Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.46908 * 2 1 4 4 C 1.34952 * 126.03620 * 124.97716 * 3 2 1 5 5 C 1.35318 * 107.74325 * 179.74900 * 4 3 2 6 6 C 1.39867 * 107.92194 * 0.38877 * 5 4 3 7 7 C 1.50700 * 125.89920 * 179.86219 * 6 5 4 8 8 C 1.50699 * 109.47020 * 124.71715 * 7 6 5 9 9 O 1.21297 * 119.99848 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.37106 * 119.99501 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99341 * 137.64872 * 11 10 8 13 13 C 1.38948 * 120.00233 * 317.64986 * 11 10 8 14 14 N 1.31408 * 120.00009 * 340.28405 * 13 11 10 15 15 Si 1.86797 * 119.99898 * 160.28567 * 13 11 10 16 16 H 1.48500 * 109.47494 * 89.99886 * 15 13 11 17 17 H 1.48508 * 109.47207 * 209.99946 * 15 13 11 18 18 H 1.48501 * 109.47244 * 329.99460 * 15 13 11 19 19 C 1.46492 * 120.00405 * 0.02562 * 10 8 7 20 20 C 1.54968 * 110.92327 * 131.62141 * 19 10 8 21 21 C 1.54269 * 104.15757 * 156.29544 * 20 19 10 22 22 C 1.53870 * 106.64331 * 336.45376 * 21 20 19 23 23 C 1.54272 * 106.59806 * 359.96838 * 22 21 20 24 24 N 1.30838 * 108.20107 * 359.60414 * 6 5 4 25 25 H 1.08994 * 109.47654 * 300.00243 * 1 2 3 26 26 H 1.09003 * 109.46984 * 60.00349 * 1 2 3 27 27 H 1.08997 * 109.47588 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47654 * 239.99757 * 2 1 3 29 29 H 1.09003 * 109.46984 * 119.99651 * 2 1 3 30 30 H 1.08002 * 126.12536 * 359.97438 * 4 3 2 31 31 H 1.08005 * 126.03782 * 180.27564 * 5 4 3 32 32 H 1.09001 * 109.46901 * 4.72148 * 7 6 5 33 33 H 1.08994 * 109.47501 * 244.72154 * 7 6 5 34 34 H 0.96997 * 119.99923 * 180.02562 * 14 13 11 35 35 H 1.08999 * 110.67139 * 8.32391 * 19 10 8 36 36 H 1.09001 * 110.47168 * 37.65041 * 20 19 10 37 37 H 1.08988 * 110.53577 * 274.98129 * 20 19 10 38 38 H 1.08994 * 110.03313 * 217.13924 * 21 20 19 39 39 H 1.09004 * 110.02593 * 95.76174 * 21 20 19 40 40 H 1.09003 * 110.03437 * 119.25667 * 22 21 20 41 41 H 1.08999 * 110.03179 * 240.63943 * 22 21 20 42 42 H 1.09003 * 110.48400 * 142.29000 * 23 22 21 43 43 H 1.08996 * 110.48824 * 264.80469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8727 1.9212 0.8942 5 6 3.0757 3.2122 0.5429 6 6 2.3125 3.4724 -0.5999 7 6 2.2361 4.7881 -1.3307 8 6 2.5937 4.5794 -2.7797 9 8 2.8819 3.4712 -3.1797 10 7 2.5934 5.6242 -3.6311 11 6 2.9183 5.4342 -4.9495 12 1 2.3455 5.9243 -5.7227 13 6 3.9845 4.6111 -5.2906 14 7 4.9076 4.3282 -4.3992 15 14 4.1057 3.9067 -7.0164 16 1 4.8729 4.8404 -7.8795 17 1 4.7992 2.5944 -6.9680 18 1 2.7413 3.7252 -7.5739 19 6 2.2459 6.9628 -3.1479 20 6 3.2868 8.0092 -3.6203 21 6 2.5180 9.3463 -3.5903 22 6 1.0238 8.9983 -3.7082 23 6 0.9357 7.4613 -3.8067 24 7 1.6808 2.3746 -0.9282 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3177 1.4130 1.7368 31 1 3.7129 3.9175 1.0557 32 1 2.9349 5.4941 -0.8820 33 1 1.2233 5.1848 -1.2599 34 1 5.6521 3.7539 -4.6375 35 1 2.1587 6.9691 -2.0614 36 1 3.6210 7.7841 -4.6331 37 1 4.1345 8.0411 -2.9360 38 1 2.8231 9.9714 -4.4294 39 1 2.7076 9.8649 -2.6505 40 1 0.4883 9.3472 -2.8252 41 1 0.6036 9.4552 -4.6042 42 1 0.0688 7.0929 -3.2581 43 1 0.8876 7.1479 -4.8495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593071373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = 46.349418 kcal Electronic energy + Delta-G solvation = -23971.025475 eV Core-core repulsion = 20632.172127 eV Total energy + Delta-G solvation = -3338.853348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67075 -38.59782 -36.60939 -34.37652 -33.17337 -31.66860 -30.69969 -29.22467 -28.00757 -27.68114 -26.70913 -24.48705 -22.88504 -20.66046 -20.15958 -19.76087 -19.61938 -18.48457 -16.62892 -16.19503 -15.90883 -15.11044 -14.90111 -14.50341 -14.11527 -14.02296 -13.81806 -13.43708 -13.07028 -12.99298 -12.62074 -12.27688 -12.12582 -11.99177 -11.85274 -11.57051 -11.33484 -11.21491 -10.98693 -10.74929 -10.68109 -10.50850 -10.42276 -10.36671 -10.05821 -9.87545 -9.84995 -9.71071 -8.69981 -8.55047 -8.08954 -7.77957 -6.88664 -5.95671 -3.67144 2.41598 2.93593 3.35551 3.40083 3.48236 3.51065 4.38685 4.52233 4.67615 5.00242 5.02973 5.12205 5.23829 5.28202 5.29751 5.37525 5.41785 5.58151 5.58891 5.77966 5.90830 5.96816 6.06270 6.13004 6.14527 6.16701 6.17931 6.24037 6.26731 6.32383 6.39548 6.47652 6.51735 6.62302 6.65844 6.93809 6.99705 7.18734 7.28074 7.48894 7.77810 8.35349 8.43961 9.24301 9.38721 9.86175 10.51947 11.13214 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.005570 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.871525 B = 5025.595388 C = 6286.982689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.382 5.382 4 C 0.038 3.962 5 C -0.266 4.266 6 C 0.103 3.897 7 C -0.060 4.060 8 C 0.482 3.518 9 O -0.516 6.516 10 N -0.452 5.452 11 C -0.338 4.338 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.830 5.830 15 Si 0.903 3.097 16 H -0.285 1.285 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.130 3.870 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.133 4.133 24 N -0.256 5.256 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 0.803 10.555 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 N -0.165 5.165 4 C -0.107 4.107 5 C -0.296 4.296 6 C -0.065 4.065 7 C -0.102 4.102 8 C 0.268 3.732 9 O -0.392 6.392 10 N -0.174 5.174 11 C -0.465 4.465 12 H 0.093 0.907 13 C -0.137 4.137 14 N -0.463 5.463 15 Si 0.731 3.269 16 H -0.211 1.211 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.025 3.975 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.172 4.172 24 N -0.078 5.078 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.393 -0.635 9.576 11.531 hybrid contribution 0.923 0.013 -0.106 0.929 sum -5.470 -0.623 9.469 10.953 Atomic orbital electron populations 1.22034 0.94207 1.02290 1.03580 1.21526 0.95762 0.78308 1.03129 1.48710 1.36377 1.10090 1.21322 1.22336 0.96842 0.94927 0.96628 1.21320 1.09424 0.96753 1.02103 1.21751 0.95998 0.94533 0.94233 1.20143 1.02478 0.91628 0.95955 1.19564 0.82408 0.85468 0.85810 1.90557 1.47595 1.23788 1.77250 1.43201 1.62820 1.02835 1.08560 1.18720 1.13200 1.33071 0.81547 0.90747 1.25122 0.93851 0.97303 0.97431 1.69873 1.08983 1.32775 1.34710 0.86369 0.78115 0.78597 0.83844 1.21111 1.21299 1.19817 1.22009 0.93305 0.85710 0.96522 1.22542 0.97307 0.92541 1.03576 1.22100 0.95313 0.98138 1.00564 1.22053 0.96474 0.96668 1.00594 1.22684 0.98101 0.94044 1.02380 1.77455 1.23933 0.96083 1.10287 0.92385 0.90884 0.91208 0.90123 0.89340 0.81800 0.84105 0.89131 0.89566 0.93001 0.91156 0.89545 0.92602 0.92573 0.92768 0.92668 0.92601 0.92703 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.10 37.16 0.38 -1.47 16 2 C 0.13 1.68 7.23 -4.05 -0.03 1.65 16 3 N -0.38 -6.58 3.68 -61.37 -0.23 -6.80 16 4 C 0.04 0.58 11.45 -17.22 -0.20 0.39 16 5 C -0.27 -4.70 10.72 -40.01 -0.43 -5.13 16 6 C 0.10 2.15 6.02 -82.41 -0.50 1.66 16 7 C -0.06 -1.23 4.61 -29.04 -0.13 -1.36 16 8 C 0.48 12.61 6.97 -10.99 -0.08 12.53 16 9 O -0.52 -15.86 13.19 5.54 0.07 -15.79 16 10 N -0.45 -11.30 2.57 -105.58 -0.27 -11.57 16 11 C -0.34 -9.31 7.42 -14.93 -0.11 -9.42 16 12 H 0.07 1.99 7.02 -52.49 -0.37 1.62 16 13 C 0.07 2.10 4.33 -17.47 -0.08 2.02 16 14 N -0.83 -25.15 11.67 55.50 0.65 -24.51 16 15 Si 0.90 22.68 29.60 -169.99 -5.03 17.65 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 19 C 0.13 2.57 3.16 -65.90 -0.21 2.36 16 20 C -0.12 -2.27 6.32 -25.03 -0.16 -2.43 16 21 C -0.12 -1.81 6.80 -25.61 -0.17 -1.98 16 22 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 23 C -0.13 -2.32 6.42 -25.07 -0.16 -2.48 16 24 N -0.26 -5.57 11.76 33.67 0.40 -5.18 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.09 1.67 7.62 -51.93 -0.40 1.28 16 33 H 0.09 1.57 7.96 -51.93 -0.41 1.16 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.07 1.25 5.96 -51.93 -0.31 0.94 16 36 H 0.09 1.86 6.96 -51.93 -0.36 1.50 16 37 H 0.06 1.04 8.14 -51.94 -0.42 0.62 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.44 6.92 -51.93 -0.36 1.08 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -36.04 348.47 -8.04 -44.09 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.83 Total: 2.41 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.05 Total: -5.55 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.55 Total: -48.06 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.07 Total: -15.79 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.04 -8.04 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593071373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.437 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds