Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.46908 * 2 1 4 4 C 1.34952 * 126.03620 * 124.97716 * 3 2 1 5 5 C 1.35318 * 107.74325 * 179.74900 * 4 3 2 6 6 C 1.39867 * 107.92194 * 0.38877 * 5 4 3 7 7 C 1.50700 * 125.89920 * 179.86219 * 6 5 4 8 8 C 1.50699 * 109.47020 * 124.71715 * 7 6 5 9 9 O 1.21297 * 119.99848 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.37106 * 119.99501 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99341 * 137.64872 * 11 10 8 13 13 C 1.38948 * 120.00233 * 317.64986 * 11 10 8 14 14 N 1.31408 * 120.00009 * 340.28405 * 13 11 10 15 15 Si 1.86797 * 119.99898 * 160.28567 * 13 11 10 16 16 H 1.48500 * 109.47494 * 89.99886 * 15 13 11 17 17 H 1.48508 * 109.47207 * 209.99946 * 15 13 11 18 18 H 1.48501 * 109.47244 * 329.99460 * 15 13 11 19 19 C 1.46492 * 120.00405 * 0.02562 * 10 8 7 20 20 C 1.54968 * 110.92327 * 131.62141 * 19 10 8 21 21 C 1.54269 * 104.15757 * 156.29544 * 20 19 10 22 22 C 1.53870 * 106.64331 * 336.45376 * 21 20 19 23 23 C 1.54272 * 106.59806 * 359.96838 * 22 21 20 24 24 N 1.30838 * 108.20107 * 359.60414 * 6 5 4 25 25 H 1.08994 * 109.47654 * 300.00243 * 1 2 3 26 26 H 1.09003 * 109.46984 * 60.00349 * 1 2 3 27 27 H 1.08997 * 109.47588 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47654 * 239.99757 * 2 1 3 29 29 H 1.09003 * 109.46984 * 119.99651 * 2 1 3 30 30 H 1.08002 * 126.12536 * 359.97438 * 4 3 2 31 31 H 1.08005 * 126.03782 * 180.27564 * 5 4 3 32 32 H 1.09001 * 109.46901 * 4.72148 * 7 6 5 33 33 H 1.08994 * 109.47501 * 244.72154 * 7 6 5 34 34 H 0.96997 * 119.99923 * 180.02562 * 14 13 11 35 35 H 1.08999 * 110.67139 * 8.32391 * 19 10 8 36 36 H 1.09001 * 110.47168 * 37.65041 * 20 19 10 37 37 H 1.08988 * 110.53577 * 274.98129 * 20 19 10 38 38 H 1.08994 * 110.03313 * 217.13924 * 21 20 19 39 39 H 1.09004 * 110.02593 * 95.76174 * 21 20 19 40 40 H 1.09003 * 110.03437 * 119.25667 * 22 21 20 41 41 H 1.08999 * 110.03179 * 240.63943 * 22 21 20 42 42 H 1.09003 * 110.48400 * 142.29000 * 23 22 21 43 43 H 1.08996 * 110.48824 * 264.80469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8727 1.9212 0.8942 5 6 3.0757 3.2122 0.5429 6 6 2.3125 3.4724 -0.5999 7 6 2.2361 4.7881 -1.3307 8 6 2.5937 4.5794 -2.7797 9 8 2.8819 3.4712 -3.1797 10 7 2.5934 5.6242 -3.6311 11 6 2.9183 5.4342 -4.9495 12 1 2.3455 5.9243 -5.7227 13 6 3.9845 4.6111 -5.2906 14 7 4.9076 4.3282 -4.3992 15 14 4.1057 3.9067 -7.0164 16 1 4.8729 4.8404 -7.8795 17 1 4.7992 2.5944 -6.9680 18 1 2.7413 3.7252 -7.5739 19 6 2.2459 6.9628 -3.1479 20 6 3.2868 8.0092 -3.6203 21 6 2.5180 9.3463 -3.5903 22 6 1.0238 8.9983 -3.7082 23 6 0.9357 7.4613 -3.8067 24 7 1.6808 2.3746 -0.9282 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3177 1.4130 1.7368 31 1 3.7129 3.9175 1.0557 32 1 2.9349 5.4941 -0.8820 33 1 1.2233 5.1848 -1.2599 34 1 5.6521 3.7539 -4.6375 35 1 2.1587 6.9691 -2.0614 36 1 3.6210 7.7841 -4.6331 37 1 4.1345 8.0411 -2.9360 38 1 2.8231 9.9714 -4.4294 39 1 2.7076 9.8649 -2.6505 40 1 0.4883 9.3472 -2.8252 41 1 0.6036 9.4552 -4.6042 42 1 0.0688 7.0929 -3.2581 43 1 0.8876 7.1479 -4.8495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593071373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = 23.314184 kcal Electronic energy + Delta-G solvation = -23972.024357 eV Core-core repulsion = 20632.172127 eV Total energy + Delta-G solvation = -3339.852231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00648 -40.36746 -38.25309 -35.64245 -35.03601 -33.58048 -32.19164 -30.59904 -29.38962 -29.11671 -28.25791 -26.39220 -24.08841 -21.90527 -21.85668 -21.37311 -20.89212 -20.10576 -18.12679 -17.83449 -17.63736 -16.77247 -16.25722 -16.15630 -15.73366 -15.59034 -15.17372 -14.88478 -14.64891 -14.27353 -14.04613 -13.75988 -13.60800 -13.45365 -13.19282 -12.96930 -12.88796 -12.82483 -12.57629 -12.48041 -12.22460 -12.14274 -11.97885 -11.92456 -11.79398 -11.30673 -11.27286 -11.08262 -10.68006 -10.09207 -9.84644 -9.34885 -8.93345 -8.12892 -5.85445 1.13315 1.33638 1.41137 1.47823 1.78772 1.94702 2.35646 2.58011 3.24824 3.32876 3.62123 3.95460 4.00419 4.01550 4.06204 4.12108 4.17922 4.35658 4.41829 4.48283 4.59646 4.64025 4.73052 4.76415 4.81304 4.86016 4.89867 4.93870 5.00568 5.02395 5.14104 5.18137 5.25431 5.29037 5.33747 5.49508 5.59969 5.63919 5.70712 5.81936 6.28957 6.35632 6.97664 7.13752 7.36210 7.83001 8.51333 8.95405 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.005570 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.871525 B = 5025.595388 C = 6286.982689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.122 3.878 3 N -0.384 5.384 4 C 0.055 3.945 5 C -0.290 4.290 6 C 0.073 3.927 7 C -0.047 4.047 8 C 0.466 3.534 9 O -0.573 6.573 10 N -0.463 5.463 11 C -0.340 4.340 12 H 0.074 0.926 13 C 0.022 3.978 14 N -0.865 5.865 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.299 1.299 18 H -0.272 1.272 19 C 0.119 3.881 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.130 4.130 24 N -0.313 5.313 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.137 0.863 30 H 0.218 0.782 31 H 0.161 0.839 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 1.643 12.636 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.002 3.998 3 N -0.168 5.168 4 C -0.090 4.090 5 C -0.320 4.320 6 C -0.094 4.094 7 C -0.089 4.089 8 C 0.254 3.746 9 O -0.453 6.453 10 N -0.185 5.185 11 C -0.468 4.468 12 H 0.092 0.908 13 C -0.184 4.184 14 N -0.501 5.501 15 Si 0.783 3.217 16 H -0.189 1.189 17 H -0.226 1.226 18 H -0.197 1.197 19 C 0.015 3.985 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.169 4.169 24 N -0.136 5.136 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.235 0.765 31 H 0.179 0.821 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.250 0.265 11.639 13.715 hybrid contribution 1.118 -0.298 -0.707 1.356 sum -6.132 -0.033 10.932 12.535 Atomic orbital electron populations 1.21971 0.93523 1.03867 1.01929 1.21976 0.96494 0.76400 1.04908 1.49095 1.36284 1.10800 1.20575 1.23136 0.94882 0.94301 0.96724 1.21672 1.10035 0.98496 1.01748 1.21963 0.97345 0.94458 0.95637 1.20021 1.03921 0.92836 0.92146 1.20499 0.81242 0.84850 0.88009 1.90507 1.50016 1.25978 1.78790 1.43469 1.62107 1.04986 1.07918 1.18921 1.12357 1.32330 0.83148 0.90835 1.25866 0.93933 0.97952 1.00610 1.69989 1.09666 1.34012 1.36466 0.85529 0.78029 0.77618 0.80566 1.18893 1.22571 1.19707 1.22365 0.94849 0.83232 0.98087 1.22472 0.97485 0.94914 1.01038 1.22055 0.94850 0.95734 1.02452 1.22028 0.96422 0.93718 1.02644 1.22624 0.97058 0.96753 1.00447 1.77328 1.25928 0.97543 1.12787 0.91945 0.94510 0.87978 0.91322 0.84479 0.76521 0.82098 0.87160 0.87558 0.93894 0.88810 0.93200 0.93192 0.91643 0.90141 0.89786 0.91357 0.91573 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.10 71.98 0.73 -2.60 16 2 C 0.12 2.83 7.23 86.38 0.62 3.46 16 3 N -0.38 -12.84 3.68 -348.07 -1.28 -14.12 16 4 C 0.06 1.57 11.45 83.54 0.96 2.53 16 5 C -0.29 -9.88 10.72 21.99 0.24 -9.64 16 6 C 0.07 3.07 6.02 43.10 0.26 3.33 16 7 C -0.05 -1.96 4.61 29.10 0.13 -1.83 16 8 C 0.47 25.18 6.97 87.66 0.61 25.79 16 9 O -0.57 -36.89 13.19 -3.08 -0.04 -36.93 16 10 N -0.46 -23.79 2.57 -606.34 -1.56 -25.35 16 11 C -0.34 -19.35 7.42 84.04 0.62 -18.73 16 12 H 0.07 4.09 7.02 -2.91 -0.02 4.07 16 13 C 0.02 1.32 4.33 84.93 0.37 1.68 16 14 N -0.87 -54.81 11.67 21.66 0.25 -54.55 16 15 Si 0.96 48.25 29.60 68.60 2.03 50.28 16 16 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 18 H -0.27 -13.49 7.11 99.48 0.71 -12.79 16 19 C 0.12 4.63 3.16 46.31 0.15 4.78 16 20 C -0.12 -4.48 6.32 31.70 0.20 -4.28 16 21 C -0.11 -3.00 6.80 31.32 0.21 -2.79 16 22 C -0.11 -2.77 6.80 31.32 0.21 -2.56 16 23 C -0.13 -4.36 6.42 31.67 0.20 -4.16 16 24 N -0.31 -13.91 11.76 -47.39 -0.56 -14.47 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.14 1.84 8.07 -2.39 -0.02 1.82 16 30 H 0.22 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.11 4.01 7.62 -2.39 -0.02 4.00 16 33 H 0.11 3.84 7.96 -2.39 -0.02 3.82 16 34 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.09 3.19 5.96 -2.39 -0.01 3.17 16 36 H 0.05 2.20 6.96 -2.39 -0.02 2.18 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 1.81 6.92 -2.39 -0.02 1.80 16 Total: -1.00 -84.93 348.47 5.34 -79.59 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.99 Total: 20.58 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.51 Total: -5.02 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -3.15 Total: -108.49 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.04 Total: -36.93 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -84.93 5.34 -79.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593071373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.903 kcal (2) G-P(sol) polarization free energy of solvation -84.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds