Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39996 * 126.03759 * 2 1 4 4 C 1.31081 * 108.42303 * 180.02562 * 3 2 1 5 5 C 1.39733 * 108.22383 * 0.02562 * 4 3 2 6 6 C 1.35200 * 126.04313 * 180.02562 * 2 1 3 7 7 N 1.39468 * 126.20531 * 359.96831 * 6 2 1 8 8 C 1.34782 * 120.00238 * 206.39300 * 7 6 2 9 9 O 1.21290 * 119.99504 * 5.81412 * 8 7 6 10 10 C 1.50697 * 120.00184 * 185.81433 * 8 7 6 11 11 C 1.52999 * 109.46995 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46825 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46825 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46995 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99954 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00402 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99438 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00643 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46778 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46909 * 120.00037 * 18 16 14 21 21 H 1.48493 * 109.47551 * 240.00334 * 18 16 14 22 22 C 1.51274 * 109.59889 * 179.97438 * 5 4 3 23 23 C 1.54354 * 105.19794 * 342.78517 * 22 5 4 24 24 C 1.51344 * 142.26967 * 180.02562 * 4 3 2 25 25 H 1.08996 * 109.47353 * 95.78446 * 1 2 3 26 26 H 1.09001 * 109.46788 * 215.77796 * 1 2 3 27 27 H 1.08994 * 109.47265 * 335.77701 * 1 2 3 28 28 H 0.97006 * 119.99909 * 26.40107 * 7 6 2 29 29 H 1.09005 * 109.47280 * 300.00584 * 10 8 7 30 30 H 1.09004 * 109.46924 * 60.00079 * 10 8 7 31 31 H 1.08996 * 109.47346 * 299.99766 * 11 10 8 32 32 H 1.08998 * 109.46841 * 60.00377 * 11 10 8 33 33 H 1.08996 * 109.46917 * 299.99966 * 12 11 10 34 34 H 1.09004 * 109.47059 * 60.00036 * 12 11 10 35 35 H 1.09000 * 109.47087 * 300.00132 * 13 12 11 36 36 H 1.09004 * 109.47272 * 60.00167 * 13 12 11 37 37 H 0.97006 * 119.99847 * 180.02562 * 17 16 14 38 38 H 1.08995 * 110.29756 * 223.85791 * 22 5 4 39 39 H 1.08998 * 110.38074 * 101.76090 * 22 5 4 40 40 H 1.08994 * 110.77456 * 268.21959 * 23 22 5 41 41 H 1.08998 * 110.76851 * 144.80428 * 23 22 5 42 42 H 1.09001 * 110.29554 * 316.16334 * 24 4 3 43 43 H 1.09008 * 110.29126 * 78.29124 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2886 1.1320 0.0000 4 6 3.5380 0.7354 -0.0006 5 6 3.5529 -0.6619 -0.0015 6 6 2.2605 -1.0932 -0.0005 7 7 1.8353 -2.4215 -0.0005 8 6 2.6258 -3.3822 0.5179 9 8 3.6583 -3.0808 1.0785 10 6 2.2269 -4.8307 0.4010 11 6 3.2890 -5.7075 1.0672 12 6 2.8843 -7.1783 0.9479 13 6 3.9461 -8.0551 1.6148 14 6 3.5472 -9.5036 1.4978 15 1 2.6284 -9.7719 0.9975 16 6 4.3556 -10.4863 2.0286 17 7 5.4746 -10.1595 2.6373 18 14 3.8608 -12.2818 1.8843 19 1 2.5678 -12.3823 1.1606 20 1 4.9059 -13.0245 1.1350 21 1 3.7155 -12.8659 3.2417 22 6 4.9833 -1.1541 -0.0028 23 6 5.8286 0.0599 -0.4434 24 6 4.9591 1.2559 -0.0005 25 1 -0.3634 -0.1036 -1.0224 26 1 -0.3633 -0.8338 0.6008 27 1 -0.3633 0.9371 0.4216 28 1 0.9706 -2.6539 -0.3737 29 1 1.2674 -4.9843 0.8948 30 1 2.1410 -5.1000 -0.6518 31 1 4.2487 -5.5540 0.5738 32 1 3.3745 -5.4381 2.1199 33 1 1.9245 -7.3321 1.4411 34 1 2.7991 -7.4474 -0.1049 35 1 4.9061 -7.9012 1.1220 36 1 4.0308 -7.7858 2.6676 37 1 6.0436 -10.8509 3.0104 38 1 5.1005 -1.9737 -0.7118 39 1 5.2751 -1.4752 0.9971 40 1 5.9679 0.0622 -1.5244 41 1 6.7894 0.0691 0.0713 42 1 5.0604 2.0788 -0.7081 43 1 5.2430 1.5800 1.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588307036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = 28.288750 kcal Electronic energy + Delta-G solvation = -22608.195430 eV Core-core repulsion = 19268.558912 eV Total energy + Delta-G solvation = -3339.636517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89554 -39.66569 -36.77946 -35.14573 -34.68014 -32.68405 -32.19623 -30.34093 -29.19892 -26.94975 -26.41922 -25.66344 -22.97151 -21.74569 -21.14162 -20.14122 -19.99171 -19.28909 -17.51444 -16.92739 -16.34951 -16.15050 -15.64618 -15.33262 -15.03477 -14.50371 -14.23355 -14.06181 -13.88961 -12.99964 -12.96890 -12.87789 -12.65340 -12.57592 -12.34662 -11.86426 -11.76465 -11.64997 -11.19307 -11.08160 -11.01722 -10.78468 -10.60087 -10.51047 -10.47003 -10.34896 -9.97626 -9.65737 -9.27842 -9.00867 -8.92298 -8.32792 -8.03127 -5.97391 -3.99942 1.54359 1.92559 2.45199 2.84047 2.92354 3.31688 3.39067 3.42636 3.81227 4.46651 4.53297 4.60842 4.74861 4.76775 4.97989 5.02787 5.14425 5.17663 5.23528 5.25972 5.38200 5.45587 5.59311 5.70782 5.73553 5.79230 5.93869 6.05808 6.08199 6.16729 6.21605 6.34446 6.47151 6.56015 6.77485 6.86512 6.95556 7.03628 7.16479 7.63207 7.71768 7.86867 8.00340 8.03867 8.45370 9.07939 9.63948 11.13935 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028229 B = 0.002617 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.658562 B =10696.954922 C =11536.095354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.390 5.390 3 N -0.278 5.278 4 C 0.062 3.938 5 C -0.248 4.248 6 C 0.320 3.680 7 N -0.661 5.661 8 C 0.515 3.485 9 O -0.492 6.492 10 C -0.132 4.132 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.022 4.022 23 C -0.121 4.121 24 C -0.029 4.029 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.409 0.591 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 22.558 -7.836 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.177 5.177 3 N -0.100 5.100 4 C -0.105 4.105 5 C -0.262 4.262 6 C 0.102 3.898 7 N -0.311 5.311 8 C 0.303 3.697 9 O -0.363 6.363 10 C -0.173 4.173 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.061 4.061 23 C -0.159 4.159 24 C -0.069 4.069 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.244 0.756 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.338 23.607 -7.323 26.085 hybrid contribution -0.614 -1.860 -0.215 1.970 sum -8.952 21.747 -7.538 24.696 Atomic orbital electron populations 1.21801 0.74214 1.04866 1.03012 1.48480 1.06128 1.01882 1.61211 1.77143 1.00445 1.04599 1.27815 1.23102 0.93957 0.94908 0.98501 1.20203 0.93611 0.94539 1.17847 1.16993 0.89751 0.80626 1.02477 1.43186 1.22951 1.03063 1.61939 1.21373 0.83531 0.87747 0.77073 1.90761 1.23604 1.82813 1.39089 1.21813 1.02597 0.88805 1.04040 1.21488 0.96936 0.94975 1.00774 1.21651 1.00474 0.92240 1.00413 1.19095 0.93476 0.93382 0.95775 1.21310 1.06677 0.91734 1.36147 0.92719 1.25043 0.95062 0.99076 0.95396 1.69984 1.12507 1.32987 1.37923 0.86561 0.78497 0.85351 0.77725 1.19794 1.21033 1.21045 1.20270 0.87284 0.96229 1.02279 1.22423 0.98229 0.93876 1.01350 1.20533 0.85247 0.98430 1.02645 0.90836 0.90024 0.88663 0.75586 0.88787 0.88588 0.91514 0.91613 0.93442 0.93385 0.96535 0.96579 0.93074 0.92035 0.89889 0.91083 0.90052 0.90321 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.29 59.85 0.68 1.34 16 2 N -0.39 -4.54 4.02 -67.16 -0.27 -4.81 16 3 N -0.28 -3.79 12.57 33.84 0.43 -3.37 16 4 C 0.06 0.82 8.09 -82.04 -0.66 0.15 16 5 C -0.25 -3.46 5.84 -104.50 -0.61 -4.07 16 6 C 0.32 4.10 7.44 -153.17 -1.14 2.96 16 7 N -0.66 -6.93 5.34 -11.45 -0.06 -7.00 16 8 C 0.51 6.70 7.72 -10.98 -0.08 6.62 16 9 O -0.49 -8.21 12.24 5.55 0.07 -8.15 16 10 C -0.13 -1.57 5.70 -27.89 -0.16 -1.72 16 11 C -0.10 -1.72 4.50 -26.73 -0.12 -1.84 16 12 C -0.11 -2.17 5.15 -26.73 -0.14 -2.30 16 13 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.02 -0.29 4.95 -26.89 -0.13 -0.42 16 23 C -0.12 -1.14 7.06 -25.31 -0.18 -1.32 16 24 C -0.03 -0.28 6.77 -26.86 -0.18 -0.46 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.41 2.70 8.71 -40.82 -0.36 2.34 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.08 1.21 7.30 -51.93 -0.38 0.83 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -35.70 354.55 -9.10 -44.79 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.03 Total: -2.71 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -3.28 Total: -14.28 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.83 Total: -41.65 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.70 -9.10 -44.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588307036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.079 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds