Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47463 * 2 1 4 4 C 1.34265 * 125.75840 * 125.26179 * 3 2 1 5 5 C 1.38043 * 107.41920 * 180.14404 * 4 3 2 6 6 C 1.47423 * 126.41599 * 179.87282 * 5 4 3 7 7 O 1.21602 * 119.99787 * 328.09384 * 6 5 4 8 8 N 1.34773 * 120.00294 * 148.10025 * 6 5 4 9 9 C 1.46925 * 120.63399 * 173.92437 * 8 6 5 10 10 C 1.53188 * 108.89674 * 126.29763 * 9 8 6 11 11 C 1.53353 * 109.14920 * 54.57808 * 10 9 8 12 12 C 1.53003 * 109.41915 * 178.67868 * 11 10 9 13 13 C 1.50701 * 109.46746 * 295.12417 * 12 11 10 14 14 H 1.08000 * 120.00304 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99870 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46956 * 60.00032 * 17 15 13 19 19 H 1.48499 * 109.47420 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47011 * 300.00569 * 17 15 13 21 21 C 1.53048 * 109.60541 * 298.71473 * 11 10 9 22 22 C 1.46929 * 120.62896 * 353.90083 * 8 6 5 23 23 C 1.41296 * 107.16686 * 359.60942 * 5 4 3 24 24 N 1.30442 * 108.02642 * 0.24324 * 23 5 4 25 25 H 1.09002 * 109.46279 * 60.00247 * 1 2 3 26 26 H 1.08996 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46929 * 300.00552 * 1 2 3 28 28 H 1.09004 * 109.47518 * 239.99600 * 2 1 3 29 29 H 1.09003 * 109.47014 * 119.99869 * 2 1 3 30 30 H 1.07997 * 126.29102 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.58545 * 246.15869 * 9 8 6 32 32 H 1.08998 * 109.58482 * 6.43526 * 9 8 6 33 33 H 1.08994 * 109.50175 * 174.66036 * 10 9 8 34 34 H 1.08999 * 109.49621 * 294.75800 * 10 9 8 35 35 H 1.09002 * 109.42287 * 58.75281 * 11 10 9 36 36 H 1.08999 * 109.46963 * 55.12724 * 12 11 10 37 37 H 1.08997 * 109.47174 * 175.12553 * 12 11 10 38 38 H 0.97002 * 119.99354 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49510 * 301.41996 * 21 11 10 40 40 H 1.08999 * 109.52212 * 181.34465 * 21 11 10 41 41 H 1.09004 * 109.58851 * 353.41804 * 22 8 6 42 42 H 1.08996 * 109.58631 * 113.70350 * 22 8 6 43 43 H 1.08004 * 125.98281 * 180.20354 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8730 1.9111 0.8896 5 6 3.0709 3.2310 0.5369 6 6 3.9324 4.2034 1.2338 7 8 4.0846 4.1274 2.4378 8 7 4.5511 5.1767 0.5364 9 6 5.3044 6.2309 1.2292 10 6 6.7223 6.2884 0.6522 11 6 6.6396 6.4668 -0.8686 12 6 8.0529 6.5581 -1.4476 13 6 8.7271 7.8037 -0.9328 14 1 8.2005 8.4639 -0.2597 15 6 10.0168 8.0999 -1.3204 16 7 10.6583 7.2956 -2.1398 17 14 10.8528 9.6434 -0.6818 18 1 10.9272 9.5888 0.8004 19 1 12.2245 9.7321 -1.2438 20 1 10.0711 10.8366 -1.0945 21 6 5.9115 5.2712 -1.4871 22 6 4.4857 5.2034 -0.9312 23 6 2.2979 3.4737 -0.6207 24 7 1.6773 2.3690 -0.9306 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3209 1.3997 1.7288 31 1 4.8102 7.1909 1.0806 32 1 5.3523 6.0057 2.2946 33 1 7.2602 7.1283 1.0918 34 1 7.2461 5.3604 0.8813 35 1 6.0938 7.3822 -1.0970 36 1 8.6269 5.6825 -1.1446 37 1 7.9980 6.5979 -2.5355 38 1 11.5654 7.5042 -2.4127 39 1 6.4432 4.3528 -1.2381 40 1 5.8745 5.3878 -2.5703 41 1 3.9955 4.2989 -1.2916 42 1 3.9226 6.0783 -1.2559 43 1 2.2320 4.4100 -1.1549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592820061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = 9.170189 kcal Electronic energy + Delta-G solvation = -23138.423751 eV Core-core repulsion = 19797.958191 eV Total energy + Delta-G solvation = -3340.465560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46721 -40.71362 -38.54203 -35.80493 -35.35581 -33.92340 -32.24651 -31.55278 -30.60253 -29.56234 -26.46453 -25.25766 -24.23399 -23.85714 -22.58542 -21.62986 -21.12948 -20.00717 -18.57234 -18.21693 -17.34347 -16.80875 -16.58124 -16.50182 -16.01383 -15.46592 -15.13756 -15.08922 -14.79752 -14.57927 -14.43391 -14.13809 -13.87321 -13.74239 -13.44345 -13.16724 -12.97162 -12.92917 -12.71456 -12.47326 -12.42073 -12.31113 -12.07412 -11.87532 -11.76689 -11.29615 -11.00684 -10.99593 -10.75183 -10.50424 -10.47467 -9.76849 -9.43672 -8.15200 -6.24211 0.59661 1.17612 1.41777 1.42982 1.44117 1.51474 2.03756 2.37846 2.43858 3.18320 3.43060 3.78569 3.86441 3.98072 4.04775 4.09610 4.10955 4.19528 4.27711 4.37217 4.43691 4.46055 4.58812 4.66971 4.74587 4.81355 4.86756 4.90186 4.92631 5.04513 5.13239 5.22686 5.33466 5.36188 5.40514 5.44421 5.58371 5.67591 5.83566 5.91142 5.92442 6.31617 6.49267 6.56137 6.92493 7.23097 7.44184 8.96455 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.002991 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.996682 B = 9359.440963 C = 9714.354499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.357 5.357 4 C 0.126 3.874 5 C -0.313 4.313 6 C 0.592 3.408 7 O -0.594 6.594 8 N -0.602 5.602 9 C 0.119 3.881 10 C -0.109 4.109 11 C -0.073 4.073 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.064 0.936 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.959 3.041 18 H -0.269 1.269 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.124 4.124 22 C 0.106 3.894 23 C 0.080 3.920 24 N -0.315 5.315 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.205 0.795 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.066 0.934 36 H -0.018 1.018 37 H -0.009 1.009 38 H 0.261 0.739 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.147 -13.491 3.410 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.027 4.027 5 C -0.328 4.328 6 C 0.383 3.617 7 O -0.476 6.476 8 N -0.333 5.333 9 C -0.003 4.003 10 C -0.148 4.148 11 C -0.091 4.091 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.578 5.578 17 Si 0.784 3.216 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.162 4.162 22 C -0.016 4.016 23 C -0.107 4.107 24 N -0.135 5.135 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.222 0.778 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.000 1.000 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -21.798 -14.282 3.101 26.244 hybrid contribution 1.812 1.182 0.639 2.257 sum -19.985 -13.099 3.740 24.187 Atomic orbital electron populations 1.22019 0.93130 1.04258 1.02385 1.22243 0.96662 0.75210 1.06246 1.48954 1.33442 1.11477 1.19712 1.23256 0.91409 0.93312 0.94683 1.20171 1.12259 0.95998 1.04336 1.17657 0.78511 0.79893 0.85641 1.90709 1.66158 1.74755 1.16019 1.47994 1.50673 1.26691 1.07947 1.21594 0.91241 0.90399 0.97064 1.21794 0.95584 1.01096 0.96279 1.21100 0.96222 0.97493 0.94297 1.19014 0.92145 0.94835 0.94405 1.21662 0.98943 1.08346 1.27649 0.91776 1.25949 0.98519 1.00055 0.95513 1.70102 1.12600 1.39286 1.35777 0.85596 0.77349 0.79889 0.78805 1.19398 1.21322 1.19026 1.21936 0.95649 0.97925 1.00723 1.22232 0.96973 1.04422 0.77927 1.24487 0.93704 0.98279 0.94187 1.77099 1.24370 0.97602 1.14444 0.92681 0.88004 0.92890 0.88235 0.85413 0.77848 0.89816 0.90404 0.91276 0.94440 0.91520 0.99997 0.99044 0.93053 0.93682 0.90169 0.87572 0.88844 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.09 71.98 0.73 -0.64 16 2 C 0.12 1.02 7.21 86.38 0.62 1.64 16 3 N -0.36 -6.22 3.65 -346.30 -1.26 -7.49 16 4 C 0.13 2.48 11.38 84.27 0.96 3.44 16 5 C -0.31 -7.63 5.47 -20.15 -0.11 -7.74 16 6 C 0.59 18.13 7.61 86.66 0.66 18.79 16 7 O -0.59 -22.18 16.45 -4.04 -0.07 -22.25 16 8 N -0.60 -17.44 2.97 -822.81 -2.45 -19.89 16 9 C 0.12 3.72 6.43 86.36 0.56 4.27 16 10 C -0.11 -4.08 5.21 30.78 0.16 -3.92 16 11 C -0.07 -2.82 2.10 -10.66 -0.02 -2.84 16 12 C 0.03 1.71 4.45 29.85 0.13 1.84 16 13 C -0.53 -29.33 8.39 25.60 0.21 -29.12 16 14 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 17 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.12 -3.92 5.36 30.67 0.16 -3.75 16 22 C 0.11 2.58 5.25 86.36 0.45 3.03 16 23 C 0.08 1.68 9.57 85.65 0.82 2.50 16 24 N -0.31 -6.75 12.33 -56.27 -0.69 -7.44 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.13 0.41 8.06 -2.39 -0.02 0.39 16 30 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 33 H 0.07 2.75 6.93 -2.39 -0.02 2.73 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.11 2.22 4.31 -2.39 -0.01 2.21 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.21 3.33 6.65 -2.91 -0.02 3.31 16 Total: -1.00 -74.88 347.60 4.63 -70.25 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.99 Total: 9.75 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.80 Total: -12.22 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -4.12 Total: -91.90 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.07 Total: -22.25 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.88 4.63 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592820061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.425 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds