Wall clock time and date at job start Tue Mar 31 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35909 * 117.00049 * 2 1 4 4 C 1.38754 * 120.47605 * 359.97438 * 3 2 1 5 5 N 1.31806 * 120.68327 * 180.28054 * 4 3 2 6 6 C 1.31885 * 121.78203 * 359.47092 * 5 4 3 7 7 C 1.38206 * 120.88485 * 0.52893 * 6 5 4 8 8 C 1.50697 * 120.38868 * 179.77066 * 7 6 5 9 9 N 1.46910 * 109.46878 * 269.97719 * 8 7 6 10 10 C 1.46961 * 110.99324 * 293.79624 * 9 8 7 11 11 C 1.53058 * 109.35883 * 176.81087 * 10 9 8 12 12 N 1.46955 * 109.36154 * 58.40075 * 11 10 9 13 13 C 1.46910 * 110.99746 * 176.80812 * 12 11 10 14 14 C 1.50694 * 109.47184 * 293.80314 * 13 12 11 15 15 H 1.08007 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99961 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99927 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99963 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47416 * 90.00117 * 18 16 14 20 20 H 1.48505 * 109.46905 * 210.00236 * 18 16 14 21 21 H 1.48500 * 109.47036 * 329.99989 * 18 16 14 22 22 C 1.46952 * 110.88553 * 300.67559 * 12 11 10 23 23 C 1.46952 * 110.99855 * 170.00068 * 9 8 7 24 24 C 1.38576 * 119.22566 * 359.74263 * 7 6 5 25 25 H 1.09000 * 109.47603 * 300.00191 * 1 2 3 26 26 H 1.09004 * 109.46808 * 60.00452 * 1 2 3 27 27 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.65394 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.55290 * 180.29264 * 6 5 4 30 30 H 1.09001 * 109.47601 * 29.97229 * 8 7 6 31 31 H 1.08994 * 109.47919 * 149.97770 * 8 7 6 32 32 H 1.08997 * 109.49301 * 296.77373 * 10 9 8 33 33 H 1.08997 * 109.49220 * 56.84954 * 10 9 8 34 34 H 1.08995 * 109.48759 * 298.43348 * 11 10 9 35 35 H 1.09000 * 109.50413 * 178.37663 * 11 10 9 36 36 H 1.08992 * 109.46601 * 53.80216 * 13 12 11 37 37 H 1.08999 * 109.46874 * 173.79936 * 13 12 11 38 38 H 0.97005 * 119.99469 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.49114 * 299.36106 * 22 12 11 40 40 H 1.08997 * 109.49259 * 179.28616 * 22 12 11 41 41 H 1.09004 * 109.48886 * 303.15041 * 23 9 8 42 42 H 1.08995 * 109.49441 * 63.22058 * 23 9 8 43 43 H 1.08002 * 120.81543 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0061 6 6 3.2080 3.6722 -0.0010 7 6 4.0179 2.5523 -0.0004 8 6 5.5180 2.6964 0.0003 9 7 6.0061 2.7425 -1.3846 10 6 5.7816 1.4593 -2.0649 11 6 6.2296 1.5734 -3.5240 12 7 7.6495 1.9492 -3.5697 13 6 8.1376 1.9952 -4.9546 14 6 8.1185 0.6069 -5.5403 15 1 7.7782 -0.2265 -4.9434 16 6 8.5353 0.4004 -6.8382 17 7 8.5191 -0.8114 -7.3492 18 14 9.1246 1.8415 -7.8703 19 1 10.5886 2.0135 -7.6904 20 1 8.8292 1.5786 -9.3018 21 1 8.4243 3.0781 -7.4394 22 6 7.8740 3.2323 -2.8894 23 6 7.4260 3.1181 -1.4303 24 6 3.4345 1.2953 0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2213 2.3268 -0.0014 29 1 3.6569 4.6544 -0.0010 30 1 5.7944 3.6174 0.5136 31 1 5.9646 1.8456 0.5147 32 1 6.3571 0.6785 -1.5679 33 1 4.7213 1.2090 -2.0287 34 1 5.6353 2.3354 -4.0283 35 1 6.0909 0.6145 -4.0234 36 1 7.4943 2.6475 -5.5450 37 1 9.1569 2.3812 -4.9679 38 1 8.8121 -0.9565 -8.2625 39 1 7.2985 4.0131 -3.3864 40 1 8.9343 3.4825 -2.9256 41 1 7.5647 4.0773 -0.9313 42 1 8.0202 2.3562 -0.9260 43 1 4.0429 0.4030 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588963770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:45 Heat of formation + Delta-G solvation = 18.728580 kcal Electronic energy + Delta-G solvation = -23179.566416 eV Core-core repulsion = 19839.515338 eV Total energy + Delta-G solvation = -3340.051077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89677 -39.01277 -38.18061 -35.52632 -32.99612 -32.17523 -30.96825 -30.47334 -28.72550 -27.79901 -26.29182 -24.03321 -23.70102 -23.07893 -21.54936 -21.00751 -19.26493 -18.04568 -17.20803 -16.85063 -16.79638 -16.20310 -15.84185 -14.91936 -14.73906 -14.45680 -14.39903 -14.16164 -13.87270 -13.56305 -13.37350 -13.30786 -13.06483 -12.51490 -12.23515 -12.09274 -11.96977 -11.90200 -11.76945 -11.42293 -10.96328 -10.82713 -10.59111 -10.42164 -10.09003 -9.84667 -9.65687 -9.60270 -9.25955 -8.61925 -8.56499 -8.23171 -7.36688 -6.05082 -4.02425 0.90289 1.13417 2.89925 3.28931 3.36408 3.38995 3.54186 4.14606 4.28882 4.42488 4.43233 4.62764 4.74825 4.77024 4.82161 4.82816 4.98806 5.09597 5.16991 5.23947 5.27230 5.43913 5.48682 5.53872 5.68684 5.73537 5.79439 5.84866 5.98668 6.04604 6.12297 6.29981 6.31661 6.49461 6.63802 6.83756 6.96207 6.97398 7.10749 7.20433 7.59867 7.78857 7.90942 8.05057 8.66048 9.02743 9.56789 11.07979 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.003494 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.010396 B = 8011.171948 C = 8844.607261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.076 3.924 4 C 0.013 3.987 5 N -0.452 5.452 6 C 0.081 3.919 7 C -0.081 4.081 8 C 0.096 3.904 9 N -0.535 5.535 10 C 0.055 3.945 11 C 0.068 3.932 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.509 4.509 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.054 3.946 23 C 0.062 3.938 24 C -0.102 4.102 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.092 0.908 36 H -0.011 1.011 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 6.639 17.801 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.029 3.971 4 C -0.145 4.145 5 N -0.160 5.160 6 C -0.078 4.078 7 C -0.084 4.084 8 C -0.033 4.033 9 N -0.260 5.260 10 C -0.073 4.073 11 C -0.060 4.060 12 N -0.254 5.254 13 C 0.036 3.964 14 C -0.548 4.548 15 H 0.098 0.902 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.076 4.076 23 C -0.066 4.066 24 C -0.129 4.129 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.007 0.993 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.258 7.075 17.613 23.152 hybrid contribution 0.588 -0.021 -0.768 0.968 sum -12.670 7.055 16.844 22.227 Atomic orbital electron populations 1.23114 0.78039 1.04371 1.01503 1.86098 1.21606 1.26067 1.88563 1.20036 0.93078 0.85748 0.98225 1.22860 1.00396 0.87323 1.03953 1.67544 1.12203 1.26386 1.09905 1.22524 0.88317 0.98728 0.98186 1.20626 0.97044 0.92780 0.97944 1.20961 0.89413 1.02074 0.90806 1.62213 1.18373 1.31959 1.13419 1.22336 1.00274 0.89129 0.95579 1.22010 0.88426 1.01897 0.93707 1.62117 1.16803 1.27479 1.19047 1.20150 0.94454 0.98053 0.83697 1.21027 1.43494 0.92659 0.97584 0.90208 1.24900 0.95359 0.95480 0.97594 1.69900 1.48175 1.20424 1.15459 0.86861 0.79565 0.83546 0.79793 1.20153 1.21207 1.19253 1.22116 1.00102 0.92110 0.93221 1.22158 0.86919 0.99931 0.97569 1.20889 0.91678 0.98608 1.01742 0.92517 0.92336 0.87893 0.82768 0.82481 0.89397 0.93454 0.94017 0.90933 0.95332 0.89008 0.99319 0.95814 0.92678 0.95031 0.90869 0.90871 0.93957 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.31 10.51 -19.46 -0.20 -3.52 16 3 C 0.08 0.88 6.71 -39.07 -0.26 0.62 16 4 C 0.01 0.14 10.22 -17.37 -0.18 -0.03 16 5 N -0.45 -5.67 10.36 -13.13 -0.14 -5.80 16 6 C 0.08 0.94 10.85 -17.54 -0.19 0.75 16 7 C -0.08 -0.93 4.90 -104.51 -0.51 -1.44 16 8 C 0.10 1.04 5.14 -4.97 -0.03 1.02 16 9 N -0.53 -7.44 4.70 -235.90 -1.11 -8.55 16 10 C 0.05 0.87 5.28 -3.76 -0.02 0.85 16 11 C 0.07 1.34 5.43 -3.76 -0.02 1.32 16 12 N -0.53 -11.18 4.70 -235.91 -1.11 -12.29 16 13 C 0.16 3.99 3.79 -4.97 -0.02 3.97 16 14 C -0.51 -14.52 9.03 -34.44 -0.31 -14.84 16 15 H 0.08 2.47 7.38 -52.48 -0.39 2.08 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C 0.05 0.91 5.61 -3.77 -0.02 0.89 16 23 C 0.06 0.86 5.61 -3.77 -0.02 0.84 16 24 C -0.10 -1.20 8.04 -39.14 -0.31 -1.51 16 25 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 26 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.16 1.29 6.32 -52.49 -0.33 0.96 16 29 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.09 0.79 7.98 -51.93 -0.41 0.37 16 31 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.10 5.97 -51.93 -0.31 0.79 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 2.01 6.79 -51.93 -0.35 1.66 16 36 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 37 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.14 1.57 8.03 -52.49 -0.42 1.15 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -32.61 342.08 -9.03 -41.65 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.73 Total: -2.18 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.00 Total: -4.54 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -1.58 Total: -53.52 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.20 Total: -3.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.61 -9.03 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588963770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.375 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds