation = -7.302985 kcal Electronic energy + Delta-G solvation = -23631.654798 eV Core-core repulsion = 20290.474907 eV Total energy + Delta-G solvation = -3341.179891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.60554 -40.67105 -37.67778 -37.31381 -35.14895 -34.77503 -32.93996 -31.84791 -29.74115 -28.24590 -28.17682 -26.42985 -25.52677 -24.56436 -24.07476 -21.20946 -20.58103 -19.16362 -18.96894 -18.33226 -17.78357 -17.21577 -16.33841 -16.24584 -15.87035 -15.81374 -15.26278 -14.94362 -14.73927 -14.63743 -14.45947 -14.03678 -13.88575 -13.52354 -13.23118 -13.19887 -13.10580 -12.83004 -12.60666 -12.54270 -12.44766 -12.32093 -12.11894 -12.03139 -11.92576 -11.83998 -11.81618 -11.76023 -10.99772 -10.84766 -10.55002 -10.40709 -9.58438 -8.35675 -6.42085 -0.60126 -0.15206 1.33352 1.37654 1.45562 1.55618 2.05685 2.30172 2.54707 2.67698 2.91602 2.98727 3.30825 3.35889 3.82024 3.83486 3.94691 4.00793 4.01785 4.24705 4.35587 4.43022 4.59843 4.72244 4.79491 4.81314 4.84288 4.89180 4.90015 4.92971 4.97261 5.01397 5.04741 5.15832 5.30567 5.34620 5.38045 5.41847 5.49203 5.52786 5.71782 6.18433 6.45771 6.59589 6.85146 7.06276 7.24356 8.81116 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003789 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.825604 B = 7388.587532 C = 7710.980911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 N -0.585 5.585 4 C 0.225 3.775 5 C -0.542 4.542 6 H 0.028 0.972 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.234 1.234 13 C 0.558 3.442 14 O -0.578 6.578 15 C -0.244 4.244 16 C 0.193 3.807 17 N -0.519 5.519 18 C 0.329 3.671 19 C -0.005 4.005 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.123 4.123 23 N -0.511 5.511 24 C 0.179 3.821 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.269 0.731 33 H 0.173 0.827 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 -10.773 18.422 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.033 4.033 3 N -0.315 5.315 4 C 0.104 3.896 5 C -0.580 4.580 6 H 0.046 0.954 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.157 1.157 13 C 0.344 3.656 14 O -0.459 6.459 15 C -0.252 4.252 16 C 0.026 3.974 17 N -0.232 5.232 18 C 0.063 3.937 19 C -0.007 4.007 20 C -0.190 4.190 21 C -0.191 4.191 22 C -0.181 4.181 23 N -0.224 5.224 24 C 0.012 3.988 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.190 0.810 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.225 -10.686 19.087 24.587 hybrid contribution 0.494 1.442 -1.898 2.434 sum -10.731 -9.244 17.189 22.272 Atomic orbital electron populations 1.22332 0.92974 1.04403 1.03038 1.21999 0.96374 0.81228 1.03685 1.47939 1.62031 1.15003 1.06500 1.19414 0.95964 0.92621 0.81635 1.21532 0.99577 1.30480 1.06421 0.95359 1.25840 0.97512 0.97413 0.97716 1.70047 1.22727 1.45539 1.20054 0.85728 0.80607 0.79015 0.77718 1.20148 1.20102 1.15663 1.18233 0.77265 0.86366 0.83695 1.90737 1.50726 1.17710 1.86723 1.21671 1.01232 1.03780 0.98502 1.23436 0.95689 0.91698 0.86562 1.68332 1.28007 1.08160 1.18707 1.24096 0.84059 0.89861 0.95666 1.19677 0.99159 0.94396 0.87457 1.21836 1.01871 0.98771 0.96556 1.21841 0.95527 0.98484 1.03236 1.21694 0.94639 0.99014 1.02708 1.68470 1.25994 1.23914 1.04059 1.24436 0.96468 0.85680 0.92209 0.87739 0.91705 0.91567 0.90232 0.89977 0.92374 0.95648 0.92187 0.81027 0.92544 0.88845 0.93282 0.88848 0.93295 0.92591 0.92547 0.92459 0.89857 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 9.13 71.98 0.66 -2.82 16 2 C 0.09 2.60 5.60 86.38 0.48 3.09 16 3 N -0.59 -23.38 2.46 -829.58 -2.04 -25.42 16 4 C 0.23 10.64 4.29 85.63 0.37 11.01 16 5 C -0.54 -31.34 9.94 25.60 0.25 -31.09 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 7 C 0.01 0.79 5.47 84.65 0.46 1.25 16 8 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 9 Si 0.95 43.38 27.47 68.60 1.88 45.27 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.23 -9.44 6.54 99.48 0.65 -8.79 16 13 C 0.56 23.10 7.33 86.78 0.64 23.74 16 14 O -0.58 -28.99 16.56 -3.89 -0.06 -29.06 16 15 C -0.24 -8.06 5.12 -19.91 -0.10 -8.17 16 16 C 0.19 6.20 11.01 85.06 0.94 7.14 16 17 N -0.52 -15.03 9.77 -186.80 -1.82 -16.86 16 18 C 0.33 8.39 6.25 138.71 0.87 9.26 16 19 C 0.00 -0.09 0.92 -52.93 -0.05 -0.14 16 20 C -0.13 -2.11 8.37 71.98 0.60 -1.51 16 21 C -0.13 -2.17 8.36 71.98 0.60 -1.56 16 22 C -0.12 -1.83 7.66 71.98 0.55 -1.28 16 23 N -0.51 -12.96 8.98 -186.80 -1.68 -14.64 16 24 C 0.18 4.72 8.72 85.06 0.74 5.46 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.25 6.39 -2.39 -0.02 1.24 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16 29 H 0.08 2.18 5.06 -2.39 -0.01 2.17 16 30 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 31 H 0.03 1.29 6.78 -2.38 -0.02 1.27 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.17 5.53 8.06 -2.91 -0.02 5.50 16 34 H 0.06 1.04 8.01 -2.39 -0.02 1.02 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.06 8.01 -2.39 -0.02 1.04 16 40 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 41 H 0.06 0.93 8.03 -2.39 -0.02 0.91 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.20 4.36 3.74 -2.91 -0.01 4.35 16 Total: -1.00 -74.69 348.84 4.53 -70.16 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.94 Total: 14.94 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.01 Total: 14.39 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.24 Total: -115.70 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.06 Total: -29.06 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Total: -74.69 4.53 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584164731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.855 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds