Wall clock time and date at job start Tue Mar 31 2020 07:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00500 * 2 1 4 4 C 1.38998 * 119.99693 * 179.72342 * 2 1 3 5 5 C 1.39046 * 119.66293 * 4.72855 * 4 2 1 6 6 C 1.38466 * 119.23912 * 179.75087 * 5 4 2 7 7 C 1.38609 * 118.57864 * 0.51820 * 6 5 4 8 8 C 1.38856 * 119.26726 * 359.72285 * 7 6 5 9 9 N 1.39404 * 119.64737 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99861 * 174.91077 * 9 8 7 11 11 O 1.21275 * 119.99612 * 5.09271 * 10 9 8 12 12 C 1.50690 * 120.00141 * 185.08840 * 10 9 8 13 13 C 1.53001 * 109.47468 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47341 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46995 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99862 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00211 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99769 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47075 * 89.99993 * 20 18 16 22 22 H 1.48499 * 109.46754 * 209.99621 * 20 18 16 23 23 H 1.48501 * 109.47030 * 329.99690 * 20 18 16 24 24 N 1.32432 * 119.66294 * 185.00103 * 4 2 1 25 25 H 1.09000 * 109.47222 * 89.99658 * 1 2 3 26 26 H 1.09001 * 109.47794 * 209.99810 * 1 2 3 27 27 H 1.08999 * 109.47210 * 330.00316 * 1 2 3 28 28 H 1.09004 * 109.46963 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47173 * 119.99762 * 3 2 1 30 30 H 1.08996 * 109.47224 * 239.99570 * 3 2 1 31 31 H 1.07997 * 120.38040 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.70956 * 180.21834 * 6 5 4 33 33 H 1.08000 * 120.37026 * 179.75250 * 7 6 5 34 34 H 0.97000 * 119.99921 * 354.91832 * 9 8 7 35 35 H 1.09003 * 109.47607 * 300.00452 * 12 10 9 36 36 H 1.09007 * 109.47224 * 60.00499 * 12 10 9 37 37 H 1.09003 * 109.46911 * 300.00677 * 13 12 10 38 38 H 1.08998 * 109.46841 * 59.99740 * 13 12 10 39 39 H 1.08998 * 109.47157 * 300.00238 * 14 13 12 40 40 H 1.09005 * 109.46817 * 60.00338 * 14 13 12 41 41 H 1.08998 * 109.47410 * 300.00141 * 15 14 13 42 42 H 1.08996 * 109.47201 * 60.00309 * 15 14 13 43 43 H 0.97004 * 120.00012 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2038 0.0058 5 6 1.4610 -2.4022 -0.0880 6 6 2.1625 -3.5961 -0.0866 7 6 3.5438 -3.5534 0.0198 8 6 4.1796 -2.3226 0.1154 9 7 5.5686 -2.2704 0.2222 10 6 6.2010 -1.0802 0.2120 11 8 5.5579 -0.0520 0.2032 12 6 7.7069 -1.0271 0.2118 13 6 8.1659 0.4324 0.1999 14 6 9.6949 0.4863 0.1990 15 6 10.1537 1.9458 0.1865 16 6 11.6598 1.9989 0.1850 17 1 12.2324 1.0832 0.1926 18 6 12.3067 3.2164 0.1749 19 7 13.6211 3.2627 0.1741 20 14 11.3163 4.8002 0.1639 21 1 11.0554 5.2306 1.5609 22 1 12.0812 5.8573 -0.5451 23 1 10.0250 4.5717 -0.5331 24 7 3.4804 -1.1978 0.1061 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3635 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.4892 2.0972 -0.0005 29 1 2.8242 1.3264 0.8900 30 1 2.8242 1.3263 -0.8899 31 1 0.3838 -2.4018 -0.1647 32 1 1.6440 -4.5405 -0.1619 33 1 4.1194 -4.4672 0.0278 34 1 6.0799 -3.0906 0.3037 35 1 8.0881 -1.5202 1.1060 36 1 8.0883 -1.5354 -0.6739 37 1 7.7847 0.9259 -0.6941 38 1 7.7845 0.9404 1.0857 39 1 10.0763 -0.0073 1.0928 40 1 10.0758 -0.0215 -0.6871 41 1 9.7723 2.4390 -0.7075 42 1 9.7728 2.4540 1.0723 43 1 14.0762 4.1193 0.1674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588675338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:14 Heat of formation + Delta-G solvation = -14.379484 kcal Electronic energy + Delta-G solvation = -22326.637784 eV Core-core repulsion = 18985.151033 eV Total energy + Delta-G solvation = -3341.486751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73245 -40.29305 -37.69513 -36.65721 -35.45601 -34.60498 -33.19405 -31.98616 -30.57632 -29.00564 -27.67149 -26.27625 -24.68270 -23.22891 -22.59445 -21.73627 -21.12328 -18.97834 -18.82882 -18.05355 -17.31184 -16.99918 -16.64058 -16.43027 -16.30597 -16.27733 -15.65687 -15.14908 -14.96828 -14.68718 -14.51609 -14.05237 -13.79480 -13.66796 -13.52560 -13.49583 -13.23767 -13.07311 -12.86480 -12.49823 -12.35113 -12.08498 -11.88186 -11.76379 -11.52009 -11.35037 -11.27481 -11.12000 -10.90907 -10.76525 -9.94176 -9.77129 -8.38321 -8.30227 -6.33065 0.31430 0.62540 1.33834 1.35242 1.48250 1.74921 1.84734 2.16572 2.35229 3.05141 3.08308 3.50771 3.90033 4.01784 4.07931 4.14905 4.21413 4.36032 4.39419 4.47086 4.51897 4.56613 4.64267 4.65022 4.76270 4.76557 4.84901 4.87189 4.96081 5.04983 5.13590 5.19881 5.26699 5.35198 5.43983 5.59900 5.65406 5.68164 5.79991 5.88897 6.29170 6.40317 6.42121 6.74835 7.14003 7.31728 7.49663 8.86339 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002737 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.694746 B =10228.258131 C =11350.160320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.627 5.627 3 C 0.119 3.881 4 C 0.396 3.604 5 C -0.273 4.273 6 C -0.008 4.008 7 C -0.263 4.263 8 C 0.376 3.624 9 N -0.653 5.653 10 C 0.500 3.500 11 O -0.519 6.519 12 C -0.126 4.126 13 C -0.096 4.096 14 C -0.093 4.093 15 C -0.017 4.017 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.254 1.254 24 N -0.575 5.575 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.436 0.564 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.012 0.988 42 H 0.012 0.988 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.763 -16.777 -0.320 35.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.341 5.341 3 C -0.025 4.025 4 C 0.160 3.840 5 C -0.298 4.298 6 C -0.034 4.034 7 C -0.288 4.288 8 C 0.144 3.856 9 N -0.302 5.302 10 C 0.287 3.713 11 O -0.391 6.391 12 C -0.166 4.166 13 C -0.135 4.135 14 C -0.130 4.130 15 C -0.055 4.055 16 C -0.567 4.567 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.177 1.177 24 N -0.299 5.299 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.172 0.828 32 H 0.191 0.809 33 H 0.180 0.820 34 H 0.277 0.723 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.660 -14.912 -0.277 34.095 hybrid contribution 0.328 0.077 -0.002 0.337 sum -30.332 -14.835 -0.279 33.767 Atomic orbital electron populations 1.21923 0.76115 1.04303 1.02443 1.46523 1.06390 1.02654 1.78541 1.21293 0.96245 0.84853 1.00116 1.18563 0.87356 0.87375 0.90681 1.21626 1.02047 0.91173 1.14972 1.21528 0.92785 0.98843 0.90247 1.21510 0.96397 0.96490 1.14402 1.18508 0.84756 0.89599 0.92731 1.43684 1.03946 1.10927 1.71596 1.21554 0.91568 0.83034 0.75095 1.90777 1.68586 1.34391 1.45300 1.21700 0.88802 0.99141 1.06943 1.21269 0.95100 0.95450 1.01632 1.21329 0.93670 0.96556 1.01479 1.19575 0.93985 0.95893 0.96003 1.21543 0.92157 0.93161 1.49887 0.94351 1.25984 0.95824 1.03145 0.94330 1.70059 1.09311 1.26834 1.52912 0.85704 0.79438 0.78646 0.79156 1.19223 1.20678 1.17746 1.66868 1.07532 1.31095 1.24437 0.92068 0.89854 0.89664 0.88667 0.94988 0.95127 0.82796 0.80921 0.81953 0.72327 0.86090 0.86220 0.93247 0.93069 0.92247 0.92339 0.96929 0.96992 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 10.03 127.77 1.28 2.37 16 2 N -0.63 -13.70 3.39 -754.06 -2.56 -16.26 16 3 C 0.12 2.87 10.18 127.77 1.30 4.17 16 4 C 0.40 9.90 7.37 133.03 0.98 10.89 16 5 C -0.27 -4.69 9.19 22.52 0.21 -4.48 16 6 C -0.01 -0.11 10.16 22.41 0.23 0.11 16 7 C -0.26 -4.20 9.93 22.51 0.22 -3.98 16 8 C 0.38 9.12 7.42 132.84 0.99 10.10 16 9 N -0.65 -13.55 5.39 -308.53 -1.66 -15.21 16 10 C 0.50 13.84 7.79 87.65 0.68 14.52 16 11 O -0.52 -19.56 14.24 -3.01 -0.04 -19.61 16 12 C -0.13 -2.95 5.70 29.85 0.17 -2.78 16 13 C -0.10 -3.20 4.50 30.59 0.14 -3.06 16 14 C -0.09 -3.60 5.15 30.59 0.16 -3.44 16 15 C -0.02 -0.85 4.04 29.85 0.12 -0.72 16 16 C -0.53 -31.49 9.66 25.60 0.25 -31.25 16 17 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 18 C 0.00 0.23 5.47 84.65 0.46 0.69 16 19 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 20 Si 0.95 46.56 27.47 68.60 1.88 48.45 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 24 N -0.58 -17.48 7.09 -190.47 -1.35 -18.83 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 0.72 6.35 -2.39 -0.02 0.70 16 27 H 0.08 0.72 7.92 -2.39 -0.02 0.70 16 28 H 0.09 1.59 7.80 -2.39 -0.02 1.57 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.15 1.73 6.24 -2.91 -0.02 1.71 16 32 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.44 4.89 8.70 -92.71 -0.81 4.08 16 35 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.12 2.22 8.14 -2.38 -0.02 2.21 16 37 H 0.05 1.77 8.10 -2.39 -0.02 1.76 16 38 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 42 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -84.30 356.27 3.89 -80.41 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.14 Total: 8.58 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 7.19 Total: -6.86 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -5.27 Total: -110.96 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.61 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -84.30 3.89 -80.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.029 kcal (2) G-P(sol) polarization free energy of solvation -84.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds