Wall clock time and date at job start Tue Mar 31 2020 07:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00300 * 2 1 4 4 C 1.53004 * 109.46891 * 90.00255 * 3 2 1 5 5 C 1.50706 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.00005 * 124.99984 * 5 4 3 7 7 N 1.32124 * 119.99712 * 180.02562 * 6 5 4 8 8 C 1.32158 * 120.00097 * 359.97438 * 7 6 5 9 9 C 1.38336 * 120.00075 * 0.26620 * 8 7 6 10 10 N 1.32127 * 120.00100 * 305.02162 * 5 4 3 11 11 C 1.34781 * 119.99914 * 180.02562 * 2 1 3 12 12 O 1.21281 * 120.00283 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99643 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.46840 * 179.97438 * 13 11 2 15 15 C 1.52996 * 109.47002 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47357 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47730 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99503 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00115 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99727 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47436 * 59.99513 * 21 19 17 23 23 H 1.48506 * 109.47302 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47229 * 299.99720 * 21 19 17 25 25 H 1.08999 * 109.47038 * 89.99635 * 1 2 3 26 26 H 1.08998 * 109.47043 * 210.00093 * 1 2 3 27 27 H 1.09001 * 109.46377 * 329.99781 * 1 2 3 28 28 H 1.09000 * 109.47210 * 330.00241 * 3 2 1 29 29 H 1.08999 * 109.47300 * 210.00226 * 3 2 1 30 30 H 1.09000 * 109.47206 * 59.99983 * 4 3 2 31 31 H 1.08999 * 109.47125 * 300.00078 * 4 3 2 32 32 H 1.08005 * 120.00186 * 0.03930 * 6 5 4 33 33 H 1.08002 * 119.99718 * 179.97438 * 8 7 6 34 34 H 1.07998 * 120.00403 * 179.72028 * 9 8 7 35 35 H 1.08997 * 109.46698 * 299.99134 * 13 11 2 36 36 H 1.08992 * 109.47650 * 60.00048 * 13 11 2 37 37 H 1.09005 * 109.47257 * 299.99877 * 14 13 11 38 38 H 1.09001 * 109.47460 * 59.99524 * 14 13 11 39 39 H 1.09000 * 109.47371 * 299.99447 * 15 14 13 40 40 H 1.09002 * 109.47131 * 60.00203 * 15 14 13 41 41 H 1.09005 * 109.47078 * 300.00304 * 16 15 14 42 42 H 1.09001 * 109.47284 * 59.99733 * 16 15 14 43 43 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7102 1.4426 5 6 3.2057 3.0157 1.4426 6 6 2.7012 4.1055 2.1302 7 7 3.3611 5.2501 2.1297 8 6 4.5033 5.3540 1.4731 9 6 5.0051 4.2660 0.7816 10 7 4.3474 3.1198 0.7857 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0017 14 6 2.3795 -3.6353 -0.0027 15 6 1.6144 -4.9602 -0.0033 16 6 2.6086 -6.1232 -0.0037 17 6 1.8551 -7.4283 -0.0048 18 1 0.7751 -7.4282 -0.0048 19 6 2.5445 -8.6224 -0.0048 20 7 3.8596 -8.6224 -0.0043 21 14 1.6104 -10.2401 -0.0056 22 1 0.7570 -10.3184 -1.2183 23 1 2.5753 -11.3689 -0.0061 24 1 0.7562 -10.3190 1.2066 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6085 2.0284 -0.5138 29 1 3.1500 1.1383 -0.5139 30 1 3.0417 0.9505 1.9564 31 1 1.5002 1.8406 1.9564 32 1 1.7680 4.0204 2.6673 33 1 5.0426 6.2898 1.4724 34 1 5.9362 4.3522 0.2413 35 1 0.7584 -2.5306 0.8881 36 1 0.7590 -2.5295 -0.8919 37 1 3.0062 -3.5768 -0.8927 38 1 3.0062 -3.5784 0.8872 39 1 0.9881 -5.0186 0.8869 40 1 0.9875 -5.0174 -0.8931 41 1 3.2354 -6.0652 -0.8936 42 1 3.2353 -6.0659 0.8863 43 1 4.3446 -9.4625 -0.0047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588667719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:25 Heat of formation + Delta-G solvation = -35.546713 kcal Electronic energy + Delta-G solvation = -21842.221512 eV Core-core repulsion = 18499.816881 eV Total energy + Delta-G solvation = -3342.404631 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08146 -40.93170 -37.25819 -36.53929 -35.48325 -34.64903 -34.05101 -31.73047 -30.41143 -27.72641 -27.51854 -25.93026 -25.34419 -23.94243 -22.78303 -21.70212 -20.00988 -18.60171 -18.41364 -17.94159 -17.78510 -17.41122 -16.98707 -16.58037 -16.45457 -15.92896 -15.65498 -14.89701 -14.69583 -14.48583 -14.24290 -14.19121 -13.61281 -13.58095 -13.44006 -13.36320 -13.18759 -12.98286 -12.76933 -12.57686 -12.38355 -12.30847 -12.13370 -12.10098 -11.97301 -11.36624 -11.32744 -11.13958 -10.72283 -10.53872 -10.28654 -10.05538 -9.61552 -8.17753 -6.30209 -0.21070 0.13591 1.40715 1.45069 1.52876 1.65203 2.01868 2.42663 2.71172 3.11696 3.14628 3.36131 3.49569 3.64628 3.85017 4.00269 4.06108 4.11403 4.15381 4.31029 4.37282 4.41646 4.56127 4.57004 4.64742 4.67266 4.78445 4.83643 4.86471 4.95019 5.02062 5.06657 5.20040 5.33898 5.38206 5.41992 5.56665 5.59855 5.78698 5.88616 6.25782 6.31195 6.38291 6.81657 6.88171 7.21845 7.39291 8.94310 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.002120 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.715377 B =13202.070958 C =13670.849861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.617 5.617 3 C 0.127 3.873 4 C -0.074 4.074 5 C 0.074 3.926 6 C 0.054 3.946 7 N -0.460 5.460 8 C 0.044 3.956 9 C 0.048 3.952 10 N -0.471 5.471 11 C 0.505 3.495 12 O -0.586 6.586 13 C -0.125 4.125 14 C -0.096 4.096 15 C -0.094 4.094 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.068 0.932 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.264 1.264 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.197 0.803 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.061 0.939 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 30.603 2.454 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.349 5.349 3 C 0.003 3.997 4 C -0.113 4.113 5 C -0.067 4.067 6 C -0.105 4.105 7 N -0.174 5.174 8 C -0.115 4.115 9 C -0.112 4.112 10 N -0.187 5.187 11 C 0.295 3.705 12 O -0.466 6.466 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.188 1.188 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.213 0.787 33 H 0.218 0.782 34 H 0.210 0.790 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.367 30.515 2.452 31.737 hybrid contribution 0.610 -1.059 -0.080 1.225 sum -7.757 29.457 2.371 30.553 Atomic orbital electron populations 1.22179 0.76361 1.05400 1.03493 1.48017 1.08782 1.04862 1.73269 1.21270 0.97487 0.84993 0.95923 1.20832 1.00392 0.91503 0.98600 1.22289 0.92459 0.97440 0.94501 1.24016 1.01234 0.88098 0.97173 1.68528 1.07456 1.25405 1.16033 1.24293 0.92768 1.01376 0.93058 1.24286 1.00923 0.88552 0.97430 1.68307 1.06969 1.26712 1.16672 1.21318 0.87644 0.86835 0.74717 1.90707 1.16579 1.88088 1.51262 1.21698 0.98850 0.89425 1.06455 1.21254 0.97540 0.93870 1.00790 1.21441 0.97772 0.92580 1.01395 1.19062 0.94720 0.93916 0.94209 1.21727 0.93781 0.92148 1.50285 0.91428 1.26128 0.95812 1.03846 0.94818 1.70133 1.08112 1.27799 1.51836 0.85413 0.78134 0.77577 0.79374 1.18878 1.21152 1.18824 0.91283 0.89357 0.88344 0.88294 0.92501 0.91960 0.86244 0.78654 0.78196 0.79032 0.86144 0.86556 0.94216 0.94070 0.91884 0.92006 0.99885 0.99819 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.24 127.77 1.31 1.92 16 2 N -0.62 -11.78 2.87 -846.74 -2.43 -14.21 16 3 C 0.13 2.39 5.27 86.38 0.46 2.84 16 4 C -0.07 -1.22 5.95 29.85 0.18 -1.04 16 5 C 0.07 1.30 6.18 42.55 0.26 1.56 16 6 C 0.05 0.76 10.85 84.68 0.92 1.68 16 7 N -0.46 -7.33 10.50 -195.22 -2.05 -9.38 16 8 C 0.04 0.55 11.22 84.67 0.95 1.50 16 9 C 0.05 0.71 11.22 84.67 0.95 1.66 16 10 N -0.47 -10.02 10.06 -183.29 -1.84 -11.87 16 11 C 0.50 14.31 7.67 87.66 0.67 14.98 16 12 O -0.59 -23.10 15.56 -3.03 -0.05 -23.15 16 13 C -0.12 -3.15 4.25 29.85 0.13 -3.03 16 14 C -0.10 -3.58 4.50 30.59 0.14 -3.44 16 15 C -0.09 -3.90 5.15 30.59 0.16 -3.74 16 16 C 0.02 1.01 4.97 29.85 0.15 1.16 16 17 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 18 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 19 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 20 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 21 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.66 6.44 -2.39 -0.02 0.65 16 27 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 28 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.06 1.54 7.24 -2.39 -0.02 1.52 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.12 1.06 7.89 -2.39 -0.02 1.04 16 32 H 0.20 1.40 7.95 -2.91 -0.02 1.38 16 33 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.12 2.34 7.40 -2.39 -0.02 2.32 16 36 H 0.12 2.36 8.11 -2.39 -0.02 2.34 16 37 H 0.04 1.63 8.10 -2.38 -0.02 1.61 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -84.55 363.59 3.88 -80.67 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.98 Total: 5.74 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 6.96 Total: -15.43 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -6.04 Total: -94.89 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -84.55 3.88 -80.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588667719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.127 kcal (2) G-P(sol) polarization free energy of solvation -84.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds