Wall clock time and date at job start Tue Mar 31 2020 07:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00165 * 2 1 4 4 C 1.39178 * 111.00008 * 123.95147 * 2 1 3 5 5 N 1.32287 * 119.74287 * 341.61117 * 4 2 1 6 6 C 1.32023 * 121.68760 * 179.70706 * 5 4 2 7 7 C 1.38037 * 120.99070 * 0.57494 * 6 5 4 8 8 C 1.38800 * 119.38474 * 359.45584 * 7 6 5 9 9 C 1.38871 * 118.44625 * 0.25470 * 8 7 6 10 10 N 1.40145 * 120.50899 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00346 * 342.46171 * 10 9 8 12 12 O 1.21289 * 120.00033 * 355.24422 * 11 10 9 13 13 C 1.50696 * 119.99854 * 175.24256 * 11 10 9 14 14 C 1.52997 * 109.47115 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47416 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47207 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47171 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00000 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46837 * 59.99920 * 21 19 17 23 23 H 1.48493 * 109.47246 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47269 * 299.99946 * 21 19 17 25 25 H 1.08997 * 109.47012 * 296.04797 * 1 2 3 26 26 H 1.08999 * 109.46782 * 56.04534 * 1 2 3 27 27 H 1.08991 * 109.47277 * 176.04485 * 1 2 3 28 28 H 1.08997 * 109.47272 * 184.84251 * 3 2 1 29 29 H 1.09001 * 109.47050 * 304.84353 * 3 2 1 30 30 H 1.09003 * 109.47371 * 64.83928 * 3 2 1 31 31 H 1.08003 * 119.49853 * 180.28454 * 6 5 4 32 32 H 1.08002 * 120.30240 * 179.73491 * 7 6 5 33 33 H 1.08001 * 120.77584 * 180.27583 * 8 7 6 34 34 H 0.96998 * 119.99964 * 162.46498 * 10 9 8 35 35 H 1.08998 * 109.47632 * 299.99903 * 13 11 10 36 36 H 1.09005 * 109.47034 * 60.00555 * 13 11 10 37 37 H 1.08995 * 109.47765 * 300.00413 * 14 13 11 38 38 H 1.09003 * 109.46953 * 60.00594 * 14 13 11 39 39 H 1.08998 * 109.47360 * 300.00260 * 15 14 13 40 40 H 1.08998 * 109.47349 * 60.00542 * 15 14 13 41 41 H 1.09003 * 109.47218 * 299.99886 * 16 15 14 42 42 H 1.09003 * 109.47412 * 60.00292 * 16 15 14 43 43 H 0.97002 * 120.00082 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9678 -0.7257 1.0778 5 7 1.1854 -0.9854 2.1124 6 6 1.6169 -1.6751 3.1523 7 6 2.9138 -2.1448 3.2050 8 6 3.7718 -1.8965 2.1426 9 6 3.2907 -1.1737 1.0588 10 7 4.1199 -0.8978 -0.0369 11 6 5.4575 -1.0092 0.0853 12 8 5.9488 -1.2639 1.1645 13 6 6.3426 -0.8174 -1.1192 14 6 7.8061 -0.9955 -0.7102 15 6 8.7048 -0.8001 -1.9328 16 6 10.1683 -0.9789 -1.5238 17 6 11.0536 -0.7858 -2.7280 18 1 10.6161 -0.5588 -3.6891 19 6 12.4220 -0.8991 -2.6029 20 7 12.9547 -1.1760 -1.4328 21 14 13.5194 -0.6590 -4.0955 22 1 13.3208 0.7078 -4.6411 23 1 14.9398 -0.8314 -3.6983 24 1 13.1699 -1.6620 -5.1333 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0251 -0.0709 28 1 3.0816 1.3437 -0.0867 29 1 1.5776 1.9210 -0.8434 30 1 1.7178 1.8673 0.9302 31 1 0.9463 -1.8706 3.9760 32 1 3.2563 -2.7041 4.0631 33 1 4.7897 -2.2573 2.1583 34 1 3.7311 -0.6266 -0.8831 35 1 6.0855 -1.5541 -1.8802 36 1 6.1975 0.1856 -1.5207 37 1 8.0631 -0.2585 0.0507 38 1 7.9516 -1.9983 -0.3084 39 1 8.4481 -1.5369 -2.6940 40 1 8.5594 0.2028 -2.3342 41 1 10.4254 -0.2424 -0.7625 42 1 10.3136 -1.9820 -1.1227 43 1 13.9174 -1.2553 -1.3447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588870739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:18 Heat of formation + Delta-G solvation = 0.568091 kcal Electronic energy + Delta-G solvation = -22435.549872 eV Core-core repulsion = 19094.711297 eV Total energy + Delta-G solvation = -3340.838575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33448 -39.60496 -37.17544 -35.41278 -34.84277 -32.73740 -31.85275 -30.43302 -29.24632 -28.07359 -25.85102 -25.31045 -23.78192 -22.15770 -21.95550 -20.33961 -20.04260 -18.20904 -17.37717 -17.12169 -16.22969 -16.15547 -15.75422 -15.57401 -15.13944 -14.51372 -14.39658 -14.28559 -14.10540 -13.61554 -13.30838 -12.88965 -12.66263 -12.54676 -12.40998 -12.23235 -12.07989 -11.75449 -11.63644 -11.17684 -10.99396 -10.58021 -10.55743 -10.45384 -10.39051 -10.02456 -9.65843 -9.63859 -9.27790 -9.08275 -8.99199 -8.31614 -8.12133 -5.96504 -3.99217 0.80849 1.07989 2.49687 2.82052 3.20638 3.34517 3.39068 3.41156 3.62288 4.25781 4.47237 4.52348 4.67364 4.80221 4.92010 4.96302 5.01539 5.14624 5.20687 5.25105 5.26310 5.34068 5.38865 5.42208 5.63874 5.68202 5.75698 5.96811 6.06373 6.07216 6.23037 6.28534 6.40992 6.48815 6.78568 6.87130 6.96129 7.15296 7.20694 7.69250 7.71877 7.87516 7.96648 8.04464 8.46078 9.08241 9.64559 11.14775 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.002458 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.450469 B =11390.061349 C =12086.564316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.489 5.489 3 C 0.023 3.977 4 C 0.262 3.738 5 N -0.496 5.496 6 C 0.086 3.914 7 C -0.162 4.162 8 C -0.092 4.092 9 C 0.116 3.884 10 N -0.663 5.663 11 C 0.511 3.489 12 O -0.514 6.514 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.172 0.828 34 H 0.418 0.582 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.770 1.652 5.105 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.209 5.209 3 C -0.124 4.124 4 C 0.028 3.972 5 N -0.209 5.209 6 C -0.073 4.073 7 C -0.184 4.184 8 C -0.120 4.120 9 C 0.016 3.984 10 N -0.307 5.307 11 C 0.301 3.699 12 O -0.389 6.389 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.189 0.811 34 H 0.256 0.744 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.881 1.557 5.422 27.467 hybrid contribution 0.960 0.277 -0.496 1.115 sum -25.922 1.834 4.925 26.449 Atomic orbital electron populations 1.22228 0.84614 1.03020 1.01266 1.59630 1.10851 1.14081 1.36379 1.22527 1.01323 0.86639 1.01871 1.19479 0.89683 0.98303 0.89722 1.67584 1.37572 1.15459 1.00289 1.22426 0.94363 0.95088 0.95377 1.22070 0.94391 1.02018 0.99873 1.22260 1.02798 0.95164 0.91816 1.18385 0.90316 0.98949 0.90774 1.43722 1.06188 1.67338 1.13455 1.21441 0.81435 0.75356 0.91685 1.90589 1.74161 1.45760 1.28424 1.21840 0.96546 1.04293 0.95022 1.21479 0.90146 1.02879 0.99700 1.21651 0.97772 1.00083 0.95297 1.19090 0.88764 0.97207 0.96619 1.21241 0.91422 1.48006 0.95310 0.92796 1.25038 0.98309 0.95404 0.95786 1.69961 1.11465 1.48990 1.23067 0.86670 0.79566 0.78656 0.83161 1.20280 1.21317 1.20267 0.93365 0.91176 0.91092 0.90789 0.89873 0.94344 0.82767 0.84425 0.81114 0.74429 0.88499 0.88670 0.91661 0.91639 0.93375 0.93390 0.96599 0.96584 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 8.90 60.06 0.53 0.82 16 2 N -0.49 -4.46 4.36 -188.77 -0.82 -5.29 16 3 C 0.02 0.18 9.21 60.07 0.55 0.73 16 4 C 0.26 2.93 6.02 -154.74 -0.93 2.00 16 5 N -0.50 -5.59 8.81 -12.26 -0.11 -5.70 16 6 C 0.09 0.83 11.17 -17.54 -0.20 0.63 16 7 C -0.16 -1.62 10.10 -39.45 -0.40 -2.01 16 8 C -0.09 -1.13 8.93 -39.14 -0.35 -1.48 16 9 C 0.12 1.38 6.37 -83.28 -0.53 0.85 16 10 N -0.66 -7.07 4.42 -9.61 -0.04 -7.11 16 11 C 0.51 6.61 7.71 -10.99 -0.08 6.53 16 12 O -0.51 -8.37 12.83 5.55 0.07 -8.30 16 13 C -0.14 -1.66 5.70 -27.89 -0.16 -1.82 16 14 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 15 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.59 6.81 -51.93 -0.35 0.23 16 29 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.17 2.35 5.37 -52.49 -0.28 2.07 16 34 H 0.42 3.50 7.68 -40.82 -0.31 3.19 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -33.42 355.10 -9.00 -42.43 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.80 Total: -0.28 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.37 Total: -11.23 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.24 Total: -44.71 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.42 -9.00 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588870739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.995 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds