Wall clock time and date at job start Tue Mar 31 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00163 * 2 1 4 4 C 1.39028 * 120.00300 * 180.02562 * 2 1 3 5 5 C 1.38885 * 119.66538 * 4.99788 * 4 2 1 6 6 C 1.39053 * 119.01191 * 180.02562 * 5 4 2 7 7 N 1.39566 * 120.82070 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99829 * 145.06407 * 7 6 5 9 9 O 1.21280 * 120.00103 * 4.67340 * 8 7 6 10 10 C 1.50701 * 119.99689 * 184.67772 * 8 7 6 11 11 C 1.52998 * 109.47014 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47397 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47589 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47392 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99982 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99954 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00063 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47274 * 90.00087 * 18 16 14 20 20 H 1.48502 * 109.47394 * 209.99568 * 18 16 14 21 21 H 1.48504 * 109.47252 * 329.99800 * 18 16 14 22 22 C 1.39617 * 118.36150 * 0.02562 * 6 5 4 23 23 C 1.37779 * 119.24246 * 359.97438 * 22 6 5 24 24 N 1.32069 * 120.93081 * 359.72785 * 23 22 6 25 25 H 1.08998 * 109.47104 * 90.00217 * 1 2 3 26 26 H 1.09000 * 109.47327 * 329.99699 * 1 2 3 27 27 H 1.08998 * 109.46889 * 209.99373 * 1 2 3 28 28 H 1.09000 * 109.46830 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47404 * 120.00043 * 3 2 1 30 30 H 1.08999 * 109.47534 * 240.00392 * 3 2 1 31 31 H 1.07995 * 120.50078 * 0.02562 * 5 4 2 32 32 H 0.96996 * 119.99885 * 325.06161 * 7 6 5 33 33 H 1.08993 * 109.47380 * 299.99906 * 10 8 7 34 34 H 1.09001 * 109.47352 * 59.99995 * 10 8 7 35 35 H 1.08993 * 109.47269 * 300.00340 * 11 10 8 36 36 H 1.09001 * 109.46767 * 60.00002 * 11 10 8 37 37 H 1.09009 * 109.46806 * 300.00478 * 12 11 10 38 38 H 1.09003 * 109.46861 * 59.99801 * 12 11 10 39 39 H 1.09007 * 109.46520 * 299.99971 * 13 12 11 40 40 H 1.09001 * 109.47098 * 59.99634 * 13 12 11 41 41 H 0.96997 * 119.99534 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.38360 * 180.02562 * 22 6 5 43 43 H 1.08005 * 119.54003 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4628 -2.4004 -0.1062 6 6 2.1717 -3.5966 -0.1048 7 7 1.5091 -4.8206 -0.2085 8 6 2.0788 -5.8404 -0.8810 9 8 3.2020 -5.7229 -1.3231 10 6 1.3199 -7.1265 -1.0835 11 6 2.1861 -8.1111 -1.8716 12 6 1.4155 -9.4166 -2.0779 13 6 2.2819 -10.4014 -2.8655 14 6 1.5227 -11.6871 -3.0691 15 1 0.5223 -11.7915 -2.6757 16 6 2.1051 -12.7300 -3.7576 17 7 1.4426 -13.8523 -3.9349 18 14 3.8350 -12.5491 -4.4386 19 1 4.8175 -12.9999 -3.4204 20 1 3.9746 -13.3787 -5.6624 21 1 4.0883 -11.1249 -4.7746 22 6 3.5626 -3.5432 0.0040 23 6 4.1832 -2.3172 0.1051 24 7 3.4816 -1.1983 0.0949 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5137 28 1 1.4892 2.0972 0.0005 29 1 2.8242 1.3265 0.8900 30 1 2.8242 1.3265 -0.8900 31 1 0.3860 -2.4017 -0.1882 32 1 0.6388 -4.9373 0.2034 33 1 1.0699 -7.5574 -0.1141 34 1 0.4037 -6.9244 -1.6384 35 1 2.4358 -7.6800 -2.8411 36 1 3.1025 -8.3133 -1.3171 37 1 1.1655 -9.8479 -1.1084 38 1 0.4993 -9.2140 -2.6325 39 1 2.5323 -9.9703 -3.8348 40 1 3.1979 -10.6039 -2.3104 41 1 1.8525 -14.5861 -4.4190 42 1 4.1456 -4.4523 0.0080 43 1 5.2589 -2.2702 0.1890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588631875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:10 Heat of formation + Delta-G solvation = -25.875367 kcal Electronic energy + Delta-G solvation = -21915.537808 eV Core-core repulsion = 18573.552558 eV Total energy + Delta-G solvation = -3341.985250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85744 -40.50481 -37.58353 -36.71779 -36.11784 -34.61954 -32.52284 -31.55322 -31.19364 -29.01372 -27.71099 -26.24758 -24.52467 -23.74109 -22.54996 -21.65930 -21.21375 -19.06954 -18.83821 -18.25076 -17.32676 -17.00013 -16.73392 -16.45983 -16.30286 -16.19197 -15.63826 -15.35256 -14.90368 -14.84138 -14.65946 -14.34620 -13.88288 -13.72230 -13.52055 -13.44355 -13.16622 -13.11145 -12.86738 -12.63497 -12.34759 -12.08423 -11.95771 -11.75402 -11.52764 -11.33443 -11.26223 -11.08567 -10.80727 -10.75451 -10.34998 -9.71625 -8.52970 -8.29279 -6.32094 0.19622 0.42938 1.35042 1.36657 1.49181 1.55390 1.84210 2.14417 2.36108 2.94197 3.06209 3.62162 3.64683 3.98220 4.06366 4.13273 4.15870 4.24311 4.35058 4.48634 4.55794 4.60428 4.64593 4.66032 4.76957 4.79691 4.82007 4.86078 4.91522 4.99403 5.14183 5.17123 5.20935 5.23489 5.31420 5.61599 5.66991 5.69162 5.71154 6.03578 6.29898 6.33249 6.38144 6.76133 7.06721 7.20490 7.32703 8.87175 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.002242 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.681335 B =12487.116612 C =12932.068188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.623 5.623 3 C 0.107 3.893 4 C 0.399 3.601 5 C -0.265 4.265 6 C 0.221 3.779 7 N -0.660 5.660 8 C 0.515 3.485 9 O -0.554 6.554 10 C -0.127 4.127 11 C -0.099 4.099 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.529 4.529 15 H 0.038 0.962 16 C 0.002 3.998 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.252 1.252 22 C -0.252 4.252 23 C 0.156 3.844 24 N -0.572 5.572 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.160 0.840 32 H 0.432 0.568 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.266 0.734 42 H 0.130 0.870 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 32.136 11.891 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.338 5.338 3 C -0.036 4.036 4 C 0.164 3.836 5 C -0.293 4.293 6 C 0.117 3.883 7 N -0.307 5.307 8 C 0.305 3.695 9 O -0.430 6.430 10 C -0.166 4.166 11 C -0.138 4.138 12 C -0.131 4.131 13 C -0.056 4.056 14 C -0.567 4.567 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.176 1.176 22 C -0.277 4.277 23 C -0.001 4.001 24 N -0.292 5.292 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.178 0.822 32 H 0.272 0.728 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.148 0.852 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.145 32.958 11.535 34.984 hybrid contribution 0.007 -1.497 -0.406 1.551 sum -2.138 31.462 11.128 33.440 Atomic orbital electron populations 1.21947 0.76520 1.04433 1.02354 1.46472 1.06295 1.02573 1.78417 1.21540 0.96964 0.84054 1.01058 1.18355 0.88251 0.86572 0.90441 1.21243 1.02055 0.89651 1.16311 1.17871 0.91793 0.85750 0.92862 1.43437 1.23589 1.09590 1.54069 1.21513 0.86534 0.85682 0.75747 1.90717 1.20559 1.82186 1.49576 1.21712 0.99901 0.90320 1.04689 1.21305 0.98276 0.94294 0.99879 1.21336 0.98226 0.93686 0.99898 1.19587 0.95965 0.94040 0.95976 1.21552 1.01851 0.98805 1.34520 0.94387 1.26001 1.02364 0.94790 0.96267 1.70064 1.39933 1.05483 1.43647 0.85699 0.79743 0.79221 0.78246 1.19231 1.20848 1.17602 1.21980 0.94523 1.00358 1.10866 1.22554 1.00449 0.85983 0.91096 1.67234 1.06790 1.32221 1.22992 0.92421 0.88875 0.90448 0.88429 0.93299 0.93889 0.82233 0.72819 0.85697 0.85901 0.92989 0.92660 0.92220 0.92345 0.96868 0.96864 0.92563 0.85197 0.80912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.02 127.77 1.28 1.92 16 2 N -0.62 -9.27 3.39 -754.13 -2.56 -11.83 16 3 C 0.11 1.31 10.18 127.77 1.30 2.61 16 4 C 0.40 8.18 7.37 132.97 0.98 9.16 16 5 C -0.27 -4.79 9.13 22.62 0.21 -4.58 16 6 C 0.22 4.72 6.33 38.44 0.24 4.96 16 7 N -0.66 -11.39 5.34 -303.07 -1.62 -13.01 16 8 C 0.52 12.06 7.69 87.66 0.67 12.73 16 9 O -0.55 -18.04 13.47 -3.03 -0.04 -18.08 16 10 C -0.13 -2.55 5.70 29.85 0.17 -2.38 16 11 C -0.10 -3.01 4.50 30.59 0.14 -2.88 16 12 C -0.09 -3.45 5.15 30.59 0.16 -3.29 16 13 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 14 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 15 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 16 C 0.00 0.14 5.47 84.65 0.46 0.60 16 17 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 18 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 22 C -0.25 -6.23 8.77 22.49 0.20 -6.04 16 23 C 0.16 3.54 11.16 84.55 0.94 4.49 16 24 N -0.57 -13.51 9.57 -193.50 -1.85 -15.36 16 25 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.09 0.28 7.92 -2.39 -0.02 0.26 16 27 H 0.08 0.44 6.39 -2.39 -0.02 0.43 16 28 H 0.10 0.58 7.79 -2.39 -0.02 0.56 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.16 1.87 6.26 -2.91 -0.02 1.85 16 32 H 0.43 3.88 8.83 -92.71 -0.82 3.06 16 33 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 40 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 41 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.13 3.62 6.32 -2.91 -0.02 3.61 16 43 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -78.97 354.97 3.37 -75.60 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.13 Total: 9.04 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 7.12 Total: -14.05 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -5.73 Total: -100.20 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.04 Total: -18.08 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -78.97 3.37 -75.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588631875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.725 kcal (2) G-P(sol) polarization free energy of solvation -78.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds