Wall clock time and date at job start Tue Mar 31 2020 07:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00300 * 2 1 4 4 C 1.53004 * 109.46891 * 90.00255 * 3 2 1 5 5 C 1.50706 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.00005 * 124.99984 * 5 4 3 7 7 N 1.32124 * 119.99712 * 180.02562 * 6 5 4 8 8 C 1.32158 * 120.00097 * 359.97438 * 7 6 5 9 9 C 1.38336 * 120.00075 * 0.26620 * 8 7 6 10 10 N 1.32127 * 120.00100 * 305.02162 * 5 4 3 11 11 C 1.34781 * 119.99914 * 180.02562 * 2 1 3 12 12 O 1.21281 * 120.00283 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99643 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.46840 * 179.97438 * 13 11 2 15 15 C 1.52996 * 109.47002 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47357 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47730 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99503 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00115 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99727 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47436 * 59.99513 * 21 19 17 23 23 H 1.48506 * 109.47302 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47229 * 299.99720 * 21 19 17 25 25 H 1.08999 * 109.47038 * 89.99635 * 1 2 3 26 26 H 1.08998 * 109.47043 * 210.00093 * 1 2 3 27 27 H 1.09001 * 109.46377 * 329.99781 * 1 2 3 28 28 H 1.09000 * 109.47210 * 330.00241 * 3 2 1 29 29 H 1.08999 * 109.47300 * 210.00226 * 3 2 1 30 30 H 1.09000 * 109.47206 * 59.99983 * 4 3 2 31 31 H 1.08999 * 109.47125 * 300.00078 * 4 3 2 32 32 H 1.08005 * 120.00186 * 0.03930 * 6 5 4 33 33 H 1.08002 * 119.99718 * 179.97438 * 8 7 6 34 34 H 1.07998 * 120.00403 * 179.72028 * 9 8 7 35 35 H 1.08997 * 109.46698 * 299.99134 * 13 11 2 36 36 H 1.08992 * 109.47650 * 60.00048 * 13 11 2 37 37 H 1.09005 * 109.47257 * 299.99877 * 14 13 11 38 38 H 1.09001 * 109.47460 * 59.99524 * 14 13 11 39 39 H 1.09000 * 109.47371 * 299.99447 * 15 14 13 40 40 H 1.09002 * 109.47131 * 60.00203 * 15 14 13 41 41 H 1.09005 * 109.47078 * 300.00304 * 16 15 14 42 42 H 1.09001 * 109.47284 * 59.99733 * 16 15 14 43 43 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7102 1.4426 5 6 3.2057 3.0157 1.4426 6 6 2.7012 4.1055 2.1302 7 7 3.3611 5.2501 2.1297 8 6 4.5033 5.3540 1.4731 9 6 5.0051 4.2660 0.7816 10 7 4.3474 3.1198 0.7857 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0017 14 6 2.3795 -3.6353 -0.0027 15 6 1.6144 -4.9602 -0.0033 16 6 2.6086 -6.1232 -0.0037 17 6 1.8551 -7.4283 -0.0048 18 1 0.7751 -7.4282 -0.0048 19 6 2.5445 -8.6224 -0.0048 20 7 3.8596 -8.6224 -0.0043 21 14 1.6104 -10.2401 -0.0056 22 1 0.7570 -10.3184 -1.2183 23 1 2.5753 -11.3689 -0.0061 24 1 0.7562 -10.3190 1.2066 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6085 2.0284 -0.5138 29 1 3.1500 1.1383 -0.5139 30 1 3.0417 0.9505 1.9564 31 1 1.5002 1.8406 1.9564 32 1 1.7680 4.0204 2.6673 33 1 5.0426 6.2898 1.4724 34 1 5.9362 4.3522 0.2413 35 1 0.7584 -2.5306 0.8881 36 1 0.7590 -2.5295 -0.8919 37 1 3.0062 -3.5768 -0.8927 38 1 3.0062 -3.5784 0.8872 39 1 0.9881 -5.0186 0.8869 40 1 0.9875 -5.0174 -0.8931 41 1 3.2354 -6.0652 -0.8936 42 1 3.2353 -6.0659 0.8863 43 1 4.3446 -9.4625 -0.0047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588667719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:25 Heat of formation + Delta-G solvation = -11.041249 kcal Electronic energy + Delta-G solvation = -21841.158875 eV Core-core repulsion = 18499.816881 eV Total energy + Delta-G solvation = -3341.341994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48595 -39.90293 -36.29915 -34.86465 -34.80104 -33.47384 -32.56656 -30.45031 -29.26501 -26.97233 -26.08220 -25.06818 -24.43061 -22.65289 -21.67858 -19.98291 -19.04043 -17.94390 -17.38649 -16.86345 -16.66574 -16.18588 -15.95606 -15.72633 -15.16078 -14.50103 -14.41762 -14.02989 -13.97227 -13.35703 -13.17095 -12.90460 -12.74171 -12.54459 -12.49735 -12.09380 -11.93893 -11.67133 -11.60905 -11.54147 -11.24711 -10.94828 -10.51788 -10.49177 -10.37099 -9.77763 -9.67577 -9.58057 -9.44930 -9.19116 -8.96455 -8.79974 -8.28186 -5.92967 -3.95536 0.35194 0.74124 2.71479 2.85296 3.29607 3.36582 3.40930 3.43130 3.65450 3.86398 4.06236 4.38140 4.49443 4.53274 4.67920 4.83955 4.87795 4.91091 4.99116 5.06514 5.17975 5.19943 5.34218 5.41132 5.42351 5.45554 5.63822 5.76570 5.89631 5.97042 6.16985 6.29761 6.37906 6.58168 6.87165 6.87629 7.04588 7.21579 7.29495 7.39017 7.76298 7.92904 8.08578 8.23987 8.50221 9.12015 9.67826 11.18295 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.002120 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.715377 B =13202.070958 C =13670.849861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.627 5.627 3 C 0.125 3.875 4 C -0.084 4.084 5 C 0.090 3.910 6 C 0.051 3.949 7 N -0.438 5.438 8 C 0.038 3.962 9 C 0.057 3.943 10 N -0.431 5.431 11 C 0.511 3.489 12 O -0.527 6.527 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 29.376 2.099 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.362 5.362 3 C 0.001 3.999 4 C -0.123 4.123 5 C -0.051 4.051 6 C -0.109 4.109 7 N -0.152 5.152 8 C -0.121 4.121 9 C -0.103 4.103 10 N -0.146 5.146 11 C 0.300 3.700 12 O -0.402 6.402 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.945 29.247 2.094 29.736 hybrid contribution -0.492 -0.774 0.047 0.919 sum -5.437 28.473 2.140 29.067 Atomic orbital electron populations 1.21820 0.79413 1.03329 1.02022 1.47989 1.06987 1.05911 1.75343 1.21274 0.98720 0.84788 0.95070 1.20923 0.99349 0.92454 0.99607 1.22210 0.92371 0.96903 0.93657 1.23645 1.00551 0.88874 0.97860 1.68451 1.06560 1.24966 1.15199 1.23781 0.93315 1.00486 0.94524 1.23858 1.00258 0.89034 0.97133 1.68350 1.05813 1.25020 1.15416 1.21169 0.88311 0.85455 0.75041 1.90723 1.14097 1.87229 1.48166 1.21825 1.00072 0.92007 1.03755 1.21465 0.97048 0.92734 1.02953 1.21645 0.99063 0.94028 1.00011 1.19094 0.94068 0.91256 0.97313 1.21246 0.92931 0.91218 1.50487 0.92816 1.25047 0.94853 0.99221 0.95500 1.69965 1.06038 1.26595 1.50849 0.86668 0.79563 0.83271 0.78520 1.20307 1.21336 1.20304 0.92510 0.90423 0.91272 0.90999 0.88655 0.88772 0.89685 0.81417 0.81339 0.81185 0.89174 0.89198 0.91814 0.91841 0.93518 0.93500 0.96597 0.96603 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.24 59.85 0.61 1.11 16 2 N -0.63 -6.48 2.87 -181.57 -0.52 -7.00 16 3 C 0.12 1.21 5.27 -4.04 -0.02 1.19 16 4 C -0.08 -0.72 5.95 -27.88 -0.17 -0.88 16 5 C 0.09 0.81 6.18 -82.41 -0.51 0.30 16 6 C 0.05 0.40 10.85 -17.37 -0.19 0.21 16 7 N -0.44 -3.84 10.50 -13.06 -0.14 -3.98 16 8 C 0.04 0.27 11.22 -17.38 -0.20 0.07 16 9 C 0.06 0.43 11.22 -17.38 -0.20 0.24 16 10 N -0.43 -4.48 10.06 -9.29 -0.09 -4.57 16 11 C 0.51 7.26 7.67 -10.98 -0.08 7.17 16 12 O -0.53 -9.77 15.56 5.56 0.09 -9.68 16 13 C -0.14 -1.84 4.25 -27.88 -0.12 -1.95 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.46 6.44 -51.93 -0.33 0.13 16 27 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 28 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.10 1.21 7.24 -51.93 -0.38 0.84 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.49 7.89 -51.93 -0.41 0.09 16 32 H 0.17 0.84 7.95 -52.48 -0.42 0.42 16 33 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.09 1.03 7.40 -51.93 -0.38 0.64 16 36 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -36.45 363.59 -8.09 -44.54 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.95 Total: -4.35 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.67 Total: -10.46 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.02 Total: -42.52 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.45 -8.09 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588667719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.501 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds