Wall clock time and date at job start Tue Mar 31 2020 07:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40154 * 125.86613 * 2 1 4 4 H 0.97001 * 126.35051 * 0.04272 * 3 2 1 5 5 C 1.37279 * 107.30161 * 180.23859 * 3 2 1 6 6 N 1.33316 * 126.35438 * 179.78376 * 5 3 2 7 7 C 1.32903 * 119.99719 * 359.97438 * 6 5 3 8 8 O 1.21589 * 120.00651 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99657 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47011 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46714 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46714 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47011 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99870 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00341 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99718 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47341 * 90.00054 * 17 15 13 19 19 H 1.48502 * 109.46660 * 209.99981 * 17 15 13 20 20 H 1.48498 * 109.47332 * 329.99477 * 17 15 13 21 21 C 1.40978 * 107.28871 * 359.76921 * 5 3 2 22 22 C 1.35131 * 108.23858 * 359.97438 * 21 5 3 23 23 C 1.50695 * 125.54716 * 179.97438 * 22 21 5 24 24 C 1.53002 * 117.50044 * 325.01494 * 23 22 21 25 25 C 1.53000 * 60.02940 * 107.50594 * 24 23 22 26 26 H 1.09003 * 109.46737 * 270.16902 * 1 2 3 27 27 H 1.09001 * 109.47101 * 30.16425 * 1 2 3 28 28 H 1.09001 * 109.47481 * 150.17001 * 1 2 3 29 29 H 1.09004 * 109.47263 * 300.00375 * 9 7 6 30 30 H 1.09002 * 109.46822 * 59.99659 * 9 7 6 31 31 H 1.08995 * 109.47233 * 299.99725 * 10 9 7 32 32 H 1.09002 * 109.47114 * 60.00475 * 10 9 7 33 33 H 1.08995 * 109.47718 * 300.00176 * 11 10 9 34 34 H 1.09002 * 109.46754 * 60.00485 * 11 10 9 35 35 H 1.09004 * 109.47527 * 299.99993 * 12 11 10 36 36 H 1.09002 * 109.47554 * 60.00401 * 12 11 10 37 37 H 0.96996 * 119.99880 * 179.97438 * 16 15 13 38 38 H 1.08001 * 125.88103 * 179.97438 * 21 5 3 39 39 H 1.08999 * 115.55804 * 179.33331 * 23 22 21 40 40 H 1.09002 * 117.49918 * 0.02562 * 24 23 22 41 41 H 1.09002 * 117.49754 * 215.00777 * 24 23 22 42 42 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 43 43 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2862 1.1358 0.0000 4 1 1.9899 2.0595 0.0006 5 6 3.5875 0.6987 -0.0055 6 7 4.6785 1.4650 -0.0113 7 6 4.5607 2.7888 -0.0128 8 8 3.4580 3.3011 -0.0093 9 6 5.7940 3.6549 -0.0189 10 6 5.3823 5.1284 -0.0201 11 6 6.6344 6.0077 -0.0256 12 6 6.2227 7.4813 -0.0274 13 6 7.4559 8.3474 -0.0334 14 1 8.4354 7.8924 -0.0362 15 6 7.3338 9.7208 -0.0355 16 7 6.1411 10.2749 -0.0327 17 14 8.8625 10.7944 -0.0437 18 1 9.2619 11.0762 -1.4459 19 1 8.5735 12.0724 0.6551 20 1 9.9672 10.0880 0.6532 21 6 3.5562 -0.7107 -0.0034 22 6 2.2637 -1.1049 0.0038 23 6 1.7834 -2.5333 0.0076 24 6 2.6081 -3.5581 -0.7739 25 6 2.6334 -3.5632 0.7559 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3634 -0.8915 -0.5112 29 1 6.3901 3.4445 0.8691 30 1 6.3832 3.4419 -0.9108 31 1 4.7865 5.3385 -0.9083 32 1 4.7929 5.3418 0.8717 33 1 7.2299 5.7976 0.8628 34 1 7.2241 5.7945 -0.9171 35 1 5.6274 7.6912 -0.9161 36 1 5.6327 7.6949 0.8639 37 1 6.0553 11.2411 -0.0338 38 1 4.4169 -1.3630 -0.0069 39 1 0.7016 -2.6657 0.0249 40 1 3.4983 -3.1991 -1.2905 41 1 2.0688 -4.3644 -1.2710 42 1 2.1104 -4.3727 1.2652 43 1 3.5402 -3.2080 1.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589542048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:14 Heat of formation + Delta-G solvation = 70.990964 kcal Electronic energy + Delta-G solvation = -21891.487647 eV Core-core repulsion = 18553.702836 eV Total energy + Delta-G solvation = -3337.784810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93052 -39.17050 -37.71501 -34.97885 -34.34887 -32.47076 -31.86671 -31.45195 -29.51781 -26.93282 -25.36777 -24.57032 -23.00375 -22.85173 -21.34304 -20.35317 -19.75700 -19.39179 -17.61143 -16.82938 -16.26027 -16.13460 -15.91708 -15.22618 -15.09576 -14.92386 -14.49087 -14.25630 -13.95948 -13.68844 -13.25835 -13.13233 -12.51370 -12.39331 -12.19339 -12.00670 -11.72215 -11.56106 -11.37870 -11.21605 -10.86784 -10.52603 -10.48675 -10.31419 -10.29541 -10.10432 -9.65301 -9.43390 -9.18878 -8.96230 -8.80982 -8.21202 -7.76582 -5.86352 -3.88013 0.76588 1.14751 2.04476 3.25576 3.37748 3.40689 3.45933 3.50354 3.62124 3.86427 4.07219 4.17302 4.26030 4.29265 4.48362 4.55043 4.59675 4.76041 4.91245 5.04938 5.17836 5.27550 5.41639 5.48654 5.50585 5.57802 5.75511 5.79473 5.93933 6.19053 6.42317 6.48838 6.51298 6.62279 6.78509 7.06168 7.20730 7.32017 7.38978 7.74686 7.85446 8.03353 8.16694 8.59304 8.84683 9.19931 9.74924 11.25111 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.045802 B = 0.002114 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.176041 B =13239.110400 C =13745.748479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.390 5.390 3 N -0.483 5.483 4 H 0.455 0.545 5 C 0.478 3.522 6 N -0.648 5.648 7 C 0.487 3.513 8 O -0.597 6.597 9 C -0.115 4.115 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.053 3.947 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.269 4.269 22 C 0.211 3.789 23 C -0.120 4.120 24 C -0.153 4.153 25 C -0.153 4.153 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.169 0.831 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 -34.178 0.020 37.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.180 5.180 3 N -0.222 5.222 4 H 0.313 0.687 5 C 0.228 3.772 6 N -0.409 5.409 7 C 0.277 3.723 8 O -0.480 6.480 9 C -0.155 4.155 10 C -0.142 4.142 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.147 4.147 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.299 4.299 22 C 0.090 3.910 23 C -0.140 4.140 24 C -0.191 4.191 25 C -0.190 4.190 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.186 0.814 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.085 -33.507 0.023 36.746 hybrid contribution -0.090 1.635 -0.003 1.638 sum -15.174 -31.872 0.020 35.300 Atomic orbital electron populations 1.22120 0.73305 1.05292 1.03930 1.46519 1.03997 0.98308 1.69145 1.47550 1.02430 1.02411 1.69817 0.68667 1.20883 0.78592 0.94420 0.83335 1.70066 1.21423 1.07264 1.42135 1.21774 0.90696 0.86553 0.73304 1.90327 1.29166 1.78493 1.49989 1.21368 0.95236 0.95002 1.03882 1.21447 0.98981 0.91541 1.02210 1.21643 0.95391 0.97671 1.00096 1.19103 0.96490 0.89009 0.97136 1.21327 0.93098 0.91186 1.49871 0.92698 1.25055 0.95807 0.98259 0.95611 1.69984 1.21964 1.10427 1.51332 0.86601 0.83505 0.79928 0.77998 1.20753 1.21331 1.19893 1.20441 0.96051 0.91985 1.21450 1.20035 0.89806 0.86998 0.94160 1.20585 0.98960 0.84499 1.09974 1.23177 1.01914 0.99253 0.94751 1.23182 1.01656 0.99163 0.95023 0.90451 0.89294 0.88298 0.89342 0.89349 0.92376 0.92379 0.93488 0.93500 0.96720 0.96705 0.93172 0.81357 0.86069 0.87297 0.87561 0.87554 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.20 59.85 0.67 0.98 16 2 N -0.39 -3.07 4.05 -63.59 -0.26 -3.33 16 3 N -0.48 -5.93 6.91 31.32 0.22 -5.71 16 4 H 0.45 6.19 6.36 -182.56 -1.16 5.03 16 5 C 0.48 6.68 7.72 -155.18 -1.20 5.48 16 6 N -0.65 -11.01 10.51 -11.59 -0.12 -11.13 16 7 C 0.49 9.21 7.71 -11.81 -0.09 9.12 16 8 O -0.60 -12.08 13.33 5.29 0.07 -12.01 16 9 C -0.12 -2.12 5.78 -27.88 -0.16 -2.28 16 10 C -0.10 -2.20 4.50 -26.73 -0.12 -2.32 16 11 C -0.11 -2.58 5.15 -26.73 -0.14 -2.71 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.73 9.11 -34.44 -0.31 -16.04 16 14 H 0.05 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -28.64 13.29 55.43 0.74 -27.90 16 17 Si 0.89 22.83 29.54 -169.99 -5.02 17.81 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.27 -2.62 9.72 -39.65 -0.39 -3.01 16 22 C 0.21 1.50 6.63 -81.70 -0.54 0.96 16 23 C -0.12 -0.41 5.96 -91.74 -0.55 -0.95 16 24 C -0.15 -0.39 10.04 -26.73 -0.27 -0.66 16 25 C -0.15 -0.39 10.04 -26.70 -0.27 -0.66 16 26 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 0.06 7.20 -51.93 -0.37 -0.32 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.01 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 38 H 0.17 1.34 8.04 -52.49 -0.42 0.92 16 39 H 0.12 0.16 7.21 -51.93 -0.37 -0.21 16 40 H 0.11 0.35 7.93 -51.93 -0.41 -0.06 16 41 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.11 0.13 8.14 -51.92 -0.42 -0.30 16 43 H 0.11 0.35 7.89 -51.93 -0.41 -0.06 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -38.51 361.24 -10.29 -48.81 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.76 Total: -1.82 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.60 Total: -10.14 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.57 Total: -48.08 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.51 -10.29 -48.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589542048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.798 kcal (2) G-P(sol) polarization free energy of solvation -38.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds