Wall clock time and date at job start Tue Mar 31 2020 07:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35909 * 117.00049 * 2 1 4 4 C 1.38754 * 120.47605 * 359.97438 * 3 2 1 5 5 N 1.31806 * 120.68327 * 180.28054 * 4 3 2 6 6 C 1.31885 * 121.78203 * 359.47092 * 5 4 3 7 7 C 1.38206 * 120.88485 * 0.52893 * 6 5 4 8 8 C 1.50697 * 120.38868 * 179.77066 * 7 6 5 9 9 N 1.46910 * 109.46878 * 269.97719 * 8 7 6 10 10 C 1.46961 * 110.99324 * 293.79624 * 9 8 7 11 11 C 1.53058 * 109.35883 * 176.81087 * 10 9 8 12 12 N 1.46955 * 109.36154 * 58.40075 * 11 10 9 13 13 C 1.46910 * 110.99746 * 176.80812 * 12 11 10 14 14 C 1.50694 * 109.47184 * 293.80314 * 13 12 11 15 15 H 1.08007 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99961 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99927 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99963 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47416 * 90.00117 * 18 16 14 20 20 H 1.48505 * 109.46905 * 210.00236 * 18 16 14 21 21 H 1.48500 * 109.47036 * 329.99989 * 18 16 14 22 22 C 1.46952 * 110.88553 * 300.67559 * 12 11 10 23 23 C 1.46952 * 110.99855 * 170.00068 * 9 8 7 24 24 C 1.38576 * 119.22566 * 359.74263 * 7 6 5 25 25 H 1.09000 * 109.47603 * 300.00191 * 1 2 3 26 26 H 1.09004 * 109.46808 * 60.00452 * 1 2 3 27 27 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.65394 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.55290 * 180.29264 * 6 5 4 30 30 H 1.09001 * 109.47601 * 29.97229 * 8 7 6 31 31 H 1.08994 * 109.47919 * 149.97770 * 8 7 6 32 32 H 1.08997 * 109.49301 * 296.77373 * 10 9 8 33 33 H 1.08997 * 109.49220 * 56.84954 * 10 9 8 34 34 H 1.08995 * 109.48759 * 298.43348 * 11 10 9 35 35 H 1.09000 * 109.50413 * 178.37663 * 11 10 9 36 36 H 1.08992 * 109.46601 * 53.80216 * 13 12 11 37 37 H 1.08999 * 109.46874 * 173.79936 * 13 12 11 38 38 H 0.97005 * 119.99469 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.49114 * 299.36106 * 22 12 11 40 40 H 1.08997 * 109.49259 * 179.28616 * 22 12 11 41 41 H 1.09004 * 109.48886 * 303.15041 * 23 9 8 42 42 H 1.08995 * 109.49441 * 63.22058 * 23 9 8 43 43 H 1.08002 * 120.81543 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0061 6 6 3.2080 3.6722 -0.0010 7 6 4.0179 2.5523 -0.0004 8 6 5.5180 2.6964 0.0003 9 7 6.0061 2.7425 -1.3846 10 6 5.7816 1.4593 -2.0649 11 6 6.2296 1.5734 -3.5240 12 7 7.6495 1.9492 -3.5697 13 6 8.1376 1.9952 -4.9546 14 6 8.1185 0.6069 -5.5403 15 1 7.7782 -0.2265 -4.9434 16 6 8.5353 0.4004 -6.8382 17 7 8.5191 -0.8114 -7.3492 18 14 9.1246 1.8415 -7.8703 19 1 10.5886 2.0135 -7.6904 20 1 8.8292 1.5786 -9.3018 21 1 8.4243 3.0781 -7.4394 22 6 7.8740 3.2323 -2.8894 23 6 7.4260 3.1181 -1.4303 24 6 3.4345 1.2953 0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2213 2.3268 -0.0014 29 1 3.6569 4.6544 -0.0010 30 1 5.7944 3.6174 0.5136 31 1 5.9646 1.8456 0.5147 32 1 6.3571 0.6785 -1.5679 33 1 4.7213 1.2090 -2.0287 34 1 5.6353 2.3354 -4.0283 35 1 6.0909 0.6145 -4.0234 36 1 7.4943 2.6475 -5.5450 37 1 9.1569 2.3812 -4.9679 38 1 8.8121 -0.9565 -8.2625 39 1 7.2985 4.0131 -3.3864 40 1 8.9343 3.4825 -2.9256 41 1 7.5647 4.0773 -0.9313 42 1 8.0202 2.3562 -0.9260 43 1 4.0429 0.4030 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588963770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:44 Heat of formation + Delta-G solvation = -6.120360 kcal Electronic energy + Delta-G solvation = -23180.643947 eV Core-core repulsion = 19839.515338 eV Total energy + Delta-G solvation = -3341.128608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72900 -40.20927 -39.08549 -36.90855 -34.73474 -33.57046 -31.90561 -31.80266 -30.31706 -28.51894 -27.60604 -25.34693 -24.73194 -24.27905 -22.98421 -22.29552 -20.66159 -18.96339 -18.82973 -18.02683 -17.66426 -17.30117 -16.79035 -16.38284 -15.97249 -15.87521 -15.71504 -15.32620 -15.15616 -14.99974 -14.53121 -14.30517 -14.16323 -14.05335 -13.62533 -13.22308 -13.15618 -12.87275 -12.73157 -12.69756 -12.41204 -12.29379 -12.18280 -11.99106 -11.83446 -11.56286 -11.35104 -10.79132 -10.53606 -10.47671 -9.44286 -9.33908 -9.04486 -8.29547 -6.33158 0.05283 0.27279 1.33993 1.35709 1.46499 2.21891 2.33574 2.64380 3.03194 3.11223 3.21640 3.50851 3.63081 3.79279 3.94620 4.01719 4.09099 4.17789 4.22308 4.31346 4.36907 4.37423 4.45583 4.50788 4.64235 4.65320 4.73216 4.77610 4.81922 4.87684 4.95592 4.96698 5.00665 5.08873 5.16807 5.22412 5.51123 5.51729 5.90559 6.00081 6.10161 6.22857 6.34524 6.64575 6.72564 6.94148 7.30599 8.87033 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.003494 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.010396 B = 8011.171948 C = 8844.607261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.070 3.930 4 C 0.010 3.990 5 N -0.472 5.472 6 C 0.073 3.927 7 C -0.084 4.084 8 C 0.100 3.900 9 N -0.540 5.540 10 C 0.071 3.929 11 C 0.072 3.928 12 N -0.544 5.544 13 C 0.173 3.827 14 C -0.518 4.518 15 H 0.036 0.964 16 C 0.008 3.992 17 N -0.947 5.947 18 Si 0.949 3.051 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.254 1.254 22 C 0.050 3.950 23 C 0.068 3.932 24 C -0.117 4.117 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.019 0.981 35 H 0.055 0.945 36 H -0.017 1.017 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.030 0.970 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.041 0.959 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.962 9.056 19.062 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.022 3.978 4 C -0.148 4.148 5 N -0.181 5.181 6 C -0.084 4.084 7 C -0.087 4.087 8 C -0.027 4.027 9 N -0.265 5.265 10 C -0.058 4.058 11 C -0.056 4.056 12 N -0.269 5.269 13 C 0.046 3.954 14 C -0.556 4.556 15 H 0.055 0.945 16 C -0.189 4.189 17 N -0.588 5.588 18 Si 0.772 3.228 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.178 1.178 22 C -0.078 4.078 23 C -0.059 4.059 24 C -0.144 4.144 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.195 0.805 29 H 0.192 0.808 30 H 0.135 0.865 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.001 0.999 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.059 0.941 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.358 9.503 18.910 25.026 hybrid contribution 0.514 -0.876 -1.092 1.491 sum -12.844 8.627 17.818 23.598 Atomic orbital electron populations 1.23419 0.75978 1.05968 1.02571 1.86080 1.23835 1.25868 1.88451 1.20154 0.93212 0.86286 0.98138 1.23216 1.01528 0.86847 1.03215 1.67580 1.12801 1.27043 1.10684 1.22837 0.88223 0.99537 0.97839 1.20675 0.97361 0.92577 0.98074 1.21040 0.88869 1.03873 0.88957 1.62174 1.18661 1.30205 1.15424 1.22061 1.00247 0.90388 0.93057 1.21891 0.87953 0.99543 0.96235 1.62039 1.17338 1.30416 1.17139 1.19908 0.94818 0.95105 0.85606 1.21250 1.43015 0.93635 0.97680 0.94538 1.25854 0.95475 0.98595 0.99011 1.70056 1.49584 1.23034 1.16146 0.85695 0.79632 0.79825 0.77665 1.18668 1.20712 1.17795 1.22280 1.00997 0.89711 0.94850 1.22167 0.86571 1.01901 0.95291 1.21068 0.92193 0.98951 1.02161 0.90953 0.91694 0.86171 0.80547 0.80799 0.86496 0.92818 0.94600 0.90397 0.96261 0.92675 0.99898 0.95029 0.92401 0.95205 0.89780 0.87033 0.94091 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.82 113.37 1.11 1.28 16 2 O -0.33 -6.79 10.51 -92.53 -0.97 -7.76 16 3 C 0.07 1.54 6.71 22.60 0.15 1.70 16 4 C 0.01 0.21 10.22 84.82 0.87 1.07 16 5 N -0.47 -11.12 10.36 -195.44 -2.02 -13.14 16 6 C 0.07 1.57 10.85 84.68 0.92 2.48 16 7 C -0.08 -1.78 4.90 -19.79 -0.10 -1.88 16 8 C 0.10 1.89 5.14 85.55 0.44 2.33 16 9 N -0.54 -13.79 4.70 -900.25 -4.23 -18.03 16 10 C 0.07 2.23 5.28 86.31 0.46 2.68 16 11 C 0.07 2.94 5.43 86.31 0.47 3.41 16 12 N -0.54 -23.02 4.70 -900.28 -4.23 -27.25 16 13 C 0.17 8.49 3.79 85.55 0.32 8.81 16 14 C -0.52 -30.54 9.03 25.60 0.23 -30.31 16 15 H 0.04 2.40 7.38 -2.91 -0.02 2.38 16 16 C 0.01 0.47 5.47 84.65 0.46 0.93 16 17 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 18 Si 0.95 44.62 27.47 68.60 1.88 46.51 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 22 C 0.05 1.60 5.61 86.31 0.48 2.09 16 23 C 0.07 1.68 5.61 86.31 0.48 2.16 16 24 C -0.12 -2.65 8.04 22.56 0.18 -2.47 16 25 H 0.07 0.59 7.68 -2.39 -0.02 0.58 16 26 H 0.06 0.65 7.68 -2.39 -0.02 0.64 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.18 2.64 6.32 -2.91 -0.02 2.62 16 29 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 30 H 0.12 1.58 7.98 -2.39 -0.02 1.56 16 31 H 0.05 0.99 8.07 -2.39 -0.02 0.97 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 2.36 5.97 -2.39 -0.01 2.35 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 2.59 6.79 -2.39 -0.02 2.57 16 36 H -0.02 -0.83 7.18 -2.39 -0.02 -0.85 16 37 H 0.03 1.50 7.45 -2.39 -0.02 1.48 16 38 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 39 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 41 H 0.11 1.96 8.07 -2.39 -0.02 1.94 16 42 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.14 3.09 8.03 -2.91 -0.02 3.07 16 Total: -1.00 -72.56 342.08 -1.86 -74.42 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.93 Total: 10.57 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.49 Total: -5.71 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -10.19 Total: -118.03 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.97 Total: -7.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -72.56 -1.86 -74.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588963770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds