Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99801 * 2 1 4 4 O 1.21282 * 119.99940 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00035 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47184 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 3 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47123 * 90.00333 * 11 9 7 13 13 H 1.48506 * 109.46940 * 210.00455 * 11 9 7 14 14 H 1.48493 * 109.47121 * 329.99876 * 11 9 7 15 15 C 1.46496 * 120.00352 * 180.02562 * 2 1 3 16 16 H 1.08995 * 109.68234 * 179.48024 * 15 2 1 17 17 C 1.53361 * 109.68201 * 299.99914 * 15 2 1 18 18 C 1.53110 * 109.51633 * 169.67188 * 17 15 2 19 19 C 1.53365 * 109.51066 * 289.73645 * 18 17 15 20 20 C 1.50832 * 108.38225 * 49.93694 * 19 18 17 21 21 C 1.35745 * 124.12242 * 343.42275 * 20 19 18 22 22 C 1.39291 * 107.99121 * 179.89927 * 21 20 19 23 23 N 1.31072 * 108.07916 * 0.05733 * 22 21 20 24 24 N 1.34322 * 128.03069 * 163.41961 * 20 19 18 25 25 C 1.46494 * 126.09635 * 0.10393 * 24 20 19 26 26 H 1.08996 * 109.47300 * 89.99776 * 1 2 3 27 27 H 1.09010 * 109.46976 * 209.99920 * 1 2 3 28 28 H 1.09007 * 109.47283 * 329.99472 * 1 2 3 29 29 H 1.09001 * 109.47612 * 59.99945 * 5 3 2 30 30 H 1.09001 * 109.47122 * 299.99777 * 5 3 2 31 31 H 1.09001 * 109.47002 * 299.99404 * 6 5 3 32 32 H 1.08993 * 109.46955 * 59.99842 * 6 5 3 33 33 H 0.97004 * 119.99097 * 179.97438 * 10 9 7 34 34 H 1.08998 * 109.46607 * 289.68678 * 17 15 2 35 35 H 1.09002 * 109.46504 * 49.66098 * 17 15 2 36 36 H 1.09010 * 109.45997 * 49.74393 * 18 17 15 37 37 H 1.08995 * 109.46962 * 169.72882 * 18 17 15 38 38 H 1.08998 * 109.68293 * 169.65708 * 19 18 17 39 39 H 1.08998 * 109.67856 * 290.18204 * 19 18 17 40 40 H 1.08003 * 125.96490 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.47216 * 89.99941 * 25 24 20 42 42 H 1.08999 * 109.47836 * 210.00273 * 25 24 20 43 43 H 1.09001 * 109.47484 * 329.99817 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 6 1.6260 4.9404 0.0023 8 1 0.5459 4.9403 0.0023 9 6 2.3153 6.1344 0.0024 10 7 1.6576 7.2734 0.0030 11 14 4.1833 6.1344 0.0018 12 1 4.6778 6.1349 -1.3984 13 1 4.6785 7.3468 0.7022 14 1 4.6785 4.9218 0.7013 15 6 2.1975 -1.2686 -0.0006 16 1 3.2698 -1.0734 -0.0098 17 6 1.8306 -2.0775 1.2496 18 6 2.3897 -3.4972 1.1226 19 6 1.6094 -4.2605 0.0452 20 6 1.5535 -3.4063 -1.1966 21 6 1.8166 -2.0747 -1.2173 22 6 1.6689 -1.6274 -2.5282 23 7 1.3278 -2.6516 -3.2715 24 7 1.2487 -3.7852 -2.4487 25 6 0.8963 -5.1406 -2.8785 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 0.7589 2.5299 0.8908 30 1 0.7583 2.5302 -0.8892 31 1 3.0061 3.5772 0.8911 32 1 3.0061 3.5779 -0.8888 33 1 2.1427 8.1134 0.0034 34 1 2.2559 -1.5972 2.1308 35 1 0.7459 -2.1218 1.3482 36 1 3.4423 -3.4494 0.8434 37 1 2.2902 -4.0136 2.0773 38 1 2.1150 -5.2000 -0.1779 39 1 0.5982 -4.4626 0.3983 40 1 1.8103 -0.6133 -2.8720 41 1 -0.1827 -5.2763 -2.8044 42 1 1.2108 -5.2875 -3.9118 43 1 1.3986 -5.8667 -2.2393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589785006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = 10.524495 kcal Electronic energy + Delta-G solvation = -23582.102798 eV Core-core repulsion = 20241.695964 eV Total energy + Delta-G solvation = -3340.406833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.63939 -40.80644 -37.92817 -35.84937 -35.55701 -34.33350 -33.26417 -30.67501 -30.40448 -28.06588 -27.51477 -27.45864 -24.47571 -23.01774 -22.72757 -21.71920 -20.08680 -19.57169 -19.08233 -17.93895 -17.74781 -16.86205 -16.65661 -16.31374 -16.22059 -15.54779 -15.14999 -14.98340 -14.79734 -14.49838 -14.35604 -14.23661 -13.88324 -13.81049 -13.63836 -13.42451 -13.26765 -13.07549 -12.89969 -12.75787 -12.18457 -11.99654 -11.94933 -11.83449 -11.75791 -11.61631 -11.53108 -11.38205 -10.77422 -10.68424 -10.22932 -9.67046 -9.23315 -8.31030 -6.33548 0.84617 1.33484 1.34933 1.50716 1.57292 1.61990 1.71689 2.24001 2.35644 3.04704 3.57124 3.58791 3.72972 3.95024 4.02949 4.12058 4.22929 4.34349 4.37953 4.39661 4.41309 4.46260 4.54542 4.63009 4.66124 4.70302 4.72864 4.84711 4.88192 4.99090 5.05053 5.17355 5.21089 5.25233 5.34783 5.38317 5.45566 5.57619 5.61511 5.72221 6.13977 6.24378 6.44788 6.67320 6.72510 7.27371 7.31767 8.84710 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.003491 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.466030 B = 8018.035552 C = 8280.764441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.603 5.603 3 C 0.513 3.487 4 O -0.587 6.587 5 C -0.113 4.113 6 C 0.007 3.993 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.937 3.063 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.261 1.261 15 C 0.217 3.783 16 H 0.071 0.929 17 C -0.124 4.124 18 C -0.106 4.106 19 C -0.050 4.050 20 C 0.105 3.895 21 C -0.267 4.267 22 C 0.052 3.948 23 N -0.336 5.336 24 N -0.368 5.368 25 C 0.090 3.910 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.010 0.990 32 H 0.005 0.995 33 H 0.267 0.733 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -32.383 1.368 32.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.335 5.335 3 C 0.303 3.697 4 O -0.467 6.467 5 C -0.152 4.152 6 C -0.031 4.031 7 C -0.565 4.565 8 H 0.069 0.931 9 C -0.183 4.183 10 N -0.584 5.584 11 Si 0.762 3.238 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.186 1.186 15 C 0.113 3.887 16 H 0.089 0.911 17 C -0.162 4.162 18 C -0.144 4.144 19 C -0.088 4.088 20 C -0.026 4.026 21 C -0.279 4.279 22 C -0.132 4.132 23 N -0.158 5.158 24 N -0.149 5.149 25 C -0.050 4.050 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.180 0.820 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.800 -32.757 0.101 32.977 hybrid contribution 0.973 1.364 0.179 1.685 sum -2.826 -31.393 0.280 31.521 Atomic orbital electron populations 1.21893 0.77775 1.04372 1.02250 1.47950 1.08048 1.04714 1.72762 1.21229 0.87625 0.86482 0.74359 1.90615 1.16177 1.88005 1.51899 1.21500 0.99125 0.90046 1.04541 1.19216 0.94976 0.92718 0.96237 1.21423 0.94323 0.90578 1.50204 0.93136 1.25788 1.03037 0.95240 0.94284 1.70028 1.37671 0.98130 1.52601 0.85843 0.80881 0.77999 0.79088 1.19551 1.20182 1.18564 1.19315 0.95799 0.81497 0.92127 0.91126 1.21954 1.02676 0.95913 0.95647 1.21527 0.99403 0.93772 0.99732 1.20573 1.03537 0.96960 0.87775 1.21440 0.97962 0.94832 0.88404 1.20114 1.18182 0.94416 0.95237 1.23459 0.98858 0.98140 0.92700 1.77494 1.26689 0.92973 1.18690 1.48604 1.52265 1.08980 1.05071 1.22242 1.03067 0.76269 1.03408 0.92933 0.88937 0.90016 0.87934 0.88594 0.97125 0.97614 0.92378 0.91568 0.89718 0.92155 0.87561 0.87527 0.87193 0.81958 0.89132 0.89371 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 9.58 127.77 1.22 2.90 16 2 N -0.60 -17.15 2.65 -825.87 -2.19 -19.34 16 3 C 0.51 19.51 7.67 87.66 0.67 20.19 16 4 O -0.59 -27.22 15.32 -3.04 -0.05 -27.27 16 5 C -0.11 -4.49 4.19 29.85 0.13 -4.36 16 6 C 0.01 0.33 3.33 29.85 0.10 0.43 16 7 C -0.53 -31.11 9.66 25.60 0.25 -30.86 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C 0.01 0.85 5.47 84.65 0.46 1.32 16 10 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 11 Si 0.94 47.83 27.47 68.60 1.88 49.72 16 12 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.26 -13.28 6.54 99.48 0.65 -12.63 16 15 C 0.22 5.55 2.88 44.41 0.13 5.68 16 16 H 0.07 2.29 6.92 -2.39 -0.02 2.27 16 17 C -0.12 -2.09 5.34 30.75 0.16 -1.93 16 18 C -0.11 -1.14 5.90 30.75 0.18 -0.96 16 19 C -0.05 -0.42 5.90 30.01 0.18 -0.25 16 20 C 0.10 1.89 6.73 41.64 0.28 2.17 16 21 C -0.27 -6.54 5.04 -20.14 -0.10 -6.64 16 22 C 0.05 1.50 11.84 85.06 1.01 2.51 16 23 N -0.34 -9.29 12.59 -57.28 -0.72 -10.01 16 24 N -0.37 -7.12 4.00 -356.02 -1.42 -8.54 16 25 C 0.09 0.78 11.32 127.77 1.45 2.23 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.47 6.29 -2.38 -0.01 1.45 16 28 H 0.08 1.68 6.44 -2.38 -0.02 1.66 16 29 H 0.10 3.70 7.40 -2.39 -0.02 3.68 16 30 H 0.10 3.58 8.11 -2.39 -0.02 3.56 16 31 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 32 H 0.01 0.29 7.53 -2.39 -0.02 0.28 16 33 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.18 6.31 -2.39 -0.02 1.17 16 36 H 0.06 0.81 8.11 -2.38 -0.02 0.79 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.40 7.76 -2.39 -0.02 0.38 16 39 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.16 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.12 0.25 7.57 -2.39 -0.02 0.23 16 Total: -1.00 -81.81 344.41 4.86 -76.95 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.94 Total: 5.73 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.12 Total: -7.57 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.04 Total: -97.56 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.27 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.88 Total: 49.72 kcal Total: -81.81 4.86 -76.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589785006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.476 kcal (2) G-P(sol) polarization free energy of solvation -81.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds