Wall clock time and date at job start Tue Mar 31 2020 06:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47103 * 2 1 4 4 C 1.46506 * 119.99430 * 94.06538 * 3 2 1 5 5 C 1.50697 * 109.47045 * 264.05587 * 4 3 2 6 6 H 1.08004 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00025 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47148 * 60.00123 * 9 7 5 11 11 H 1.48499 * 109.46908 * 300.00013 * 9 7 5 12 12 H 1.48504 * 109.47081 * 180.02562 * 9 7 5 13 13 C 1.34768 * 120.00376 * 274.05954 * 3 2 1 14 14 O 1.21285 * 120.00162 * 3.95354 * 13 3 2 15 15 C 1.50700 * 120.00159 * 183.94763 * 13 3 2 16 16 H 1.09004 * 109.43279 * 28.79688 * 15 13 3 17 17 C 1.53120 * 109.43119 * 268.89791 * 15 13 3 18 18 C 1.53499 * 109.30712 * 170.01546 * 17 15 13 19 19 C 1.50711 * 108.05993 * 48.70459 * 18 17 15 20 20 C 1.33858 * 128.68330 * 164.25386 * 19 18 17 21 21 N 1.34428 * 107.79690 * 180.09797 * 20 19 18 22 22 C 1.30781 * 109.32217 * 359.97438 * 21 20 19 23 23 C 1.50702 * 125.72475 * 179.97438 * 22 21 20 24 24 N 1.34407 * 108.55312 * 359.93913 * 22 21 20 25 25 C 1.46474 * 128.44330 * 180.19598 * 24 22 21 26 26 H 1.08995 * 109.47173 * 299.99550 * 1 2 3 27 27 H 1.09003 * 109.47185 * 59.99416 * 1 2 3 28 28 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46904 * 240.00578 * 2 1 3 30 30 H 1.09003 * 109.47185 * 120.00584 * 2 1 3 31 31 H 1.09007 * 109.46949 * 144.05550 * 4 3 2 32 32 H 1.08996 * 109.47140 * 24.06328 * 4 3 2 33 33 H 0.96998 * 119.99975 * 359.97438 * 8 7 5 34 34 H 1.08997 * 109.49776 * 289.96513 * 17 15 13 35 35 H 1.08997 * 109.49765 * 50.03343 * 17 15 13 36 36 H 1.09005 * 109.74254 * 168.34537 * 18 17 15 37 37 H 1.08996 * 109.74438 * 289.01657 * 18 17 15 38 38 H 1.08001 * 126.10093 * 0.06910 * 20 19 18 39 39 H 1.09004 * 109.47186 * 90.01560 * 23 22 21 40 40 H 1.08995 * 109.47323 * 210.02568 * 23 22 21 41 41 H 1.09006 * 109.46678 * 330.01856 * 23 22 21 42 42 H 1.09004 * 109.60132 * 42.89224 * 25 24 22 43 43 H 1.09002 * 109.59736 * 282.41645 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3472 2.0417 1.2657 5 6 1.1686 2.8600 1.7264 6 1 0.2647 2.8851 1.1358 7 6 1.2441 3.5764 2.9019 8 7 2.3449 3.5463 3.6209 9 14 -0.2172 4.5901 3.4734 10 1 -1.3900 3.7008 3.6702 11 1 -0.5397 5.6152 2.4485 12 1 0.1167 5.2608 4.7557 13 6 2.1650 2.0441 -1.1642 14 8 1.8255 1.5234 -2.2056 15 6 2.7509 3.4326 -1.1720 16 1 3.4344 3.5426 -0.3300 17 6 1.6236 4.4618 -1.0507 18 6 2.2290 5.8513 -0.8080 19 6 3.3210 6.0691 -1.8237 20 6 3.9180 7.2136 -2.1779 21 7 4.8307 6.9259 -3.1220 22 6 4.8158 5.6401 -3.3607 23 6 5.6905 4.9194 -4.3540 24 7 3.8899 5.0693 -2.5711 25 6 3.5168 3.6558 -2.4805 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.2085 2.6942 1.1219 32 1 2.5833 1.2890 2.0177 33 1 3.1036 3.0196 3.3243 34 1 1.0418 4.4743 -1.9723 35 1 0.9762 4.1955 -0.2153 36 1 1.4592 6.6140 -0.9257 37 1 2.6456 5.9008 0.1979 38 1 3.7042 8.1934 -1.7770 39 1 6.6110 4.6017 -3.8641 40 1 5.1623 4.0461 -4.7367 41 1 5.9308 5.5893 -5.1796 42 1 4.4155 3.0390 -2.4886 43 1 2.8809 3.3906 -3.3252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593417442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:08 Heat of formation + Delta-G solvation = 7.274497 kcal Electronic energy + Delta-G solvation = -24539.933954 eV Core-core repulsion = 21199.386190 eV Total energy + Delta-G solvation = -3340.547764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17787 -39.65466 -36.09582 -35.49950 -33.15179 -33.06685 -31.33906 -30.37057 -29.40777 -26.79477 -26.18043 -24.71725 -23.11707 -22.74510 -21.77580 -20.59065 -18.91873 -18.37728 -17.26544 -16.64967 -16.35454 -15.73129 -15.40994 -14.60830 -14.20835 -13.88264 -13.77232 -13.72486 -13.60293 -13.33637 -13.07656 -12.90318 -12.77915 -12.56324 -12.32568 -12.16847 -11.89191 -11.71565 -11.55945 -11.41615 -10.94693 -10.89097 -10.76957 -10.46668 -10.39324 -10.22318 -9.71503 -9.38189 -9.33672 -9.16045 -8.61541 -7.94459 -7.88975 -6.61897 -4.38793 2.26640 2.87925 3.08976 3.28815 3.31222 3.32531 3.48669 3.67449 4.32233 4.60000 4.66567 4.82682 4.85580 5.07282 5.09400 5.20445 5.38416 5.45300 5.48322 5.54316 5.58946 5.60057 5.69686 5.74205 5.82527 5.82961 5.95064 6.06752 6.09233 6.12762 6.33482 6.39836 6.46994 6.63695 6.67111 6.67428 6.73757 6.99926 7.22325 7.42737 7.71724 7.93540 8.23133 8.29503 8.52284 8.70047 9.31213 10.73438 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.006267 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.239132 B = 4466.600006 C = 5832.201940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 N -0.587 5.587 4 C 0.225 3.775 5 C -0.613 4.613 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.900 5.900 9 Si 1.061 2.939 10 H -0.287 1.287 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.528 3.472 14 O -0.571 6.571 15 C -0.110 4.110 16 H 0.105 0.895 17 C -0.115 4.115 18 C -0.043 4.043 19 C -0.012 4.012 20 C -0.033 4.033 21 N -0.497 5.497 22 C 0.196 3.804 23 C -0.065 4.065 24 N -0.447 5.447 25 C 0.119 3.881 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.268 0.732 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.168 0.832 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -0.577 -8.687 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 N -0.317 5.317 4 C 0.105 3.895 5 C -0.651 4.651 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.535 5.535 9 Si 0.889 3.111 10 H -0.213 1.213 11 H -0.210 1.210 12 H -0.206 1.206 13 C 0.316 3.684 14 O -0.452 6.452 15 C -0.131 4.131 16 H 0.123 0.877 17 C -0.153 4.153 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.180 4.180 21 N -0.216 5.216 22 C -0.065 4.065 23 C -0.123 4.123 24 N -0.131 5.131 25 C -0.004 4.004 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.185 0.815 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.538 0.543 -8.372 8.529 hybrid contribution -0.022 -1.631 -0.561 1.725 sum 1.516 -1.089 -8.933 9.126 Atomic orbital electron populations 1.22080 0.96119 1.00932 1.02998 1.21260 0.94788 0.82819 1.01426 1.48074 1.62793 1.13197 1.07624 1.19598 0.96978 0.92928 0.80021 1.22211 1.00618 1.32026 1.10282 0.92330 1.25746 1.01875 0.97025 0.93132 1.70840 1.03868 1.39231 1.39560 0.83626 0.74439 0.76271 0.76779 1.21331 1.20962 1.20579 1.19977 0.78535 0.86523 0.83410 1.90608 1.52800 1.69525 1.32301 1.21431 0.99474 0.94485 0.97742 0.87741 1.21707 0.96986 0.92304 1.04284 1.20237 0.93964 0.97567 0.96397 1.21352 1.02223 0.88547 1.00565 1.21752 0.98321 0.97831 1.00105 1.70380 1.22141 1.11650 1.17476 1.23004 0.95435 0.89610 0.98480 1.20122 0.97140 0.99176 0.95889 1.45233 1.29263 1.08014 1.30577 1.21795 1.00366 0.78445 0.99747 0.91311 0.92753 0.92885 0.91508 0.91060 0.95616 0.95467 0.92119 0.92174 0.86868 0.89502 0.89099 0.81516 0.90482 0.91036 0.89443 0.89540 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.21 37.16 0.38 -2.32 16 2 C 0.12 2.06 6.10 -4.04 -0.02 2.03 16 3 N -0.59 -11.35 2.48 -175.06 -0.43 -11.79 16 4 C 0.22 4.82 4.31 -5.19 -0.02 4.80 16 5 C -0.61 -14.36 7.43 -34.44 -0.26 -14.61 16 6 H 0.06 1.41 7.13 -52.48 -0.37 1.04 16 7 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 8 N -0.90 -23.92 13.65 55.43 0.76 -23.16 16 9 Si 1.06 22.43 29.90 -169.99 -5.08 17.34 16 10 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.53 10.10 6.61 -10.99 -0.07 10.03 16 14 O -0.57 -11.78 15.70 5.55 0.09 -11.70 16 15 C -0.11 -1.90 1.90 -91.58 -0.17 -2.07 16 16 H 0.10 1.93 5.91 -51.93 -0.31 1.62 16 17 C -0.12 -1.98 5.19 -26.41 -0.14 -2.11 16 18 C -0.04 -0.69 6.31 -27.62 -0.17 -0.86 16 19 C -0.01 -0.20 6.57 -81.73 -0.54 -0.74 16 20 C -0.03 -0.54 11.84 -17.95 -0.21 -0.76 16 21 N -0.50 -8.60 11.27 -11.02 -0.12 -8.73 16 22 C 0.20 3.06 7.94 -155.76 -1.24 1.83 16 23 C -0.06 -0.72 10.24 36.01 0.37 -0.35 16 24 N -0.45 -7.17 3.13 -109.45 -0.34 -7.51 16 25 C 0.12 1.83 5.67 -3.93 -0.02 1.80 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.10 7.61 -51.93 -0.40 0.71 16 30 H 0.07 1.13 7.80 -51.93 -0.40 0.73 16 31 H 0.03 0.57 5.83 -51.93 -0.30 0.27 16 32 H 0.03 0.61 7.66 -51.93 -0.40 0.22 16 33 H 0.27 7.05 7.22 -40.82 -0.29 6.76 16 34 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.11 2.19 5.30 -51.93 -0.28 1.92 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.10 1.49 7.53 -51.93 -0.39 1.10 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -28.56 344.51 -8.75 -37.30 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.58 Total: 5.78 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.22 Total: -2.73 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.14 Total: -51.19 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.08 Total: 17.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.56 -8.75 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.576 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds