Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39996 * 126.03759 * 2 1 4 4 C 1.31081 * 108.42303 * 180.02562 * 3 2 1 5 5 C 1.39733 * 108.22383 * 0.02562 * 4 3 2 6 6 C 1.35200 * 126.04313 * 180.02562 * 2 1 3 7 7 N 1.39468 * 126.20531 * 359.96831 * 6 2 1 8 8 C 1.34782 * 120.00238 * 206.39300 * 7 6 2 9 9 O 1.21290 * 119.99504 * 5.81412 * 8 7 6 10 10 C 1.50697 * 120.00184 * 185.81433 * 8 7 6 11 11 C 1.52999 * 109.46995 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46825 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46825 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46995 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99954 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00402 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99438 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00643 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46778 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46909 * 120.00037 * 18 16 14 21 21 H 1.48493 * 109.47551 * 240.00334 * 18 16 14 22 22 C 1.51274 * 109.59889 * 179.97438 * 5 4 3 23 23 C 1.54354 * 105.19794 * 342.78517 * 22 5 4 24 24 C 1.51344 * 142.26967 * 180.02562 * 4 3 2 25 25 H 1.08996 * 109.47353 * 95.78446 * 1 2 3 26 26 H 1.09001 * 109.46788 * 215.77796 * 1 2 3 27 27 H 1.08994 * 109.47265 * 335.77701 * 1 2 3 28 28 H 0.97006 * 119.99909 * 26.40107 * 7 6 2 29 29 H 1.09005 * 109.47280 * 300.00584 * 10 8 7 30 30 H 1.09004 * 109.46924 * 60.00079 * 10 8 7 31 31 H 1.08996 * 109.47346 * 299.99766 * 11 10 8 32 32 H 1.08998 * 109.46841 * 60.00377 * 11 10 8 33 33 H 1.08996 * 109.46917 * 299.99966 * 12 11 10 34 34 H 1.09004 * 109.47059 * 60.00036 * 12 11 10 35 35 H 1.09000 * 109.47087 * 300.00132 * 13 12 11 36 36 H 1.09004 * 109.47272 * 60.00167 * 13 12 11 37 37 H 0.97006 * 119.99847 * 180.02562 * 17 16 14 38 38 H 1.08995 * 110.29756 * 223.85791 * 22 5 4 39 39 H 1.08998 * 110.38074 * 101.76090 * 22 5 4 40 40 H 1.08994 * 110.77456 * 268.21959 * 23 22 5 41 41 H 1.08998 * 110.76851 * 144.80428 * 23 22 5 42 42 H 1.09001 * 110.29554 * 316.16334 * 24 4 3 43 43 H 1.09008 * 110.29126 * 78.29124 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2886 1.1320 0.0000 4 6 3.5380 0.7354 -0.0006 5 6 3.5529 -0.6619 -0.0015 6 6 2.2605 -1.0932 -0.0005 7 7 1.8353 -2.4215 -0.0005 8 6 2.6258 -3.3822 0.5179 9 8 3.6583 -3.0808 1.0785 10 6 2.2269 -4.8307 0.4010 11 6 3.2890 -5.7075 1.0672 12 6 2.8843 -7.1783 0.9479 13 6 3.9461 -8.0551 1.6148 14 6 3.5472 -9.5036 1.4978 15 1 2.6284 -9.7719 0.9975 16 6 4.3556 -10.4863 2.0286 17 7 5.4746 -10.1595 2.6373 18 14 3.8608 -12.2818 1.8843 19 1 2.5678 -12.3823 1.1606 20 1 4.9059 -13.0245 1.1350 21 1 3.7155 -12.8659 3.2417 22 6 4.9833 -1.1541 -0.0028 23 6 5.8286 0.0599 -0.4434 24 6 4.9591 1.2559 -0.0005 25 1 -0.3634 -0.1036 -1.0224 26 1 -0.3633 -0.8338 0.6008 27 1 -0.3633 0.9371 0.4216 28 1 0.9706 -2.6539 -0.3737 29 1 1.2674 -4.9843 0.8948 30 1 2.1410 -5.1000 -0.6518 31 1 4.2487 -5.5540 0.5738 32 1 3.3745 -5.4381 2.1199 33 1 1.9245 -7.3321 1.4411 34 1 2.7991 -7.4474 -0.1049 35 1 4.9061 -7.9012 1.1220 36 1 4.0308 -7.7858 2.6676 37 1 6.0436 -10.8509 3.0104 38 1 5.1005 -1.9737 -0.7118 39 1 5.2751 -1.4752 0.9971 40 1 5.9679 0.0622 -1.5244 41 1 6.7894 0.0691 0.0713 42 1 5.0604 2.0788 -0.7081 43 1 5.2430 1.5800 1.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588307036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = 5.960852 kcal Electronic energy + Delta-G solvation = -22609.163640 eV Core-core repulsion = 19268.558912 eV Total energy + Delta-G solvation = -3340.604728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.80567 -40.70720 -37.62689 -36.69830 -35.75980 -34.61650 -32.96301 -31.77315 -30.37325 -28.01740 -27.25645 -27.12576 -24.56541 -22.64764 -22.35281 -21.62428 -20.98475 -20.25574 -18.47554 -18.29584 -17.93074 -17.26141 -16.70743 -16.51638 -16.15781 -15.82343 -15.44487 -15.24585 -14.76864 -14.53767 -13.88798 -13.81154 -13.67838 -13.56143 -13.55518 -13.34093 -13.27260 -12.85394 -12.65743 -12.31524 -12.16540 -12.14851 -12.07386 -11.92517 -11.64508 -11.35540 -11.33875 -11.30016 -11.14392 -10.87805 -10.54432 -9.77785 -9.00627 -8.17869 -6.29573 0.58787 1.09163 1.41343 1.41842 1.47850 1.55162 1.86884 2.10076 2.42633 2.98109 3.15246 3.60966 3.92716 4.00988 4.02076 4.15613 4.21912 4.34747 4.35716 4.37542 4.55800 4.59347 4.68195 4.69765 4.81225 4.84333 4.87898 4.90664 5.01908 5.08895 5.19533 5.20438 5.24739 5.35119 5.40380 5.43123 5.58945 5.63033 5.80670 5.90359 6.01138 6.20552 6.27051 6.71246 6.89641 7.06703 7.40153 8.94494 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028229 B = 0.002617 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.658562 B =10696.954922 C =11536.095354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.386 5.386 3 N -0.302 5.302 4 C 0.050 3.950 5 C -0.283 4.283 6 C 0.310 3.690 7 N -0.641 5.641 8 C 0.516 3.484 9 O -0.537 6.537 10 C -0.118 4.118 11 C -0.096 4.096 12 C -0.096 4.096 13 C 0.018 3.982 14 C -0.540 4.540 15 H 0.066 0.934 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.020 4.020 23 C -0.112 4.112 24 C -0.028 4.028 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.430 0.570 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.062 0.938 35 H -0.015 1.015 36 H -0.016 1.016 37 H 0.262 0.738 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 22.500 -9.211 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.173 5.173 3 N -0.125 5.125 4 C -0.116 4.116 5 C -0.297 4.297 6 C 0.090 3.910 7 N -0.293 5.293 8 C 0.305 3.695 9 O -0.410 6.410 10 C -0.158 4.158 11 C -0.134 4.134 12 C -0.133 4.133 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.059 4.059 23 C -0.149 4.149 24 C -0.067 4.067 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.269 0.731 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.846 23.570 -8.727 27.374 hybrid contribution 0.117 -1.827 0.235 1.845 sum -10.729 21.744 -8.492 25.690 Atomic orbital electron populations 1.22239 0.71477 1.06197 1.05050 1.48835 1.07575 1.00909 1.59989 1.77052 1.00937 1.05872 1.28661 1.23635 0.94931 0.94914 0.98115 1.20582 0.94417 0.95425 1.19284 1.17187 0.89993 0.81583 1.02187 1.42905 1.23450 1.01858 1.61096 1.21567 0.83021 0.88522 0.76438 1.90773 1.25600 1.83429 1.41212 1.21672 1.01824 0.86704 1.05576 1.21262 0.97911 0.94240 1.00030 1.21441 0.98697 0.92680 1.00491 1.19059 0.94275 0.94349 0.94211 1.21795 1.07068 0.92919 1.35979 0.91564 1.26075 0.94933 1.04509 0.94894 1.70138 1.13899 1.34777 1.39024 0.85362 0.78734 0.78780 0.77939 1.18063 1.20558 1.20578 1.20198 0.88107 0.97189 1.00391 1.22419 0.98318 0.92080 1.02118 1.20658 0.83413 0.98852 1.03735 0.88538 0.87934 0.88032 0.73085 0.85488 0.85631 0.93509 0.93626 0.91949 0.91945 0.99658 0.99724 0.92897 0.93670 0.92502 0.90059 0.88419 0.88342 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 11.29 127.77 1.44 2.39 16 2 N -0.39 -8.45 4.02 -366.40 -1.47 -9.92 16 3 N -0.30 -8.04 12.57 -46.84 -0.59 -8.63 16 4 C 0.05 1.31 8.09 43.24 0.35 1.66 16 5 C -0.28 -7.98 5.84 -19.79 -0.12 -8.10 16 6 C 0.31 7.68 7.44 131.37 0.98 8.66 16 7 N -0.64 -12.24 5.34 -308.51 -1.65 -13.89 16 8 C 0.52 12.90 7.72 87.66 0.68 13.58 16 9 O -0.54 -18.45 12.24 -3.06 -0.04 -18.49 16 10 C -0.12 -2.49 5.70 29.85 0.17 -2.32 16 11 C -0.10 -3.19 4.50 30.60 0.14 -3.05 16 12 C -0.10 -3.68 5.15 30.60 0.16 -3.52 16 13 C 0.02 0.97 4.97 29.85 0.15 1.12 16 14 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 17 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 18 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.02 -0.55 4.95 30.49 0.15 -0.40 16 23 C -0.11 -2.06 7.06 31.51 0.22 -1.84 16 24 C -0.03 -0.51 6.77 30.51 0.21 -0.30 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.43 4.25 8.71 -92.70 -0.81 3.44 16 29 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 38 H 0.04 1.30 8.08 -2.39 -0.02 1.28 16 39 H 0.06 1.79 7.30 -2.39 -0.02 1.77 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -81.08 354.55 3.98 -77.11 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.19 Total: 8.27 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 5.22 Total: -22.58 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -3.42 Total: -90.63 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.49 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -81.08 3.98 -77.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588307036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.067 kcal (2) G-P(sol) polarization free energy of solvation -81.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds