Wall clock time and date at job start Tue Mar 31 2020 06:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47493 * 2 1 4 4 C 1.46502 * 120.00084 * 236.00543 * 3 2 1 5 5 C 1.50698 * 109.46742 * 269.99389 * 4 3 2 6 6 H 1.08001 * 120.00671 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00115 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00349 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99709 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46968 * 89.99759 * 9 7 5 11 11 H 1.48495 * 109.46743 * 209.99732 * 9 7 5 12 12 H 1.48495 * 109.46854 * 330.00005 * 9 7 5 13 13 C 1.34776 * 119.99783 * 55.99647 * 3 2 1 14 14 O 1.21688 * 119.99886 * 186.74317 * 13 3 2 15 15 C 1.46758 * 120.00223 * 6.75273 * 13 3 2 16 16 C 1.36840 * 126.91331 * 22.08879 * 15 13 3 17 17 N 1.33448 * 107.83344 * 179.97438 * 16 15 13 18 18 C 1.30557 * 109.68934 * 359.97438 * 17 16 15 19 19 N 1.35050 * 108.93214 * 359.95404 * 18 17 16 20 20 C 1.46447 * 124.85373 * 179.76959 * 19 18 17 21 21 H 1.08996 * 109.57822 * 103.00385 * 20 19 18 22 22 C 1.52995 * 109.58516 * 223.27237 * 20 19 18 23 23 C 1.53270 * 108.92434 * 343.14530 * 20 19 18 24 24 C 1.53151 * 109.44417 * 50.16428 * 23 20 19 25 25 C 1.51111 * 127.09242 * 180.08132 * 18 17 16 26 26 H 1.09006 * 109.47054 * 309.93119 * 1 2 3 27 27 H 1.09004 * 109.47262 * 69.93286 * 1 2 3 28 28 H 1.09002 * 109.47395 * 189.93656 * 1 2 3 29 29 H 1.09002 * 109.47062 * 239.99640 * 2 1 3 30 30 H 1.08998 * 109.47544 * 120.00091 * 2 1 3 31 31 H 1.08997 * 109.47315 * 29.99461 * 4 3 2 32 32 H 1.09004 * 109.47242 * 149.99977 * 4 3 2 33 33 H 0.97001 * 119.99906 * 179.97438 * 8 7 5 34 34 H 1.08002 * 126.07906 * 359.97438 * 16 15 13 35 35 H 1.09002 * 109.47380 * 154.78630 * 22 20 19 36 36 H 1.09000 * 109.47172 * 274.79245 * 22 20 19 37 37 H 1.09002 * 109.46923 * 34.78534 * 22 20 19 38 38 H 1.08996 * 109.47650 * 170.15838 * 23 20 19 39 39 H 1.09007 * 109.46718 * 290.17006 * 23 20 19 40 40 H 1.08998 * 109.51525 * 50.58740 * 24 23 20 41 41 H 1.08995 * 109.51421 * 170.74527 * 24 23 20 42 42 H 1.08998 * 109.71260 * 44.26492 * 25 18 17 43 43 H 1.09004 * 109.70932 * 283.63603 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.9313 1.8353 -1.0519 5 6 4.3549 1.5984 -0.6180 6 1 4.5593 1.1536 0.3447 7 6 5.3967 1.9484 -1.4506 8 7 6.6391 1.7421 -1.0718 9 14 5.0435 2.7170 -3.1162 10 1 4.9855 4.1944 -2.9773 11 1 6.1223 2.3513 -4.0688 12 1 3.7418 2.2164 -3.6262 13 6 1.6276 2.2341 0.9676 14 8 1.9325 3.4103 0.9015 15 6 0.8345 1.7443 2.1012 16 6 0.7595 0.4559 2.5561 17 7 -0.0688 0.4395 3.6023 18 6 -0.5160 1.6450 3.8282 19 7 0.0201 2.4887 2.9201 20 6 -0.2502 3.9263 2.8514 21 1 0.5931 4.4769 3.2684 22 6 -0.4617 4.3393 1.3936 23 6 -1.5148 4.2336 3.6611 24 6 -1.3977 3.5989 5.0500 25 6 -1.4738 2.0728 4.9160 26 1 -0.3633 0.6597 0.7881 27 1 -0.3634 0.3526 -0.9653 28 1 -0.3634 -1.0122 0.1773 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.7338 1.2803 -1.9690 32 1 2.7785 2.8996 -1.2311 33 1 7.3720 1.9881 -1.6578 34 1 1.2783 -0.3960 2.1420 35 1 -1.0772 5.2382 1.3561 36 1 0.5037 4.5403 0.9291 37 1 -0.9623 3.5336 0.8567 38 1 -1.6278 5.3128 3.7630 39 1 -2.3841 3.8241 3.1464 40 1 -0.4442 3.8778 5.4985 41 1 -2.2143 3.9501 5.6808 42 1 -1.1905 1.6065 5.8596 43 1 -2.4886 1.7774 4.6494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593416879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:18 Heat of formation + Delta-G solvation = 20.125137 kcal Electronic energy + Delta-G solvation = -24683.696938 eV Core-core repulsion = 21343.706420 eV Total energy + Delta-G solvation = -3339.990518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.67217 -40.53097 -38.26055 -37.01998 -35.00539 -34.59682 -32.50909 -31.67514 -30.37787 -29.31795 -27.93532 -25.22283 -24.46031 -23.91831 -23.09193 -22.69789 -20.53630 -19.78981 -19.13336 -18.30292 -17.61710 -17.02755 -16.79793 -16.39078 -15.99858 -15.67177 -15.55101 -15.21992 -14.83817 -14.54934 -14.48287 -14.32421 -13.88672 -13.83887 -13.40872 -13.33294 -13.21836 -13.01165 -12.82345 -12.53650 -12.38171 -12.11047 -12.03903 -11.99602 -11.80723 -11.75998 -11.62289 -11.30758 -10.84655 -10.73994 -10.68133 -9.50752 -9.23303 -8.35133 -6.41333 0.34446 1.32442 1.36337 1.44799 1.49498 1.80174 2.25602 2.29835 2.32698 2.98898 3.25664 3.46313 3.52106 3.65078 3.77565 3.96189 4.07942 4.15618 4.24348 4.32105 4.37039 4.45932 4.52583 4.63243 4.70749 4.76455 4.81397 4.87358 4.87670 4.93971 4.96397 5.01207 5.05377 5.18006 5.27131 5.28409 5.31050 5.42510 5.51032 5.64854 6.13942 6.21577 6.53724 6.60434 6.88799 7.16532 7.30208 8.81910 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.004837 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.439622 B = 5787.715467 C = 6221.501372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.586 5.586 4 C 0.228 3.772 5 C -0.540 4.540 6 H 0.027 0.973 7 C 0.014 3.986 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.580 3.420 14 O -0.577 6.577 15 C -0.090 4.090 16 C 0.026 3.974 17 N -0.515 5.515 18 C 0.222 3.778 19 N -0.423 5.423 20 C 0.126 3.874 21 H 0.078 0.922 22 C -0.172 4.172 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.033 4.033 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.269 0.731 34 H 0.195 0.805 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.486 1.823 8.533 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.316 5.316 4 C 0.107 3.893 5 C -0.578 4.578 6 H 0.046 0.954 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.369 3.631 14 O -0.459 6.459 15 C -0.208 4.208 16 C -0.127 4.127 17 N -0.234 5.234 18 C -0.040 4.040 19 N -0.104 5.104 20 C 0.025 3.975 21 H 0.096 0.904 22 C -0.229 4.229 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.072 4.072 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.211 0.789 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.126 0.874 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.375 1.934 8.833 24.134 hybrid contribution 1.457 0.832 -1.295 2.119 sum -20.918 2.766 7.539 22.407 Atomic orbital electron populations 1.22420 0.93788 1.04036 1.02316 1.22021 0.95359 0.81359 1.03755 1.47685 1.45533 1.12291 1.26085 1.19438 0.87115 0.95814 0.86964 1.21540 0.91125 1.41657 1.03513 0.95434 1.25836 0.94323 0.95389 1.02873 1.70052 0.99801 1.49287 1.39309 0.85707 0.79696 0.78962 0.78542 1.20071 1.19975 1.15977 1.17053 0.79420 0.85122 0.81464 1.90591 1.58877 1.17770 1.78697 1.20462 1.06148 0.93520 1.00630 1.23453 0.99097 0.95312 0.94882 1.69975 1.14634 1.21386 1.17397 1.24459 0.99761 0.84789 0.94989 1.45557 1.32425 1.09768 1.22667 1.21859 1.00507 0.76186 0.98968 0.90416 1.22437 1.04133 1.02172 0.94201 1.22074 0.94358 1.04105 0.95349 1.21748 1.04513 0.92870 0.96832 1.20556 0.96229 0.96883 0.93504 0.92578 0.92426 0.88806 0.88659 0.90725 0.92663 0.95729 0.92187 0.78913 0.88303 0.91092 0.93805 0.86713 0.89758 0.91957 0.86165 0.87374 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.46 8.85 71.98 0.64 -3.82 16 2 C 0.10 3.16 5.93 86.38 0.51 3.67 16 3 N -0.59 -25.17 2.66 -830.80 -2.21 -27.38 16 4 C 0.23 11.23 4.26 85.63 0.37 11.60 16 5 C -0.54 -32.04 9.94 25.60 0.25 -31.79 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 7 C 0.01 0.83 5.47 84.66 0.46 1.29 16 8 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 9 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 13 C 0.58 25.56 6.66 86.47 0.58 26.14 16 14 O -0.58 -28.84 12.62 -4.31 -0.05 -28.89 16 15 C -0.09 -3.34 4.74 40.17 0.19 -3.15 16 16 C 0.03 0.87 8.52 84.12 0.72 1.59 16 17 N -0.52 -16.23 11.20 -186.54 -2.09 -18.31 16 18 C 0.22 5.99 7.64 138.24 1.06 7.04 16 19 N -0.42 -12.98 2.97 -478.92 -1.42 -14.41 16 20 C 0.13 3.22 3.27 45.09 0.15 3.37 16 21 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 22 C -0.17 -4.78 8.19 71.98 0.59 -4.19 16 23 C -0.12 -1.72 5.12 30.74 0.16 -1.56 16 24 C -0.12 -1.41 5.96 30.77 0.18 -1.23 16 25 C -0.03 -0.51 6.33 30.11 0.19 -0.32 16 26 H 0.06 1.68 4.37 -2.38 -0.01 1.67 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.10 2.93 7.77 -2.39 -0.02 2.91 16 30 H 0.07 2.35 5.16 -2.39 -0.01 2.33 16 31 H 0.06 2.47 6.95 -2.39 -0.02 2.45 16 32 H 0.02 1.28 6.77 -2.39 -0.02 1.27 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.19 5.99 4.77 -2.91 -0.01 5.98 16 35 H 0.10 1.99 7.92 -2.39 -0.02 1.98 16 36 H 0.07 2.62 4.96 -2.39 -0.01 2.61 16 37 H 0.04 1.29 8.03 -2.39 -0.02 1.27 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 40 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 41 H 0.12 0.59 8.14 -2.39 -0.02 0.58 16 42 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.08 328.76 3.40 -75.68 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.96 Total: 18.28 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.04 Total: 8.65 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -5.42 Total: -119.84 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -79.08 3.40 -75.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593416879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.805 kcal (2) G-P(sol) polarization free energy of solvation -79.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds