Wall clock time and date at job start Tue Mar 31 2020 06:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47493 * 2 1 4 4 C 1.46502 * 120.00084 * 236.00543 * 3 2 1 5 5 C 1.50698 * 109.46742 * 269.99389 * 4 3 2 6 6 H 1.08001 * 120.00671 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00115 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00349 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99709 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46968 * 89.99759 * 9 7 5 11 11 H 1.48495 * 109.46743 * 209.99732 * 9 7 5 12 12 H 1.48495 * 109.46854 * 330.00005 * 9 7 5 13 13 C 1.34776 * 119.99783 * 55.99647 * 3 2 1 14 14 O 1.21688 * 119.99886 * 186.74317 * 13 3 2 15 15 C 1.46758 * 120.00223 * 6.75273 * 13 3 2 16 16 C 1.36840 * 126.91331 * 22.08879 * 15 13 3 17 17 N 1.33448 * 107.83344 * 179.97438 * 16 15 13 18 18 C 1.30557 * 109.68934 * 359.97438 * 17 16 15 19 19 N 1.35050 * 108.93214 * 359.95404 * 18 17 16 20 20 C 1.46447 * 124.85373 * 179.76959 * 19 18 17 21 21 H 1.08996 * 109.57822 * 103.00385 * 20 19 18 22 22 C 1.52995 * 109.58516 * 223.27237 * 20 19 18 23 23 C 1.53270 * 108.92434 * 343.14530 * 20 19 18 24 24 C 1.53151 * 109.44417 * 50.16428 * 23 20 19 25 25 C 1.51111 * 127.09242 * 180.08132 * 18 17 16 26 26 H 1.09006 * 109.47054 * 309.93119 * 1 2 3 27 27 H 1.09004 * 109.47262 * 69.93286 * 1 2 3 28 28 H 1.09002 * 109.47395 * 189.93656 * 1 2 3 29 29 H 1.09002 * 109.47062 * 239.99640 * 2 1 3 30 30 H 1.08998 * 109.47544 * 120.00091 * 2 1 3 31 31 H 1.08997 * 109.47315 * 29.99461 * 4 3 2 32 32 H 1.09004 * 109.47242 * 149.99977 * 4 3 2 33 33 H 0.97001 * 119.99906 * 179.97438 * 8 7 5 34 34 H 1.08002 * 126.07906 * 359.97438 * 16 15 13 35 35 H 1.09002 * 109.47380 * 154.78630 * 22 20 19 36 36 H 1.09000 * 109.47172 * 274.79245 * 22 20 19 37 37 H 1.09002 * 109.46923 * 34.78534 * 22 20 19 38 38 H 1.08996 * 109.47650 * 170.15838 * 23 20 19 39 39 H 1.09007 * 109.46718 * 290.17006 * 23 20 19 40 40 H 1.08998 * 109.51525 * 50.58740 * 24 23 20 41 41 H 1.08995 * 109.51421 * 170.74527 * 24 23 20 42 42 H 1.08998 * 109.71260 * 44.26492 * 25 18 17 43 43 H 1.09004 * 109.70932 * 283.63603 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.9313 1.8353 -1.0519 5 6 4.3549 1.5984 -0.6180 6 1 4.5593 1.1536 0.3447 7 6 5.3967 1.9484 -1.4506 8 7 6.6391 1.7421 -1.0718 9 14 5.0435 2.7170 -3.1162 10 1 4.9855 4.1944 -2.9773 11 1 6.1223 2.3513 -4.0688 12 1 3.7418 2.2164 -3.6262 13 6 1.6276 2.2341 0.9676 14 8 1.9325 3.4103 0.9015 15 6 0.8345 1.7443 2.1012 16 6 0.7595 0.4559 2.5561 17 7 -0.0688 0.4395 3.6023 18 6 -0.5160 1.6450 3.8282 19 7 0.0201 2.4887 2.9201 20 6 -0.2502 3.9263 2.8514 21 1 0.5931 4.4769 3.2684 22 6 -0.4617 4.3393 1.3936 23 6 -1.5148 4.2336 3.6611 24 6 -1.3977 3.5989 5.0500 25 6 -1.4738 2.0728 4.9160 26 1 -0.3633 0.6597 0.7881 27 1 -0.3634 0.3526 -0.9653 28 1 -0.3634 -1.0122 0.1773 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.7338 1.2803 -1.9690 32 1 2.7785 2.8996 -1.2311 33 1 7.3720 1.9881 -1.6578 34 1 1.2783 -0.3960 2.1420 35 1 -1.0772 5.2382 1.3561 36 1 0.5037 4.5403 0.9291 37 1 -0.9623 3.5336 0.8567 38 1 -1.6278 5.3128 3.7630 39 1 -2.3841 3.8241 3.1464 40 1 -0.4442 3.8778 5.4985 41 1 -2.2143 3.9501 5.6808 42 1 -1.1905 1.6065 5.8596 43 1 -2.4886 1.7774 4.6494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593416879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:19 Heat of formation + Delta-G solvation = 42.333112 kcal Electronic energy + Delta-G solvation = -24682.733928 eV Core-core repulsion = 21343.706420 eV Total energy + Delta-G solvation = -3339.027508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.46686 -38.95848 -37.22148 -35.51794 -33.68213 -32.83943 -30.95027 -30.45580 -29.15104 -27.65415 -26.81477 -23.77902 -23.05774 -22.68163 -22.00806 -21.30960 -19.30965 -18.58682 -17.01171 -16.89685 -16.19200 -15.70655 -15.34136 -14.86824 -14.73143 -14.63528 -14.24612 -13.90260 -13.59446 -13.40509 -13.26119 -12.73352 -12.54607 -12.31133 -12.17173 -12.10909 -11.77856 -11.63471 -11.43529 -11.34505 -11.31717 -11.05828 -10.76956 -10.61620 -10.44789 -10.13189 -10.02436 -9.55262 -9.48993 -9.17055 -8.61423 -8.06468 -7.71034 -6.10850 -4.10406 1.67413 2.66804 3.05936 3.27209 3.33281 3.34735 3.75681 3.79130 4.19233 4.35473 4.37026 4.44716 4.50240 4.90500 5.03857 5.07992 5.16950 5.19865 5.23221 5.37420 5.42637 5.46119 5.54134 5.54360 5.56453 5.69388 5.73808 5.79804 5.83989 6.01030 6.10075 6.18574 6.32390 6.44923 6.47762 6.68538 6.77454 6.90412 7.23349 7.31602 7.56529 8.10191 8.16152 8.43579 8.84544 8.94154 9.48594 11.02410 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.004837 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.439622 B = 5787.715467 C = 6221.501372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 N -0.577 5.577 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.587 3.413 14 O -0.540 6.540 15 C -0.059 4.059 16 C 0.017 3.983 17 N -0.493 5.493 18 C 0.208 3.792 19 N -0.418 5.418 20 C 0.135 3.865 21 H 0.095 0.905 22 C -0.181 4.181 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.031 4.031 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.189 0.811 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 1.575 8.255 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.020 4.020 3 N -0.307 5.307 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.374 3.626 14 O -0.420 6.420 15 C -0.177 4.177 16 C -0.135 4.135 17 N -0.212 5.212 18 C -0.053 4.053 19 N -0.100 5.100 20 C 0.033 3.967 21 H 0.113 0.887 22 C -0.238 4.238 23 C -0.169 4.169 24 C -0.166 4.166 25 C -0.070 4.070 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.205 0.795 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.960 1.714 8.544 20.866 hybrid contribution 0.389 0.941 -1.360 1.699 sum -18.570 2.655 7.184 20.088 Atomic orbital electron populations 1.22567 0.96149 1.02715 1.02634 1.21747 0.93486 0.83651 1.03138 1.47630 1.45984 1.10508 1.26609 1.19758 0.88932 0.96250 0.85261 1.21338 0.88319 1.42093 1.05307 0.90608 1.24843 0.94841 0.95031 0.98143 1.69895 0.98485 1.47734 1.37272 0.86862 0.78328 0.80414 0.84159 1.19916 1.21014 1.19024 1.16607 0.79511 0.85572 0.80906 1.90598 1.57376 1.16235 1.77778 1.20864 1.04164 0.92542 1.00083 1.23322 0.99597 0.95609 0.95019 1.69916 1.13884 1.20119 1.17258 1.23370 1.00973 0.85570 0.95400 1.45327 1.32917 1.08787 1.22958 1.21607 0.98654 0.77585 0.98832 0.88691 1.22596 1.06107 1.01216 0.93916 1.22047 0.96970 1.02255 0.95584 1.21719 1.03430 0.94366 0.97053 1.20201 0.96460 0.95485 0.94858 0.91225 0.92771 0.91558 0.89394 0.91215 0.94874 0.94300 0.92506 0.79490 0.91506 0.87018 0.92637 0.89304 0.90683 0.91006 0.89975 0.88665 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.85 37.15 0.33 -2.21 16 2 C 0.10 1.68 5.93 -4.05 -0.02 1.66 16 3 N -0.58 -12.03 2.66 -176.58 -0.47 -12.50 16 4 C 0.22 5.26 4.26 -5.19 -0.02 5.24 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.59 12.37 6.66 -12.82 -0.09 12.29 16 14 O -0.54 -12.73 12.62 5.20 0.07 -12.66 16 15 C -0.06 -1.06 4.74 -82.43 -0.39 -1.45 16 16 C 0.02 0.29 8.52 -17.36 -0.15 0.14 16 17 N -0.49 -8.04 11.20 -10.31 -0.12 -8.16 16 18 C 0.21 2.99 7.64 -155.16 -1.19 1.80 16 19 N -0.42 -6.50 2.97 -102.73 -0.30 -6.80 16 20 C 0.14 1.77 3.27 -67.82 -0.22 1.55 16 21 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 22 C -0.18 -2.51 8.19 37.15 0.30 -2.21 16 23 C -0.13 -1.15 5.12 -26.51 -0.14 -1.28 16 24 C -0.13 -1.00 5.96 -26.45 -0.16 -1.15 16 25 C -0.03 -0.30 6.33 -27.48 -0.17 -0.47 16 26 H 0.07 1.07 4.37 -51.93 -0.23 0.84 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.38 7.77 -51.93 -0.40 0.98 16 30 H 0.07 1.08 5.16 -51.93 -0.27 0.81 16 31 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 32 H 0.04 0.99 6.77 -51.93 -0.35 0.64 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.19 2.89 4.77 -52.49 -0.25 2.63 16 35 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 36 H 0.11 1.96 4.96 -51.93 -0.26 1.70 16 37 H 0.05 0.81 8.03 -51.93 -0.42 0.40 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 40 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -33.95 328.76 -8.45 -42.40 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.34 Total: 2.41 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.35 Total: 0.46 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.12 Total: -54.17 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.95 -8.45 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593416879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.733 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds