Wall clock time and date at job start Tue Mar 31 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00163 * 2 1 4 4 C 1.39028 * 120.00300 * 180.02562 * 2 1 3 5 5 C 1.38885 * 119.66538 * 4.99788 * 4 2 1 6 6 C 1.39053 * 119.01191 * 180.02562 * 5 4 2 7 7 N 1.39566 * 120.82070 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99829 * 145.06407 * 7 6 5 9 9 O 1.21280 * 120.00103 * 4.67340 * 8 7 6 10 10 C 1.50701 * 119.99689 * 184.67772 * 8 7 6 11 11 C 1.52998 * 109.47014 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47397 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47589 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47392 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99982 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99954 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00063 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47274 * 90.00087 * 18 16 14 20 20 H 1.48502 * 109.47394 * 209.99568 * 18 16 14 21 21 H 1.48504 * 109.47252 * 329.99800 * 18 16 14 22 22 C 1.39617 * 118.36150 * 0.02562 * 6 5 4 23 23 C 1.37779 * 119.24246 * 359.97438 * 22 6 5 24 24 N 1.32069 * 120.93081 * 359.72785 * 23 22 6 25 25 H 1.08998 * 109.47104 * 90.00217 * 1 2 3 26 26 H 1.09000 * 109.47327 * 329.99699 * 1 2 3 27 27 H 1.08998 * 109.46889 * 209.99373 * 1 2 3 28 28 H 1.09000 * 109.46830 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47404 * 120.00043 * 3 2 1 30 30 H 1.08999 * 109.47534 * 240.00392 * 3 2 1 31 31 H 1.07995 * 120.50078 * 0.02562 * 5 4 2 32 32 H 0.96996 * 119.99885 * 325.06161 * 7 6 5 33 33 H 1.08993 * 109.47380 * 299.99906 * 10 8 7 34 34 H 1.09001 * 109.47352 * 59.99995 * 10 8 7 35 35 H 1.08993 * 109.47269 * 300.00340 * 11 10 8 36 36 H 1.09001 * 109.46767 * 60.00002 * 11 10 8 37 37 H 1.09009 * 109.46806 * 300.00478 * 12 11 10 38 38 H 1.09003 * 109.46861 * 59.99801 * 12 11 10 39 39 H 1.09007 * 109.46520 * 299.99971 * 13 12 11 40 40 H 1.09001 * 109.47098 * 59.99634 * 13 12 11 41 41 H 0.96997 * 119.99534 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.38360 * 180.02562 * 22 6 5 43 43 H 1.08005 * 119.54003 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4628 -2.4004 -0.1062 6 6 2.1717 -3.5966 -0.1048 7 7 1.5091 -4.8206 -0.2085 8 6 2.0788 -5.8404 -0.8810 9 8 3.2020 -5.7229 -1.3231 10 6 1.3199 -7.1265 -1.0835 11 6 2.1861 -8.1111 -1.8716 12 6 1.4155 -9.4166 -2.0779 13 6 2.2819 -10.4014 -2.8655 14 6 1.5227 -11.6871 -3.0691 15 1 0.5223 -11.7915 -2.6757 16 6 2.1051 -12.7300 -3.7576 17 7 1.4426 -13.8523 -3.9349 18 14 3.8350 -12.5491 -4.4386 19 1 4.8175 -12.9999 -3.4204 20 1 3.9746 -13.3787 -5.6624 21 1 4.0883 -11.1249 -4.7746 22 6 3.5626 -3.5432 0.0040 23 6 4.1832 -2.3172 0.1051 24 7 3.4816 -1.1983 0.0949 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5137 28 1 1.4892 2.0972 0.0005 29 1 2.8242 1.3265 0.8900 30 1 2.8242 1.3265 -0.8900 31 1 0.3860 -2.4017 -0.1882 32 1 0.6388 -4.9373 0.2034 33 1 1.0699 -7.5574 -0.1141 34 1 0.4037 -6.9244 -1.6384 35 1 2.4358 -7.6800 -2.8411 36 1 3.1025 -8.3133 -1.3171 37 1 1.1655 -9.8479 -1.1084 38 1 0.4993 -9.2140 -2.6325 39 1 2.5323 -9.9703 -3.8348 40 1 3.1979 -10.6039 -2.3104 41 1 1.8525 -14.5861 -4.4190 42 1 4.1456 -4.4523 0.0080 43 1 5.2589 -2.2702 0.1890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588631875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:10 Heat of formation + Delta-G solvation = -2.691282 kcal Electronic energy + Delta-G solvation = -21914.532471 eV Core-core repulsion = 18573.552558 eV Total energy + Delta-G solvation = -3340.979912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00379 -39.62339 -36.87163 -35.44873 -34.98163 -32.66373 -31.39734 -30.65465 -29.93001 -28.46525 -26.18386 -25.52240 -23.36152 -22.74132 -21.37798 -20.31018 -20.06157 -18.28977 -17.38426 -16.64498 -16.45394 -16.11441 -15.90976 -15.60845 -15.54005 -14.54416 -14.46638 -14.16722 -14.08507 -13.85379 -13.55613 -12.98260 -12.68713 -12.66753 -12.54572 -12.46431 -12.17050 -12.06506 -11.78358 -11.17896 -11.06247 -10.78707 -10.58040 -10.29490 -10.06528 -9.87835 -9.68228 -9.60912 -9.39986 -9.13876 -8.87754 -8.50428 -7.83639 -6.01661 -3.99298 1.01877 1.26852 2.45349 2.56786 2.86034 3.34611 3.41830 3.47520 3.75889 4.31816 4.49094 4.53288 4.61270 4.78639 4.88642 4.97966 5.02160 5.10686 5.17900 5.19214 5.23900 5.28973 5.31820 5.33094 5.50782 5.66222 5.67204 5.95651 5.98107 6.04256 6.08941 6.35084 6.52185 6.62107 6.63103 6.77019 6.95549 7.05910 7.12431 7.35589 7.48438 7.83277 7.93262 7.99086 8.56783 9.03103 9.61607 11.11758 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.002242 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.681335 B =12487.116612 C =12932.068188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.621 5.621 3 C 0.108 3.892 4 C 0.414 3.586 5 C -0.271 4.271 6 C 0.233 3.767 7 N -0.678 5.678 8 C 0.514 3.486 9 O -0.509 6.509 10 C -0.137 4.137 11 C -0.107 4.107 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.232 4.232 23 C 0.161 3.839 24 N -0.553 5.553 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.413 0.587 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.147 0.853 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 30.022 11.341 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.336 5.336 3 C -0.035 4.035 4 C 0.180 3.820 5 C -0.298 4.298 6 C 0.129 3.871 7 N -0.324 5.324 8 C 0.303 3.697 9 O -0.382 6.382 10 C -0.177 4.177 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.256 4.256 23 C 0.004 3.996 24 N -0.272 5.272 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.249 0.751 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.165 0.835 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.376 30.802 10.953 32.720 hybrid contribution -0.109 -0.897 -0.272 0.943 sum -1.485 29.905 10.682 31.790 Atomic orbital electron populations 1.21702 0.78537 1.02895 1.01516 1.46137 1.04955 1.03046 1.79507 1.21469 0.96322 0.83588 1.02093 1.17956 0.88247 0.85189 0.90646 1.21054 1.00837 0.90601 1.17353 1.17728 0.91900 0.84872 0.92559 1.43678 1.23128 1.10662 1.54944 1.21378 0.87145 0.85052 0.76167 1.90719 1.18592 1.81375 1.47488 1.21815 1.00337 0.91925 1.03604 1.21513 0.98293 0.94901 0.99835 1.21478 0.98715 0.93343 1.00478 1.19577 0.95572 0.94940 0.95212 1.21173 1.02714 0.96692 1.35204 0.91108 1.25050 0.97759 0.95143 0.95707 1.69923 1.37781 1.04432 1.42329 0.86770 0.85192 0.78592 0.78713 1.20304 1.21451 1.18908 1.22011 0.93740 1.00686 1.09204 1.22297 0.99540 0.86266 0.91470 1.67186 1.05875 1.32058 1.22105 0.93025 0.91059 0.91232 0.91440 0.92449 0.92641 0.84926 0.75085 0.88462 0.88492 0.91648 0.91604 0.92776 0.92770 0.96605 0.97020 0.92808 0.83534 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 10.02 59.85 0.60 1.10 16 2 N -0.62 -5.26 3.39 -189.71 -0.64 -5.90 16 3 C 0.11 0.75 10.18 59.85 0.61 1.36 16 4 C 0.41 4.52 7.37 -155.01 -1.14 3.38 16 5 C -0.27 -2.71 9.13 -39.04 -0.36 -3.07 16 6 C 0.23 2.63 6.33 -83.52 -0.53 2.10 16 7 N -0.68 -6.59 5.34 -9.73 -0.05 -6.64 16 8 C 0.51 6.44 7.69 -10.98 -0.08 6.36 16 9 O -0.51 -8.34 13.47 5.56 0.07 -8.26 16 10 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 11 C -0.11 -1.71 4.50 -26.73 -0.12 -1.83 16 12 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16 13 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 14 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 15 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 18 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 22 C -0.23 -2.84 8.77 -39.23 -0.34 -3.19 16 23 C 0.16 1.82 11.16 -17.62 -0.20 1.62 16 24 N -0.55 -6.63 9.57 -12.51 -0.12 -6.75 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.24 7.92 -51.93 -0.41 -0.17 16 27 H 0.07 0.32 6.39 -51.93 -0.33 -0.02 16 28 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 1.00 6.26 -52.49 -0.33 0.67 16 32 H 0.41 2.53 8.83 -40.82 -0.36 2.17 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.15 1.96 6.32 -52.49 -0.33 1.63 16 43 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -35.61 354.97 -8.43 -44.05 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.74 Total: -1.96 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.40 Total: -10.00 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.04 Total: -46.76 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.07 Total: -8.26 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.61 -8.43 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588631875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.356 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds