Wall clock time and date at job start Tue Mar 31 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99744 * 2 1 4 4 C 1.39186 * 120.00340 * 179.97438 * 2 1 3 5 5 C 1.39647 * 120.83454 * 174.23726 * 4 2 1 6 6 C 1.37773 * 119.22130 * 180.02562 * 5 4 2 7 7 N 1.32056 * 120.92435 * 0.02860 * 6 5 4 8 8 C 1.32468 * 121.82147 * 359.64908 * 7 6 5 9 9 N 1.39436 * 119.66078 * 180.31805 * 8 7 6 10 10 C 1.34771 * 119.99536 * 5.54207 * 9 8 7 11 11 O 1.21276 * 120.00411 * 5.21964 * 10 9 8 12 12 C 1.50702 * 119.99663 * 185.21887 * 10 9 8 13 13 C 1.52998 * 109.47293 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47411 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47046 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46928 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00325 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00217 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00143 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99616 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47499 * 89.99889 * 20 18 16 22 22 H 1.48500 * 109.47108 * 209.99977 * 20 18 16 23 23 H 1.48503 * 109.47359 * 329.99621 * 20 18 16 24 24 C 1.38731 * 120.68181 * 0.63926 * 8 7 6 25 25 H 1.09002 * 109.47058 * 174.66824 * 1 2 3 26 26 H 1.08994 * 109.47306 * 294.67051 * 1 2 3 27 27 H 1.08997 * 109.47111 * 54.67345 * 1 2 3 28 28 H 1.09000 * 109.47283 * 269.99419 * 3 2 1 29 29 H 1.09008 * 109.47260 * 29.99680 * 3 2 1 30 30 H 1.09002 * 109.47433 * 150.00017 * 3 2 1 31 31 H 1.08003 * 120.38507 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.54067 * 179.97438 * 6 5 4 33 33 H 0.96995 * 119.99737 * 185.54131 * 9 8 7 34 34 H 1.08994 * 109.47577 * 299.99953 * 12 10 9 35 35 H 1.08997 * 109.47080 * 60.00413 * 12 10 9 36 36 H 1.08997 * 109.47576 * 300.00522 * 13 12 10 37 37 H 1.09003 * 109.46942 * 59.99958 * 13 12 10 38 38 H 1.08994 * 109.47662 * 300.00464 * 14 13 12 39 39 H 1.08999 * 109.46560 * 60.00417 * 14 13 12 40 40 H 1.08997 * 109.47794 * 300.00609 * 15 14 13 41 41 H 1.08999 * 109.47065 * 60.00770 * 15 14 13 42 42 H 0.97000 * 119.99874 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.49558 * 179.68262 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2053 0.0005 5 6 3.5521 -1.2287 -0.1198 6 6 4.2073 -2.4406 -0.1159 7 7 3.5383 -3.5734 -0.0009 8 6 2.2195 -3.5964 0.1219 9 7 1.5594 -4.8181 0.2471 10 6 2.2684 -5.9591 0.3552 11 8 3.4775 -5.9161 0.4389 12 6 1.5588 -7.2885 0.3720 13 6 2.5871 -8.4140 0.5014 14 6 1.8666 -9.7636 0.5192 15 6 2.8950 -10.8891 0.6479 16 6 2.1853 -12.2185 0.6647 17 1 1.1085 -12.2568 0.5906 18 6 2.9107 -13.3859 0.7748 19 7 2.2914 -14.5460 0.7890 20 14 4.7730 -13.3195 0.9037 21 1 5.1676 -13.2320 2.3327 22 1 5.3547 -14.5472 0.3040 23 1 5.2774 -12.1268 0.1770 24 6 1.4878 -2.4177 0.1205 25 1 -0.3633 -1.0232 -0.0955 26 1 -0.3633 0.4289 0.9338 27 1 -0.3633 0.5942 -0.8384 28 1 2.3792 1.5834 -1.0276 29 1 1.6083 2.0285 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.1077 -0.3075 -0.2157 32 1 5.2830 -2.4647 -0.2092 33 1 0.5899 -4.8468 0.2563 34 1 0.8729 -7.3236 1.2184 35 1 0.9989 -7.4132 -0.5548 36 1 3.2727 -8.3789 -0.3452 37 1 3.1474 -8.2894 1.4280 38 1 1.1812 -9.7986 1.3659 39 1 1.3060 -9.8884 -0.4073 40 1 3.5801 -10.8540 -0.1992 41 1 3.4559 -10.7645 1.5741 42 1 2.8017 -15.3672 0.8668 43 1 0.4123 -2.4402 0.2156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588676333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:29 Heat of formation + Delta-G solvation = -16.833102 kcal Electronic energy + Delta-G solvation = -21898.514702 eV Core-core repulsion = 18556.921554 eV Total energy + Delta-G solvation = -3341.593148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74831 -40.31301 -37.90668 -36.66998 -35.76365 -34.58808 -32.15941 -32.08989 -31.08029 -29.03111 -27.65731 -26.37076 -24.39819 -23.76032 -22.50742 -21.64522 -20.92807 -19.08924 -18.82948 -18.11229 -17.40417 -16.99105 -16.76648 -16.33330 -16.12619 -15.93995 -15.69882 -15.15636 -15.06563 -14.85029 -14.65431 -14.62426 -13.80276 -13.70304 -13.51844 -13.38480 -13.27796 -12.95662 -12.85160 -12.33857 -12.24942 -12.06567 -11.88778 -11.74959 -11.50201 -11.35806 -11.30722 -11.25462 -11.05603 -10.75208 -9.95219 -9.27339 -8.59781 -8.29066 -6.31715 0.21863 0.63552 1.35061 1.36560 1.49642 1.74611 1.86055 2.21593 2.36465 3.06261 3.06364 3.49615 3.82425 3.98312 4.02900 4.17257 4.19400 4.22124 4.30940 4.48578 4.53315 4.64617 4.65422 4.66870 4.77781 4.78191 4.84806 4.87587 4.91907 4.97255 5.07495 5.15759 5.22023 5.24653 5.32033 5.61907 5.67413 5.69540 5.78254 6.21598 6.29994 6.31442 6.36300 6.76112 7.11442 7.32990 7.49331 8.87389 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.044273 B = 0.002222 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.283660 B =12595.887792 C =13177.925107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.628 5.628 3 C 0.086 3.914 4 C 0.265 3.735 5 C -0.276 4.276 6 C 0.149 3.851 7 N -0.566 5.566 8 C 0.376 3.624 9 N -0.653 5.653 10 C 0.502 3.498 11 O -0.521 6.521 12 C -0.126 4.126 13 C -0.098 4.098 14 C -0.093 4.093 15 C -0.018 4.018 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.003 3.997 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.254 1.254 24 C -0.287 4.287 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.434 0.566 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 37.999 -2.049 38.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C -0.057 4.057 4 C 0.152 3.848 5 C -0.302 4.302 6 C -0.007 4.007 7 N -0.285 5.285 8 C 0.145 3.855 9 N -0.302 5.302 10 C 0.290 3.710 11 O -0.393 6.393 12 C -0.166 4.166 13 C -0.136 4.136 14 C -0.130 4.130 15 C -0.056 4.056 16 C -0.567 4.567 17 H 0.057 0.943 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.178 1.178 24 C -0.316 4.316 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.274 0.726 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.089 37.157 -1.987 37.434 hybrid contribution -0.081 0.058 0.075 0.125 sum -4.170 37.215 -1.913 37.497 Atomic orbital electron populations 1.21935 0.77796 1.03942 1.02517 1.46523 1.06350 1.02877 1.78086 1.21849 0.97634 0.83948 1.02228 1.17877 0.91346 0.86414 0.89133 1.21748 0.93222 1.00307 1.14900 1.22638 1.00527 0.86400 0.91144 1.67616 1.07981 1.31790 1.21090 1.18469 0.88885 0.85837 0.92267 1.43635 1.11408 1.03589 1.71538 1.21558 0.87937 0.86503 0.74989 1.90787 1.15932 1.87272 1.45276 1.21706 0.99318 0.88563 1.06969 1.21288 0.97458 0.93172 1.01710 1.21330 0.97770 0.92465 1.01477 1.19587 0.96096 0.93840 0.96040 1.21546 0.94292 0.91445 1.49430 0.94320 1.25982 1.03876 0.95030 0.94426 1.70056 1.37934 0.98380 1.52700 0.85710 0.79855 0.78152 0.79262 1.19226 1.20691 1.17766 1.21021 1.01726 0.89698 1.19128 0.90033 0.91462 0.90966 0.92395 0.89465 0.90937 0.82858 0.81825 0.72553 0.85912 0.86163 0.93175 0.92978 0.92172 0.92316 0.96912 0.96947 0.92536 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.60 127.77 1.35 1.82 16 2 N -0.63 -6.69 3.40 -746.74 -2.54 -9.23 16 3 C 0.09 0.51 10.13 127.77 1.29 1.80 16 4 C 0.27 4.38 6.56 38.54 0.25 4.63 16 5 C -0.28 -4.80 9.22 22.50 0.21 -4.60 16 6 C 0.15 3.46 11.16 84.55 0.94 4.41 16 7 N -0.57 -17.09 7.92 -193.33 -1.53 -18.62 16 8 C 0.38 9.22 7.40 132.80 0.98 10.20 16 9 N -0.65 -13.72 5.39 -308.59 -1.66 -15.38 16 10 C 0.50 14.04 7.78 87.66 0.68 14.72 16 11 O -0.52 -20.05 14.28 -3.02 -0.04 -20.09 16 12 C -0.13 -2.94 5.70 29.85 0.17 -2.77 16 13 C -0.10 -3.27 4.50 30.59 0.14 -3.13 16 14 C -0.09 -3.60 5.15 30.59 0.16 -3.45 16 15 C -0.02 -0.90 4.04 29.85 0.12 -0.78 16 16 C -0.53 -31.51 9.66 25.60 0.25 -31.27 16 17 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 18 C 0.00 0.21 5.47 84.66 0.46 0.67 16 19 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 20 Si 0.95 46.76 27.47 68.60 1.88 48.64 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.25 -12.02 6.54 99.48 0.65 -11.37 16 24 C -0.29 -5.04 9.15 22.62 0.21 -4.83 16 25 H 0.08 0.43 5.47 -2.39 -0.01 0.42 16 26 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.22 8.07 -2.38 -0.02 0.20 16 30 H 0.07 0.43 6.51 -2.39 -0.02 0.41 16 31 H 0.15 1.80 6.44 -2.91 -0.02 1.78 16 32 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.43 4.96 8.70 -92.71 -0.81 4.15 16 34 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 41 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 42 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 43 H 0.16 1.74 5.95 -2.91 -0.02 1.72 16 Total: -1.00 -84.06 353.17 3.78 -80.28 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.15 Total: 7.65 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 7.22 Total: -12.57 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -5.43 Total: -103.91 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.04 Total: -20.09 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.64 kcal Total: -84.06 3.78 -80.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588676333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.452 kcal (2) G-P(sol) polarization free energy of solvation -84.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds