Wall clock time and date at job start Tue Mar 31 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00500 * 2 1 4 4 C 1.38998 * 119.99693 * 179.72342 * 2 1 3 5 5 C 1.39046 * 119.66293 * 4.72855 * 4 2 1 6 6 C 1.38466 * 119.23912 * 179.75087 * 5 4 2 7 7 C 1.38609 * 118.57864 * 0.51820 * 6 5 4 8 8 C 1.38856 * 119.26726 * 359.72285 * 7 6 5 9 9 N 1.39404 * 119.64737 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99861 * 174.91077 * 9 8 7 11 11 O 1.21275 * 119.99612 * 5.09271 * 10 9 8 12 12 C 1.50690 * 120.00141 * 185.08840 * 10 9 8 13 13 C 1.53001 * 109.47468 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47341 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46995 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99862 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00211 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99769 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47075 * 89.99993 * 20 18 16 22 22 H 1.48499 * 109.46754 * 209.99621 * 20 18 16 23 23 H 1.48501 * 109.47030 * 329.99690 * 20 18 16 24 24 N 1.32432 * 119.66294 * 185.00103 * 4 2 1 25 25 H 1.09000 * 109.47222 * 89.99658 * 1 2 3 26 26 H 1.09001 * 109.47794 * 209.99810 * 1 2 3 27 27 H 1.08999 * 109.47210 * 330.00316 * 1 2 3 28 28 H 1.09004 * 109.46963 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47173 * 119.99762 * 3 2 1 30 30 H 1.08996 * 109.47224 * 239.99570 * 3 2 1 31 31 H 1.07997 * 120.38040 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.70956 * 180.21834 * 6 5 4 33 33 H 1.08000 * 120.37026 * 179.75250 * 7 6 5 34 34 H 0.97000 * 119.99921 * 354.91832 * 9 8 7 35 35 H 1.09003 * 109.47607 * 300.00452 * 12 10 9 36 36 H 1.09007 * 109.47224 * 60.00499 * 12 10 9 37 37 H 1.09003 * 109.46911 * 300.00677 * 13 12 10 38 38 H 1.08998 * 109.46841 * 59.99740 * 13 12 10 39 39 H 1.08998 * 109.47157 * 300.00238 * 14 13 12 40 40 H 1.09005 * 109.46817 * 60.00338 * 14 13 12 41 41 H 1.08998 * 109.47410 * 300.00141 * 15 14 13 42 42 H 1.08996 * 109.47201 * 60.00309 * 15 14 13 43 43 H 0.97004 * 120.00012 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2038 0.0058 5 6 1.4610 -2.4022 -0.0880 6 6 2.1625 -3.5961 -0.0866 7 6 3.5438 -3.5534 0.0198 8 6 4.1796 -2.3226 0.1154 9 7 5.5686 -2.2704 0.2222 10 6 6.2010 -1.0802 0.2120 11 8 5.5579 -0.0520 0.2032 12 6 7.7069 -1.0271 0.2118 13 6 8.1659 0.4324 0.1999 14 6 9.6949 0.4863 0.1990 15 6 10.1537 1.9458 0.1865 16 6 11.6598 1.9989 0.1850 17 1 12.2324 1.0832 0.1926 18 6 12.3067 3.2164 0.1749 19 7 13.6211 3.2627 0.1741 20 14 11.3163 4.8002 0.1639 21 1 11.0554 5.2306 1.5609 22 1 12.0812 5.8573 -0.5451 23 1 10.0250 4.5717 -0.5331 24 7 3.4804 -1.1978 0.1061 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3635 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.4892 2.0972 -0.0005 29 1 2.8242 1.3264 0.8900 30 1 2.8242 1.3263 -0.8899 31 1 0.3838 -2.4018 -0.1647 32 1 1.6440 -4.5405 -0.1619 33 1 4.1194 -4.4672 0.0278 34 1 6.0799 -3.0906 0.3037 35 1 8.0881 -1.5202 1.1060 36 1 8.0883 -1.5354 -0.6739 37 1 7.7847 0.9259 -0.6941 38 1 7.7845 0.9404 1.0857 39 1 10.0763 -0.0073 1.0928 40 1 10.0758 -0.0215 -0.6871 41 1 9.7723 2.4390 -0.7075 42 1 9.7728 2.4540 1.0723 43 1 14.0762 4.1193 0.1674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588675338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:15 Heat of formation + Delta-G solvation = 9.100456 kcal Electronic energy + Delta-G solvation = -22325.619617 eV Core-core repulsion = 18985.151033 eV Total energy + Delta-G solvation = -3340.468584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87377 -39.33634 -36.87463 -35.07757 -34.50679 -32.63221 -32.33478 -30.47724 -29.54247 -28.26872 -26.10439 -25.47643 -23.48604 -21.96614 -21.69488 -20.12684 -20.00961 -18.14310 -17.12110 -16.57043 -16.51166 -15.92511 -15.84889 -15.64811 -15.41074 -14.42563 -14.22775 -14.21643 -13.91891 -13.47008 -13.35164 -12.76689 -12.66234 -12.62706 -12.38477 -12.32833 -12.08031 -11.85360 -11.73617 -11.12735 -10.95375 -10.73104 -10.52459 -10.22144 -10.17722 -9.84051 -9.63765 -9.51991 -9.11237 -9.00898 -8.90503 -8.47994 -7.62558 -5.99226 -3.96586 1.12833 1.34596 2.58559 2.74646 2.96984 3.36444 3.43346 3.49558 3.88275 4.33810 4.51378 4.67630 4.77036 4.87714 4.98444 5.05464 5.09465 5.13467 5.24895 5.27946 5.29648 5.33146 5.35873 5.63969 5.69027 5.79139 5.91450 6.03661 6.04814 6.13091 6.15582 6.41231 6.56726 6.62516 6.69572 6.83592 7.00594 7.16444 7.22850 7.39845 7.52626 7.86222 8.05087 8.32112 8.59741 9.05850 9.64237 11.14276 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002737 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.694746 B =10228.258131 C =11350.160320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.429 3.571 5 C -0.277 4.277 6 C -0.009 4.009 7 C -0.273 4.273 8 C 0.412 3.588 9 N -0.667 5.667 10 C 0.500 3.500 11 O -0.467 6.467 12 C -0.137 4.137 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 N -0.530 5.530 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.417 0.583 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.100 -14.958 -0.290 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.330 5.330 3 C -0.035 4.035 4 C 0.193 3.807 5 C -0.303 4.303 6 C -0.035 4.035 7 C -0.299 4.299 8 C 0.178 3.822 9 N -0.314 5.314 10 C 0.287 3.713 11 O -0.334 6.334 12 C -0.177 4.177 13 C -0.144 4.144 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 N -0.253 5.253 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.254 0.746 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.976 -13.022 -0.248 30.859 hybrid contribution -0.499 -0.370 -0.008 0.622 sum -28.475 -13.392 -0.257 31.469 Atomic orbital electron populations 1.21703 0.78551 1.02892 1.01412 1.46266 1.04927 1.03411 1.78433 1.21505 0.95976 0.82960 1.03009 1.18072 0.87477 0.85840 0.89345 1.21274 1.00732 0.91805 1.16511 1.20998 0.93000 0.97696 0.91811 1.21124 0.95622 0.96671 1.16507 1.18080 0.84396 0.88794 0.90902 1.43919 1.03973 1.11028 1.72504 1.21358 0.91156 0.82843 0.75941 1.90783 1.67562 1.32493 1.42604 1.21811 0.89618 1.01902 1.04392 1.21489 0.97534 0.92410 1.02959 1.21472 0.91692 0.99862 1.00960 1.19574 0.97031 0.92365 0.96313 1.21186 0.89828 0.94226 1.50446 0.91102 1.25044 0.94763 0.99194 0.94634 1.69923 1.07470 1.25642 1.51525 0.86773 0.80735 0.83271 0.78519 1.20325 1.21479 1.18892 1.66985 1.05952 1.29111 1.23249 0.93053 0.91197 0.91086 0.91731 0.91948 0.92305 0.85313 0.84876 0.85159 0.74617 0.88806 0.88753 0.91743 0.91734 0.92831 0.92809 0.96623 0.97063 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 10.03 59.84 0.60 1.25 16 2 N -0.62 -6.77 3.39 -189.69 -0.64 -7.41 16 3 C 0.11 1.24 10.18 59.85 0.61 1.85 16 4 C 0.43 5.43 7.37 -155.03 -1.14 4.28 16 5 C -0.28 -2.70 9.19 -39.20 -0.36 -3.06 16 6 C -0.01 -0.08 10.16 -39.36 -0.40 -0.48 16 7 C -0.27 -2.58 9.93 -39.22 -0.39 -2.97 16 8 C 0.41 5.17 7.42 -154.69 -1.15 4.03 16 9 N -0.67 -7.33 5.39 -11.45 -0.06 -7.40 16 10 C 0.50 7.01 7.79 -10.99 -0.09 6.93 16 11 O -0.47 -8.46 14.24 5.56 0.08 -8.38 16 12 C -0.14 -1.72 5.70 -27.89 -0.16 -1.88 16 13 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 14 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 15 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 16 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 20 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 24 N -0.53 -7.90 7.09 -11.55 -0.08 -7.98 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.38 6.35 -51.93 -0.33 0.05 16 27 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 28 H 0.06 0.54 7.80 -51.93 -0.40 0.13 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.13 0.93 6.24 -52.49 -0.33 0.61 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.42 2.84 8.70 -40.82 -0.36 2.49 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -36.84 356.27 -9.34 -46.17 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.83 Total: -2.18 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.28 Total: -8.26 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.01 Total: -50.54 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.84 -9.34 -46.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds