Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47463 * 2 1 4 4 C 1.34265 * 125.75840 * 125.26179 * 3 2 1 5 5 C 1.38043 * 107.41920 * 180.14404 * 4 3 2 6 6 C 1.47423 * 126.41599 * 179.87282 * 5 4 3 7 7 O 1.21602 * 119.99787 * 328.09384 * 6 5 4 8 8 N 1.34773 * 120.00294 * 148.10025 * 6 5 4 9 9 C 1.46925 * 120.63399 * 173.92437 * 8 6 5 10 10 C 1.53188 * 108.89674 * 126.29763 * 9 8 6 11 11 C 1.53353 * 109.14920 * 54.57808 * 10 9 8 12 12 C 1.53003 * 109.41915 * 178.67868 * 11 10 9 13 13 C 1.50701 * 109.46746 * 295.12417 * 12 11 10 14 14 H 1.08000 * 120.00304 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99870 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46956 * 60.00032 * 17 15 13 19 19 H 1.48499 * 109.47420 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47011 * 300.00569 * 17 15 13 21 21 C 1.53048 * 109.60541 * 298.71473 * 11 10 9 22 22 C 1.46929 * 120.62896 * 353.90083 * 8 6 5 23 23 C 1.41296 * 107.16686 * 359.60942 * 5 4 3 24 24 N 1.30442 * 108.02642 * 0.24324 * 23 5 4 25 25 H 1.09002 * 109.46279 * 60.00247 * 1 2 3 26 26 H 1.08996 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46929 * 300.00552 * 1 2 3 28 28 H 1.09004 * 109.47518 * 239.99600 * 2 1 3 29 29 H 1.09003 * 109.47014 * 119.99869 * 2 1 3 30 30 H 1.07997 * 126.29102 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.58545 * 246.15869 * 9 8 6 32 32 H 1.08998 * 109.58482 * 6.43526 * 9 8 6 33 33 H 1.08994 * 109.50175 * 174.66036 * 10 9 8 34 34 H 1.08999 * 109.49621 * 294.75800 * 10 9 8 35 35 H 1.09002 * 109.42287 * 58.75281 * 11 10 9 36 36 H 1.08999 * 109.46963 * 55.12724 * 12 11 10 37 37 H 1.08997 * 109.47174 * 175.12553 * 12 11 10 38 38 H 0.97002 * 119.99354 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49510 * 301.41996 * 21 11 10 40 40 H 1.08999 * 109.52212 * 181.34465 * 21 11 10 41 41 H 1.09004 * 109.58851 * 353.41804 * 22 8 6 42 42 H 1.08996 * 109.58631 * 113.70350 * 22 8 6 43 43 H 1.08004 * 125.98281 * 180.20354 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8730 1.9111 0.8896 5 6 3.0709 3.2310 0.5369 6 6 3.9324 4.2034 1.2338 7 8 4.0846 4.1274 2.4378 8 7 4.5511 5.1767 0.5364 9 6 5.3044 6.2309 1.2292 10 6 6.7223 6.2884 0.6522 11 6 6.6396 6.4668 -0.8686 12 6 8.0529 6.5581 -1.4476 13 6 8.7271 7.8037 -0.9328 14 1 8.2005 8.4639 -0.2597 15 6 10.0168 8.0999 -1.3204 16 7 10.6583 7.2956 -2.1398 17 14 10.8528 9.6434 -0.6818 18 1 10.9272 9.5888 0.8004 19 1 12.2245 9.7321 -1.2438 20 1 10.0711 10.8366 -1.0945 21 6 5.9115 5.2712 -1.4871 22 6 4.4857 5.2034 -0.9312 23 6 2.2979 3.4737 -0.6207 24 7 1.6773 2.3690 -0.9306 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3209 1.3997 1.7288 31 1 4.8102 7.1909 1.0806 32 1 5.3523 6.0057 2.2946 33 1 7.2602 7.1283 1.0918 34 1 7.2461 5.3604 0.8813 35 1 6.0938 7.3822 -1.0970 36 1 8.6269 5.6825 -1.1446 37 1 7.9980 6.5979 -2.5355 38 1 11.5654 7.5042 -2.4127 39 1 6.4432 4.3528 -1.2381 40 1 5.8745 5.3878 -2.5703 41 1 3.9955 4.2989 -1.2916 42 1 3.9226 6.0783 -1.2559 43 1 2.2320 4.4100 -1.1549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592820061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = 29.985898 kcal Electronic energy + Delta-G solvation = -23137.521114 eV Core-core repulsion = 19797.958191 eV Total energy + Delta-G solvation = -3339.562923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60448 -39.50600 -37.13805 -34.90595 -33.90018 -32.08451 -31.01349 -30.76642 -29.58285 -27.91179 -24.82181 -24.48125 -23.03758 -22.47570 -21.27292 -20.84387 -19.76445 -18.78352 -17.45740 -16.34730 -16.24113 -15.74934 -15.71340 -14.96411 -14.59443 -14.50569 -14.27150 -13.78095 -13.47263 -13.30892 -13.07078 -12.84533 -12.70225 -12.64470 -12.50201 -12.08596 -11.88840 -11.71926 -11.16532 -11.08944 -10.97034 -10.71006 -10.64971 -10.38893 -10.14422 -9.74807 -9.66729 -9.57465 -9.19916 -8.94965 -8.79439 -8.32599 -8.22342 -5.97532 -3.99193 1.45990 2.09269 2.12003 3.17343 3.34702 3.39347 3.41564 3.48356 4.09474 4.47728 4.48920 4.55732 4.63990 4.75377 4.91416 5.12028 5.17808 5.24028 5.37290 5.38245 5.41909 5.46572 5.58062 5.66279 5.67544 5.76908 5.89559 6.04438 6.14476 6.23700 6.41554 6.46174 6.59641 6.61858 6.75192 7.04494 7.07295 7.16117 7.36258 7.67918 7.69805 7.84598 8.02404 8.42346 8.45241 9.07146 9.64460 11.13748 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.002991 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.996682 B = 9359.440963 C = 9714.354499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.363 5.363 4 C 0.118 3.882 5 C -0.284 4.284 6 C 0.593 3.407 7 O -0.556 6.556 8 N -0.599 5.599 9 C 0.110 3.890 10 C -0.117 4.117 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.129 4.129 22 C 0.098 3.902 23 C 0.078 3.922 24 N -0.297 5.297 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.185 0.815 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.324 -13.300 3.175 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.143 5.143 4 C -0.032 4.032 5 C -0.299 4.299 6 C 0.381 3.619 7 O -0.436 6.436 8 N -0.331 5.331 9 C -0.011 4.011 10 C -0.155 4.155 11 C -0.099 4.099 12 C -0.009 4.009 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.167 4.167 22 C -0.025 4.025 23 C -0.109 4.109 24 N -0.117 5.117 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.202 0.798 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.939 -14.079 2.891 24.579 hybrid contribution 1.254 1.239 0.729 1.907 sum -18.685 -12.840 3.620 22.959 Atomic orbital electron populations 1.22056 0.93476 1.03021 1.03779 1.21803 0.96362 0.77016 1.04223 1.48592 1.34417 1.10564 1.20745 1.22911 0.92057 0.93727 0.94512 1.20279 1.11012 0.95522 1.03055 1.17282 0.78678 0.79896 0.86003 1.90738 1.64646 1.73840 1.14354 1.47929 1.51036 1.26988 1.07190 1.21769 0.92766 0.89021 0.97591 1.21938 0.93918 1.02816 0.96846 1.21251 0.99334 0.95482 0.93872 1.19116 0.89060 0.96920 0.95800 1.21213 0.98545 1.07660 1.27968 0.92624 1.25022 0.97558 0.96673 0.95240 1.69958 1.12223 1.37201 1.34224 0.86702 0.78577 0.83777 0.79206 1.20257 1.21410 1.20299 1.22018 0.94147 1.00406 1.00174 1.22153 0.98936 1.02093 0.79277 1.24235 0.94353 0.97580 0.94715 1.77128 1.23868 0.97117 1.13546 0.90915 0.90530 0.91972 0.89315 0.88321 0.79836 0.91862 0.89656 0.89828 0.92395 0.92343 0.96694 0.96661 0.93035 0.92095 0.91136 0.89588 0.91526 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.09 37.16 0.37 -0.51 16 2 C 0.13 0.73 7.21 -4.04 -0.03 0.70 16 3 N -0.36 -3.58 3.65 -60.81 -0.22 -3.80 16 4 C 0.12 1.29 11.38 -16.56 -0.19 1.10 16 5 C -0.28 -3.69 5.47 -105.07 -0.57 -4.26 16 6 C 0.59 9.36 7.61 -12.52 -0.10 9.26 16 7 O -0.56 -10.45 16.45 5.28 0.09 -10.37 16 8 N -0.60 -9.09 2.97 -174.04 -0.52 -9.60 16 9 C 0.11 1.77 6.43 -3.71 -0.02 1.74 16 10 C -0.12 -2.17 5.21 -26.45 -0.14 -2.30 16 11 C -0.08 -1.57 2.10 -90.41 -0.19 -1.76 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 13 C -0.52 -14.12 8.39 -34.44 -0.29 -14.41 16 14 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.13 -2.09 5.36 -26.61 -0.14 -2.23 16 22 C 0.10 1.30 5.25 -3.71 -0.02 1.28 16 23 C 0.08 0.90 9.57 -16.98 -0.16 0.74 16 24 N -0.30 -3.47 12.33 30.86 0.38 -3.09 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.33 8.06 -51.93 -0.42 -0.09 16 30 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.42 7.00 -51.93 -0.36 1.05 16 33 H 0.08 1.64 6.93 -51.93 -0.36 1.28 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.01 4.31 -51.93 -0.22 0.79 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.19 1.80 6.65 -52.48 -0.35 1.45 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -33.79 347.60 -7.73 -41.53 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.72 Total: -1.76 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.70 Total: -8.59 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.38 Total: -42.56 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.79 -7.73 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592820061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.512 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds