Wall clock time and date at job start Tue Mar 31 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99744 * 2 1 4 4 C 1.39186 * 120.00340 * 179.97438 * 2 1 3 5 5 C 1.39647 * 120.83454 * 174.23726 * 4 2 1 6 6 C 1.37773 * 119.22130 * 180.02562 * 5 4 2 7 7 N 1.32056 * 120.92435 * 0.02860 * 6 5 4 8 8 C 1.32468 * 121.82147 * 359.64908 * 7 6 5 9 9 N 1.39436 * 119.66078 * 180.31805 * 8 7 6 10 10 C 1.34771 * 119.99536 * 5.54207 * 9 8 7 11 11 O 1.21276 * 120.00411 * 5.21964 * 10 9 8 12 12 C 1.50702 * 119.99663 * 185.21887 * 10 9 8 13 13 C 1.52998 * 109.47293 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47411 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47046 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46928 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00325 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00217 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00143 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99616 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47499 * 89.99889 * 20 18 16 22 22 H 1.48500 * 109.47108 * 209.99977 * 20 18 16 23 23 H 1.48503 * 109.47359 * 329.99621 * 20 18 16 24 24 C 1.38731 * 120.68181 * 0.63926 * 8 7 6 25 25 H 1.09002 * 109.47058 * 174.66824 * 1 2 3 26 26 H 1.08994 * 109.47306 * 294.67051 * 1 2 3 27 27 H 1.08997 * 109.47111 * 54.67345 * 1 2 3 28 28 H 1.09000 * 109.47283 * 269.99419 * 3 2 1 29 29 H 1.09008 * 109.47260 * 29.99680 * 3 2 1 30 30 H 1.09002 * 109.47433 * 150.00017 * 3 2 1 31 31 H 1.08003 * 120.38507 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.54067 * 179.97438 * 6 5 4 33 33 H 0.96995 * 119.99737 * 185.54131 * 9 8 7 34 34 H 1.08994 * 109.47577 * 299.99953 * 12 10 9 35 35 H 1.08997 * 109.47080 * 60.00413 * 12 10 9 36 36 H 1.08997 * 109.47576 * 300.00522 * 13 12 10 37 37 H 1.09003 * 109.46942 * 59.99958 * 13 12 10 38 38 H 1.08994 * 109.47662 * 300.00464 * 14 13 12 39 39 H 1.08999 * 109.46560 * 60.00417 * 14 13 12 40 40 H 1.08997 * 109.47794 * 300.00609 * 15 14 13 41 41 H 1.08999 * 109.47065 * 60.00770 * 15 14 13 42 42 H 0.97000 * 119.99874 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.49558 * 179.68262 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2053 0.0005 5 6 3.5521 -1.2287 -0.1198 6 6 4.2073 -2.4406 -0.1159 7 7 3.5383 -3.5734 -0.0009 8 6 2.2195 -3.5964 0.1219 9 7 1.5594 -4.8181 0.2471 10 6 2.2684 -5.9591 0.3552 11 8 3.4775 -5.9161 0.4389 12 6 1.5588 -7.2885 0.3720 13 6 2.5871 -8.4140 0.5014 14 6 1.8666 -9.7636 0.5192 15 6 2.8950 -10.8891 0.6479 16 6 2.1853 -12.2185 0.6647 17 1 1.1085 -12.2568 0.5906 18 6 2.9107 -13.3859 0.7748 19 7 2.2914 -14.5460 0.7890 20 14 4.7730 -13.3195 0.9037 21 1 5.1676 -13.2320 2.3327 22 1 5.3547 -14.5472 0.3040 23 1 5.2774 -12.1268 0.1770 24 6 1.4878 -2.4177 0.1205 25 1 -0.3633 -1.0232 -0.0955 26 1 -0.3633 0.4289 0.9338 27 1 -0.3633 0.5942 -0.8384 28 1 2.3792 1.5834 -1.0276 29 1 1.6083 2.0285 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.1077 -0.3075 -0.2157 32 1 5.2830 -2.4647 -0.2092 33 1 0.5899 -4.8468 0.2563 34 1 0.8729 -7.3236 1.2184 35 1 0.9989 -7.4132 -0.5548 36 1 3.2727 -8.3789 -0.3452 37 1 3.1474 -8.2894 1.4280 38 1 1.1812 -9.7986 1.3659 39 1 1.3060 -9.8884 -0.4073 40 1 3.5801 -10.8540 -0.1992 41 1 3.4559 -10.7645 1.5741 42 1 2.8017 -15.3672 0.8668 43 1 0.4123 -2.4402 0.2156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588676333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:29 Heat of formation + Delta-G solvation = 8.184895 kcal Electronic energy + Delta-G solvation = -21897.429840 eV Core-core repulsion = 18556.921554 eV Total energy + Delta-G solvation = -3340.508286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90710 -39.38717 -37.24929 -35.14668 -34.71191 -32.55512 -31.41819 -30.88617 -29.89359 -28.48817 -26.16310 -25.65233 -23.23711 -22.78806 -21.30971 -20.00410 -19.97205 -18.35189 -17.22289 -16.71113 -16.55118 -16.03040 -15.86218 -15.58630 -15.24964 -14.54318 -14.41581 -14.27309 -14.15367 -13.83752 -13.54320 -13.10375 -12.88669 -12.61937 -12.56298 -12.37932 -12.07241 -11.72739 -11.70317 -11.15846 -11.03755 -10.70741 -10.54459 -10.49550 -10.13848 -9.81552 -9.61426 -9.49356 -9.09429 -9.01363 -8.46226 -8.45792 -8.02753 -5.97599 -3.94870 1.01691 1.39081 2.50761 2.75433 2.89153 3.38490 3.45348 3.52070 3.86685 4.31012 4.42610 4.53319 4.55085 4.77387 4.82372 4.87501 4.91352 5.03175 5.09162 5.18672 5.20476 5.26668 5.31494 5.33908 5.37597 5.59400 5.72597 5.79265 6.03886 6.06286 6.17579 6.42890 6.55904 6.71061 6.72001 6.85771 6.95181 7.02585 7.13699 7.42145 7.54894 7.88020 8.04153 8.33531 8.61376 9.07421 9.65954 11.15859 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.044273 B = 0.002222 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.283660 B =12595.887792 C =13177.925107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.629 5.629 3 C 0.093 3.907 4 C 0.272 3.728 5 C -0.283 4.283 6 C 0.171 3.829 7 N -0.515 5.515 8 C 0.404 3.596 9 N -0.668 5.668 10 C 0.501 3.499 11 O -0.465 6.465 12 C -0.137 4.137 13 C -0.107 4.107 14 C -0.102 4.102 15 C -0.016 4.016 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C -0.294 4.294 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.415 0.585 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 35.123 -2.048 35.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.340 5.340 3 C -0.050 4.050 4 C 0.162 3.838 5 C -0.309 4.309 6 C 0.014 3.986 7 N -0.233 5.233 8 C 0.173 3.827 9 N -0.315 5.315 10 C 0.288 3.712 11 O -0.333 6.333 12 C -0.177 4.177 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.323 4.323 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.251 0.749 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.371 34.209 -1.981 34.431 hybrid contribution -0.166 0.823 0.089 0.844 sum -3.537 35.032 -1.891 35.260 Atomic orbital electron populations 1.21741 0.79162 1.03350 1.01295 1.46232 1.05311 1.03125 1.79381 1.21659 0.97332 0.84562 1.01472 1.17687 0.91129 0.85424 0.89601 1.21542 0.92745 1.00256 1.16372 1.22394 0.99871 0.86139 0.90237 1.67733 1.06351 1.29902 1.19271 1.18199 0.88962 0.84819 0.90751 1.43882 1.10552 1.04547 1.72503 1.21353 0.88524 0.85372 0.75980 1.90804 1.13663 1.86449 1.42365 1.21809 1.00422 0.91095 1.04353 1.21500 0.96914 0.93092 1.02986 1.21472 0.98852 0.92724 1.00933 1.19581 0.95182 0.94266 0.96311 1.21187 0.95344 0.89123 1.50022 0.91117 1.25045 0.98507 0.95438 0.94670 1.69921 1.35805 0.97519 1.51323 0.86773 0.86235 0.77626 0.78666 1.20324 1.21485 1.18855 1.20823 1.00532 0.90545 1.20387 0.90254 0.92663 0.92282 0.93079 0.91319 0.91013 0.85168 0.82648 0.74880 0.88821 0.88743 0.91629 0.91693 0.92844 0.92814 0.96574 0.97026 0.92848 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.60 59.85 0.63 1.03 16 2 N -0.63 -4.25 3.40 -187.38 -0.64 -4.89 16 3 C 0.09 0.41 10.13 59.85 0.61 1.01 16 4 C 0.27 2.52 6.56 -83.64 -0.55 1.97 16 5 C -0.28 -2.63 9.22 -39.23 -0.36 -2.99 16 6 C 0.17 1.96 11.16 -17.63 -0.20 1.77 16 7 N -0.51 -7.63 7.92 -12.46 -0.10 -7.73 16 8 C 0.40 5.08 7.40 -154.69 -1.15 3.94 16 9 N -0.67 -7.45 5.39 -11.47 -0.06 -7.51 16 10 C 0.50 7.19 7.78 -10.99 -0.09 7.10 16 11 O -0.47 -8.77 14.28 5.56 0.08 -8.69 16 12 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 13 C -0.11 -1.82 4.50 -26.73 -0.12 -1.95 16 14 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 15 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 16 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 20 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 24 C -0.29 -2.85 9.15 -39.04 -0.36 -3.21 16 25 H 0.08 0.34 5.47 -51.93 -0.28 0.05 16 26 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.20 8.07 -51.92 -0.42 -0.22 16 30 H 0.07 0.30 6.51 -51.93 -0.34 -0.03 16 31 H 0.13 0.89 6.44 -52.48 -0.34 0.55 16 32 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.41 2.87 8.70 -40.82 -0.36 2.51 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 41 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.13 0.92 5.95 -52.49 -0.31 0.61 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -37.64 353.17 -8.33 -45.96 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.62 Total: -2.96 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.41 Total: -9.64 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.02 Total: -47.97 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.64 -8.33 -45.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588676333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.147 kcal (2) G-P(sol) polarization free energy of solvation -37.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds