Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40154 * 125.86613 * 2 1 4 4 H 0.97001 * 126.35051 * 0.04272 * 3 2 1 5 5 C 1.37279 * 107.30161 * 180.23859 * 3 2 1 6 6 N 1.33316 * 126.35438 * 179.78376 * 5 3 2 7 7 C 1.32903 * 119.99719 * 359.97438 * 6 5 3 8 8 O 1.21589 * 120.00651 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99657 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47011 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46714 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46714 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47011 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99870 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00341 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99718 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47341 * 90.00054 * 17 15 13 19 19 H 1.48502 * 109.46660 * 209.99981 * 17 15 13 20 20 H 1.48498 * 109.47332 * 329.99477 * 17 15 13 21 21 C 1.40978 * 107.28871 * 359.76921 * 5 3 2 22 22 C 1.35131 * 108.23858 * 359.97438 * 21 5 3 23 23 C 1.50695 * 125.54716 * 179.97438 * 22 21 5 24 24 C 1.53002 * 117.50044 * 325.01494 * 23 22 21 25 25 C 1.53000 * 60.02940 * 107.50594 * 24 23 22 26 26 H 1.09003 * 109.46737 * 270.16902 * 1 2 3 27 27 H 1.09001 * 109.47101 * 30.16425 * 1 2 3 28 28 H 1.09001 * 109.47481 * 150.17001 * 1 2 3 29 29 H 1.09004 * 109.47263 * 300.00375 * 9 7 6 30 30 H 1.09002 * 109.46822 * 59.99659 * 9 7 6 31 31 H 1.08995 * 109.47233 * 299.99725 * 10 9 7 32 32 H 1.09002 * 109.47114 * 60.00475 * 10 9 7 33 33 H 1.08995 * 109.47718 * 300.00176 * 11 10 9 34 34 H 1.09002 * 109.46754 * 60.00485 * 11 10 9 35 35 H 1.09004 * 109.47527 * 299.99993 * 12 11 10 36 36 H 1.09002 * 109.47554 * 60.00401 * 12 11 10 37 37 H 0.96996 * 119.99880 * 179.97438 * 16 15 13 38 38 H 1.08001 * 125.88103 * 179.97438 * 21 5 3 39 39 H 1.08999 * 115.55804 * 179.33331 * 23 22 21 40 40 H 1.09002 * 117.49918 * 0.02562 * 24 23 22 41 41 H 1.09002 * 117.49754 * 215.00777 * 24 23 22 42 42 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 43 43 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2862 1.1358 0.0000 4 1 1.9899 2.0595 0.0006 5 6 3.5875 0.6987 -0.0055 6 7 4.6785 1.4650 -0.0113 7 6 4.5607 2.7888 -0.0128 8 8 3.4580 3.3011 -0.0093 9 6 5.7940 3.6549 -0.0189 10 6 5.3823 5.1284 -0.0201 11 6 6.6344 6.0077 -0.0256 12 6 6.2227 7.4813 -0.0274 13 6 7.4559 8.3474 -0.0334 14 1 8.4354 7.8924 -0.0362 15 6 7.3338 9.7208 -0.0355 16 7 6.1411 10.2749 -0.0327 17 14 8.8625 10.7944 -0.0437 18 1 9.2619 11.0762 -1.4459 19 1 8.5735 12.0724 0.6551 20 1 9.9672 10.0880 0.6532 21 6 3.5562 -0.7107 -0.0034 22 6 2.2637 -1.1049 0.0038 23 6 1.7834 -2.5333 0.0076 24 6 2.6081 -3.5581 -0.7739 25 6 2.6334 -3.5632 0.7559 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3634 -0.8915 -0.5112 29 1 6.3901 3.4445 0.8691 30 1 6.3832 3.4419 -0.9108 31 1 4.7865 5.3385 -0.9083 32 1 4.7929 5.3418 0.8717 33 1 7.2299 5.7976 0.8628 34 1 7.2241 5.7945 -0.9171 35 1 5.6274 7.6912 -0.9161 36 1 5.6327 7.6949 0.8639 37 1 6.0553 11.2411 -0.0338 38 1 4.4169 -1.3630 -0.0069 39 1 0.7016 -2.6657 0.0249 40 1 3.4983 -3.1991 -1.2905 41 1 2.0688 -4.3644 -1.2710 42 1 2.1104 -4.3727 1.2652 43 1 3.5402 -3.2080 1.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589542048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = 45.213799 kcal Electronic energy + Delta-G solvation = -21892.605428 eV Core-core repulsion = 18553.702836 eV Total energy + Delta-G solvation = -3338.902592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.75464 -40.39055 -38.09308 -36.73060 -35.48866 -34.58767 -32.77726 -32.27617 -31.37408 -28.04755 -26.94194 -25.05638 -24.50953 -23.15943 -22.66031 -21.69895 -21.18039 -20.25032 -18.57749 -18.42757 -17.40991 -17.10032 -16.93313 -16.63773 -16.57179 -16.08441 -15.44458 -15.36603 -15.04378 -14.57017 -14.39040 -14.13381 -13.70256 -13.61287 -13.53721 -13.24203 -12.83174 -12.82474 -12.40101 -12.34205 -12.23300 -12.23115 -12.12797 -11.57744 -11.43589 -11.38515 -11.33720 -11.32500 -11.02780 -10.56899 -10.31444 -10.25358 -8.73309 -8.20262 -6.32752 -0.08264 0.42168 1.11885 1.38503 1.41856 1.53218 2.40834 2.62165 2.62457 2.98878 3.04193 3.11642 3.35118 3.77608 3.91433 4.03016 4.09485 4.13478 4.13701 4.26869 4.35052 4.40860 4.55616 4.58759 4.69154 4.76111 4.85309 4.89857 4.92957 5.02860 5.07815 5.17945 5.22929 5.27748 5.32780 5.35874 5.52496 5.57703 5.74247 5.79550 5.84414 6.23784 6.29308 6.58435 6.84268 7.36341 7.61161 8.92214 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.045802 B = 0.002114 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.176041 B =13239.110400 C =13745.748479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.375 5.375 3 N -0.495 5.495 4 H 0.448 0.552 5 C 0.446 3.554 6 N -0.674 5.674 7 C 0.474 3.526 8 O -0.634 6.634 9 C -0.107 4.107 10 C -0.090 4.090 11 C -0.096 4.096 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.064 0.936 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.260 1.260 21 C -0.289 4.289 22 C 0.236 3.764 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.149 4.149 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.139 0.861 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.057 0.943 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.264 0.736 38 H 0.181 0.819 39 H 0.153 0.847 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.101 -37.156 -0.004 40.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.163 5.163 3 N -0.229 5.229 4 H 0.304 0.696 5 C 0.199 3.801 6 N -0.437 5.437 7 C 0.263 3.737 8 O -0.520 6.520 9 C -0.146 4.146 10 C -0.128 4.128 11 C -0.134 4.134 12 C -0.016 4.016 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.184 1.184 21 C -0.319 4.319 22 C 0.112 3.888 23 C -0.146 4.146 24 C -0.186 4.186 25 C -0.186 4.186 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.157 0.843 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.072 0.928 38 H 0.199 0.801 39 H 0.171 0.829 40 H 0.117 0.883 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.486 -36.543 -0.002 39.689 hybrid contribution -0.253 2.342 0.009 2.356 sum -15.740 -34.201 0.007 37.649 Atomic orbital electron populations 1.22675 0.70197 1.07361 1.05772 1.47167 1.05453 0.96990 1.66685 1.47549 1.03206 1.03532 1.68617 0.69585 1.21267 0.78766 0.95765 0.84273 1.69954 1.23341 1.06138 1.44288 1.21836 0.90242 0.87591 0.74031 1.90301 1.29922 1.78998 1.52765 1.21233 0.95724 0.92647 1.05034 1.21220 0.97456 0.93553 1.00558 1.21462 0.96394 0.94463 1.01067 1.19036 0.95601 0.92605 0.94311 1.21738 0.93782 0.92138 1.50458 0.91729 1.26140 0.99761 0.99975 0.94652 1.70138 1.24761 1.11103 1.51789 0.85317 0.78772 0.77549 0.78599 1.19569 1.20603 1.18444 1.20624 0.97965 0.90150 1.23121 1.20707 0.88850 0.88491 0.90716 1.20872 1.00783 0.81678 1.11256 1.23277 1.01450 0.98967 0.94867 1.23284 1.01172 0.98909 0.95239 0.88690 0.89130 0.84329 0.88147 0.88144 0.94048 0.94063 0.92389 0.92378 0.99638 0.99627 0.92777 0.80139 0.82939 0.88304 0.85449 0.85490 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.20 127.77 1.43 1.70 16 2 N -0.37 -5.24 4.05 -355.11 -1.44 -6.67 16 3 N -0.50 -12.43 6.91 -54.81 -0.38 -12.80 16 4 H 0.45 12.94 6.36 -213.28 -1.36 11.58 16 5 C 0.45 12.88 7.72 133.82 1.03 13.91 16 6 N -0.67 -24.01 10.51 -309.88 -3.26 -27.26 16 7 C 0.47 18.94 7.71 87.95 0.68 19.61 16 8 O -0.63 -27.46 13.33 -4.00 -0.05 -27.52 16 9 C -0.11 -4.07 5.78 29.85 0.17 -3.89 16 10 C -0.09 -4.00 4.50 30.59 0.14 -3.86 16 11 C -0.10 -4.62 5.15 30.59 0.16 -4.46 16 12 C 0.02 1.29 4.97 29.85 0.15 1.44 16 13 C -0.54 -33.66 9.11 25.60 0.23 -33.43 16 14 H 0.06 3.79 7.74 -2.91 -0.02 3.76 16 15 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 16 N -0.94 -61.28 13.29 21.45 0.28 -60.99 16 17 Si 0.97 47.00 29.54 68.60 2.03 49.03 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.29 -5.49 9.72 22.23 0.22 -5.28 16 22 C 0.24 2.85 6.63 41.14 0.27 3.12 16 23 C -0.13 -0.36 5.96 -11.52 -0.07 -0.43 16 24 C -0.15 -0.23 10.04 30.60 0.31 0.07 16 25 C -0.15 -0.25 10.04 30.62 0.31 0.06 16 26 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.14 -0.53 7.20 -2.39 -0.02 -0.55 16 29 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 31 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 35 H -0.01 -0.96 8.14 -2.39 -0.02 -0.97 16 36 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.18 2.80 8.04 -2.91 -0.02 2.78 16 39 H 0.15 -0.46 7.21 -2.39 -0.02 -0.48 16 40 H 0.10 0.41 7.93 -2.39 -0.02 0.39 16 41 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.13 -0.25 8.14 -2.38 -0.02 -0.27 16 43 H 0.10 0.42 7.89 -2.39 -0.02 0.40 16 Total: -1.00 -88.31 361.24 2.32 -86.00 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -0.36 Total: 11.70 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.49 Total: -11.47 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.79 Total: -107.73 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -88.31 2.32 -86.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589542048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.209 kcal (2) G-P(sol) polarization free energy of solvation -88.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds