Wall clock time and date at job start Tue Mar 31 2020 07:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00165 * 2 1 4 4 C 1.39178 * 111.00008 * 123.95147 * 2 1 3 5 5 N 1.32287 * 119.74287 * 341.61117 * 4 2 1 6 6 C 1.32023 * 121.68760 * 179.70706 * 5 4 2 7 7 C 1.38037 * 120.99070 * 0.57494 * 6 5 4 8 8 C 1.38800 * 119.38474 * 359.45584 * 7 6 5 9 9 C 1.38871 * 118.44625 * 0.25470 * 8 7 6 10 10 N 1.40145 * 120.50899 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00346 * 342.46171 * 10 9 8 12 12 O 1.21289 * 120.00033 * 355.24422 * 11 10 9 13 13 C 1.50696 * 119.99854 * 175.24256 * 11 10 9 14 14 C 1.52997 * 109.47115 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47416 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47207 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47171 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00000 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46837 * 59.99920 * 21 19 17 23 23 H 1.48493 * 109.47246 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47269 * 299.99946 * 21 19 17 25 25 H 1.08997 * 109.47012 * 296.04797 * 1 2 3 26 26 H 1.08999 * 109.46782 * 56.04534 * 1 2 3 27 27 H 1.08991 * 109.47277 * 176.04485 * 1 2 3 28 28 H 1.08997 * 109.47272 * 184.84251 * 3 2 1 29 29 H 1.09001 * 109.47050 * 304.84353 * 3 2 1 30 30 H 1.09003 * 109.47371 * 64.83928 * 3 2 1 31 31 H 1.08003 * 119.49853 * 180.28454 * 6 5 4 32 32 H 1.08002 * 120.30240 * 179.73491 * 7 6 5 33 33 H 1.08001 * 120.77584 * 180.27583 * 8 7 6 34 34 H 0.96998 * 119.99964 * 162.46498 * 10 9 8 35 35 H 1.08998 * 109.47632 * 299.99903 * 13 11 10 36 36 H 1.09005 * 109.47034 * 60.00555 * 13 11 10 37 37 H 1.08995 * 109.47765 * 300.00413 * 14 13 11 38 38 H 1.09003 * 109.46953 * 60.00594 * 14 13 11 39 39 H 1.08998 * 109.47360 * 300.00260 * 15 14 13 40 40 H 1.08998 * 109.47349 * 60.00542 * 15 14 13 41 41 H 1.09003 * 109.47218 * 299.99886 * 16 15 14 42 42 H 1.09003 * 109.47412 * 60.00292 * 16 15 14 43 43 H 0.97002 * 120.00082 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9678 -0.7257 1.0778 5 7 1.1854 -0.9854 2.1124 6 6 1.6169 -1.6751 3.1523 7 6 2.9138 -2.1448 3.2050 8 6 3.7718 -1.8965 2.1426 9 6 3.2907 -1.1737 1.0588 10 7 4.1199 -0.8978 -0.0369 11 6 5.4575 -1.0092 0.0853 12 8 5.9488 -1.2639 1.1645 13 6 6.3426 -0.8174 -1.1192 14 6 7.8061 -0.9955 -0.7102 15 6 8.7048 -0.8001 -1.9328 16 6 10.1683 -0.9789 -1.5238 17 6 11.0536 -0.7858 -2.7280 18 1 10.6161 -0.5588 -3.6891 19 6 12.4220 -0.8991 -2.6029 20 7 12.9547 -1.1760 -1.4328 21 14 13.5194 -0.6590 -4.0955 22 1 13.3208 0.7078 -4.6411 23 1 14.9398 -0.8314 -3.6983 24 1 13.1699 -1.6620 -5.1333 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0251 -0.0709 28 1 3.0816 1.3437 -0.0867 29 1 1.5776 1.9210 -0.8434 30 1 1.7178 1.8673 0.9302 31 1 0.9463 -1.8706 3.9760 32 1 3.2563 -2.7041 4.0631 33 1 4.7897 -2.2573 2.1583 34 1 3.7311 -0.6266 -0.8831 35 1 6.0855 -1.5541 -1.8802 36 1 6.1975 0.1856 -1.5207 37 1 8.0631 -0.2585 0.0507 38 1 7.9516 -1.9983 -0.3084 39 1 8.4481 -1.5369 -2.6940 40 1 8.5594 0.2028 -2.3342 41 1 10.4254 -0.2424 -0.7625 42 1 10.3136 -1.9820 -1.1227 43 1 13.9174 -1.2553 -1.3447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588870739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:18 Heat of formation + Delta-G solvation = -20.407509 kcal Electronic energy + Delta-G solvation = -22436.459443 eV Core-core repulsion = 19094.711297 eV Total energy + Delta-G solvation = -3341.748145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.19429 -40.55953 -37.88242 -36.77856 -36.07540 -34.64267 -32.80304 -31.69878 -30.47355 -28.68655 -27.51852 -26.04802 -25.02476 -23.59515 -22.73094 -21.75072 -21.31952 -19.09107 -18.43204 -18.11147 -18.02376 -17.17605 -16.75257 -16.50621 -16.31288 -15.91364 -15.57573 -15.29907 -15.00691 -14.53716 -14.46777 -14.25313 -13.79409 -13.59343 -13.53859 -13.29846 -13.15963 -12.95216 -12.79199 -12.68161 -12.37458 -12.15975 -12.14612 -12.07856 -11.38335 -11.35375 -11.26591 -11.06289 -10.82012 -10.53283 -10.48887 -9.89059 -8.92975 -8.17812 -6.29776 -0.00939 0.21564 1.41103 1.44812 1.52619 1.53160 1.91005 2.42720 2.49690 2.81732 3.15024 3.51356 3.62535 3.89868 3.98247 4.09688 4.14615 4.17755 4.32379 4.34996 4.44800 4.58306 4.65907 4.68308 4.71126 4.81981 4.85189 4.87149 4.92081 5.04079 5.19094 5.20212 5.23112 5.34422 5.39803 5.54593 5.58443 5.67166 5.80131 5.89773 6.09503 6.26512 6.34250 6.88851 6.89244 7.03334 7.39885 8.94155 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.002458 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.450469 B =11390.061349 C =12086.564316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.491 5.491 3 C 0.024 3.976 4 C 0.259 3.741 5 N -0.510 5.510 6 C 0.087 3.913 7 C -0.163 4.163 8 C -0.112 4.112 9 C 0.097 3.903 10 N -0.646 5.646 11 C 0.513 3.487 12 O -0.556 6.556 13 C -0.125 4.125 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.019 3.981 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.186 0.814 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.430 0.570 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.062 0.938 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.603 2.390 3.207 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.211 5.211 3 C -0.122 4.122 4 C 0.025 3.975 5 N -0.223 5.223 6 C -0.071 4.071 7 C -0.183 4.183 8 C -0.141 4.141 9 C -0.003 4.003 10 N -0.291 5.291 11 C 0.303 3.697 12 O -0.434 6.434 13 C -0.165 4.165 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.018 4.018 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.047 0.953 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.270 0.730 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.766 2.307 3.492 29.069 hybrid contribution 1.475 0.030 0.177 1.486 sum -27.290 2.337 3.670 27.635 Atomic orbital electron populations 1.22253 0.83790 1.02914 1.01885 1.59677 1.11549 1.14580 1.35268 1.22584 1.01229 0.85920 1.02471 1.19681 0.89358 0.98226 0.90205 1.67678 1.37833 1.16046 1.00765 1.22960 0.94642 0.93822 0.95657 1.22321 0.94293 1.01841 0.99877 1.22257 1.02478 0.96166 0.93159 1.18495 0.90923 0.99783 0.91117 1.43476 1.05296 1.66501 1.13805 1.21522 0.82131 0.74815 0.91242 1.90597 1.74987 1.47847 1.29937 1.21708 0.92740 1.06932 0.95080 1.21258 0.93136 1.01213 0.97831 1.21445 0.93985 1.01263 0.96669 1.19055 0.93091 0.94368 0.95329 1.21741 0.92245 1.47690 0.96317 0.91573 1.26077 1.00231 0.94917 0.99144 1.70122 1.11896 1.50135 1.25703 0.85461 0.77031 0.79307 0.79009 1.18913 1.21163 1.18928 0.94195 0.88806 0.91835 0.91166 0.87332 0.95320 0.79717 0.82220 0.83055 0.72988 0.85841 0.85689 0.93527 0.93521 0.92038 0.91954 0.99674 0.99682 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 8.90 127.69 1.14 1.67 16 2 N -0.49 -8.08 4.36 -751.13 -3.28 -11.36 16 3 C 0.02 0.32 9.21 127.69 1.18 1.50 16 4 C 0.26 5.53 6.02 133.17 0.80 6.33 16 5 N -0.51 -10.88 8.81 -192.71 -1.70 -12.58 16 6 C 0.09 1.55 11.17 84.62 0.94 2.50 16 7 C -0.16 -3.12 10.10 22.36 0.23 -2.89 16 8 C -0.11 -2.79 8.93 22.56 0.20 -2.59 16 9 C 0.10 2.27 6.37 38.31 0.24 2.51 16 10 N -0.65 -13.11 4.42 -302.71 -1.34 -14.45 16 11 C 0.51 13.00 7.71 87.66 0.68 13.67 16 12 O -0.56 -18.70 12.83 -3.06 -0.04 -18.74 16 13 C -0.13 -2.80 5.70 29.85 0.17 -2.63 16 14 C -0.10 -3.25 4.50 30.59 0.14 -3.11 16 15 C -0.10 -3.77 5.15 30.59 0.16 -3.61 16 16 C 0.02 1.01 4.97 29.85 0.15 1.16 16 17 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 19 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 20 N -0.94 -58.72 13.29 21.44 0.28 -58.44 16 21 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H 0.04 0.62 7.67 -2.39 -0.02 0.60 16 26 H 0.09 0.84 8.11 -2.39 -0.02 0.82 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.99 6.81 -2.39 -0.02 0.97 16 29 H 0.11 0.88 8.11 -2.39 -0.02 0.86 16 30 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.15 4.40 5.37 -2.92 -0.02 4.39 16 34 H 0.43 6.33 7.68 -92.71 -0.71 5.62 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 38 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 43 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -74.92 355.10 2.96 -71.96 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.29 Total: 13.36 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 6.72 Total: -16.25 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -6.03 Total: -96.82 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.04 Total: -18.74 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.92 2.96 -71.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588870739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.556 kcal (2) G-P(sol) polarization free energy of solvation -74.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds