Wall clock time and date at job start Tue Mar 31 2020 06:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47103 * 2 1 4 4 C 1.46506 * 119.99430 * 94.06538 * 3 2 1 5 5 C 1.50697 * 109.47045 * 264.05587 * 4 3 2 6 6 H 1.08004 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00025 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47148 * 60.00123 * 9 7 5 11 11 H 1.48499 * 109.46908 * 300.00013 * 9 7 5 12 12 H 1.48504 * 109.47081 * 180.02562 * 9 7 5 13 13 C 1.34768 * 120.00376 * 274.05954 * 3 2 1 14 14 O 1.21285 * 120.00162 * 3.95354 * 13 3 2 15 15 C 1.50700 * 120.00159 * 183.94763 * 13 3 2 16 16 H 1.09004 * 109.43279 * 28.79688 * 15 13 3 17 17 C 1.53120 * 109.43119 * 268.89791 * 15 13 3 18 18 C 1.53499 * 109.30712 * 170.01546 * 17 15 13 19 19 C 1.50711 * 108.05993 * 48.70459 * 18 17 15 20 20 C 1.33858 * 128.68330 * 164.25386 * 19 18 17 21 21 N 1.34428 * 107.79690 * 180.09797 * 20 19 18 22 22 C 1.30781 * 109.32217 * 359.97438 * 21 20 19 23 23 C 1.50702 * 125.72475 * 179.97438 * 22 21 20 24 24 N 1.34407 * 108.55312 * 359.93913 * 22 21 20 25 25 C 1.46474 * 128.44330 * 180.19598 * 24 22 21 26 26 H 1.08995 * 109.47173 * 299.99550 * 1 2 3 27 27 H 1.09003 * 109.47185 * 59.99416 * 1 2 3 28 28 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46904 * 240.00578 * 2 1 3 30 30 H 1.09003 * 109.47185 * 120.00584 * 2 1 3 31 31 H 1.09007 * 109.46949 * 144.05550 * 4 3 2 32 32 H 1.08996 * 109.47140 * 24.06328 * 4 3 2 33 33 H 0.96998 * 119.99975 * 359.97438 * 8 7 5 34 34 H 1.08997 * 109.49776 * 289.96513 * 17 15 13 35 35 H 1.08997 * 109.49765 * 50.03343 * 17 15 13 36 36 H 1.09005 * 109.74254 * 168.34537 * 18 17 15 37 37 H 1.08996 * 109.74438 * 289.01657 * 18 17 15 38 38 H 1.08001 * 126.10093 * 0.06910 * 20 19 18 39 39 H 1.09004 * 109.47186 * 90.01560 * 23 22 21 40 40 H 1.08995 * 109.47323 * 210.02568 * 23 22 21 41 41 H 1.09006 * 109.46678 * 330.01856 * 23 22 21 42 42 H 1.09004 * 109.60132 * 42.89224 * 25 24 22 43 43 H 1.09002 * 109.59736 * 282.41645 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3472 2.0417 1.2657 5 6 1.1686 2.8600 1.7264 6 1 0.2647 2.8851 1.1358 7 6 1.2441 3.5764 2.9019 8 7 2.3449 3.5463 3.6209 9 14 -0.2172 4.5901 3.4734 10 1 -1.3900 3.7008 3.6702 11 1 -0.5397 5.6152 2.4485 12 1 0.1167 5.2608 4.7557 13 6 2.1650 2.0441 -1.1642 14 8 1.8255 1.5234 -2.2056 15 6 2.7509 3.4326 -1.1720 16 1 3.4344 3.5426 -0.3300 17 6 1.6236 4.4618 -1.0507 18 6 2.2290 5.8513 -0.8080 19 6 3.3210 6.0691 -1.8237 20 6 3.9180 7.2136 -2.1779 21 7 4.8307 6.9259 -3.1220 22 6 4.8158 5.6401 -3.3607 23 6 5.6905 4.9194 -4.3540 24 7 3.8899 5.0693 -2.5711 25 6 3.5168 3.6558 -2.4805 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.2085 2.6942 1.1219 32 1 2.5833 1.2890 2.0177 33 1 3.1036 3.0196 3.3243 34 1 1.0418 4.4743 -1.9723 35 1 0.9762 4.1955 -0.2153 36 1 1.4592 6.6140 -0.9257 37 1 2.6456 5.9008 0.1979 38 1 3.7042 8.1934 -1.7770 39 1 6.6110 4.6017 -3.8641 40 1 5.1623 4.0461 -4.7367 41 1 5.9308 5.5893 -5.1796 42 1 4.4155 3.0390 -2.4886 43 1 2.8809 3.3906 -3.3252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593417442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:08 Heat of formation + Delta-G solvation = -6.951893 kcal Electronic energy + Delta-G solvation = -24540.550857 eV Core-core repulsion = 21199.386190 eV Total energy + Delta-G solvation = -3341.164666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.41291 -41.17855 -37.47454 -37.10521 -34.89024 -34.34760 -32.69254 -31.62645 -30.68099 -28.56418 -27.36903 -26.07127 -24.94274 -24.09343 -23.11580 -21.82626 -20.28232 -19.90008 -18.94375 -18.16571 -17.62835 -17.18577 -16.77899 -16.12222 -15.65494 -15.45096 -15.17042 -15.07007 -14.92468 -14.65101 -14.50705 -14.23355 -13.97870 -13.90550 -13.61789 -13.43502 -13.34003 -13.19891 -12.88792 -12.76644 -12.52794 -12.48342 -12.13993 -11.98178 -11.86448 -11.80303 -11.15306 -10.98043 -10.83088 -10.50330 -10.49260 -9.54801 -9.16919 -8.57464 -6.34812 1.04365 1.49939 1.59522 1.61883 1.68522 1.81087 2.09120 2.21525 2.57608 3.18171 3.34428 3.40417 3.53270 3.58978 3.79273 3.93417 4.14292 4.16793 4.23472 4.29405 4.33804 4.39075 4.46701 4.54508 4.57513 4.65912 4.69786 4.81839 4.85024 4.89939 4.90385 4.97931 5.00630 5.11812 5.20468 5.30763 5.41919 5.63596 5.77485 5.84996 6.13667 6.24291 6.48529 6.58507 7.07193 7.13459 7.41282 8.77659 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.006267 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.239132 B = 4466.600006 C = 5832.201940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.113 3.887 3 N -0.591 5.591 4 C 0.236 3.764 5 C -0.600 4.600 6 H 0.051 0.949 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 1.096 2.904 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.289 1.289 13 C 0.528 3.472 14 O -0.584 6.584 15 C -0.105 4.105 16 H 0.090 0.910 17 C -0.109 4.109 18 C -0.035 4.035 19 C -0.030 4.030 20 C -0.041 4.041 21 N -0.525 5.525 22 C 0.197 3.803 23 C -0.065 4.065 24 N -0.453 5.453 25 C 0.128 3.872 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.185 0.815 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -0.829 -9.844 10.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 N -0.321 5.321 4 C 0.115 3.885 5 C -0.639 4.639 6 H 0.070 0.930 7 C -0.211 4.211 8 N -0.567 5.567 9 Si 0.919 3.081 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.215 1.215 13 C 0.316 3.684 14 O -0.466 6.466 15 C -0.126 4.126 16 H 0.108 0.892 17 C -0.147 4.147 18 C -0.073 4.073 19 C -0.144 4.144 20 C -0.187 4.187 21 N -0.246 5.246 22 C -0.065 4.065 23 C -0.123 4.123 24 N -0.137 5.137 25 C 0.005 3.995 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.202 0.798 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.350 0.277 -9.547 9.646 hybrid contribution 0.052 -1.610 -0.256 1.631 sum 1.401 -1.333 -9.803 9.992 Atomic orbital electron populations 1.21984 0.95585 1.02476 1.01116 1.21479 0.95213 0.81773 1.02506 1.48104 1.62922 1.14091 1.06933 1.19314 0.96097 0.92396 0.80676 1.22315 1.00674 1.31267 1.09611 0.93031 1.26754 1.02935 0.97852 0.93597 1.70940 1.04501 1.40662 1.40576 0.83175 0.72584 0.75854 0.76468 1.20329 1.18987 1.21527 1.20218 0.78174 0.86972 0.83036 1.90597 1.53471 1.70004 1.32543 1.21351 0.99297 0.93489 0.98480 0.89173 1.21595 0.96660 0.93102 1.03334 1.20153 0.94318 0.97237 0.95589 1.21444 1.02805 0.88942 1.01203 1.22127 0.98041 0.98680 0.99892 1.70410 1.23026 1.12738 1.18392 1.23859 0.94947 0.89489 0.98240 1.20329 0.97089 0.99603 0.95299 1.45336 1.29496 1.08034 1.30813 1.21733 1.00880 0.78553 0.98318 0.93302 0.94282 0.89711 0.90550 0.89833 0.96178 0.96393 0.93068 0.91854 0.89160 0.87562 0.90495 0.79830 0.88977 0.89408 0.88312 0.87732 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.21 71.98 0.74 -4.14 16 2 C 0.11 3.71 6.10 86.38 0.53 4.23 16 3 N -0.59 -22.55 2.48 -826.15 -2.05 -24.60 16 4 C 0.24 10.18 4.31 85.63 0.37 10.55 16 5 C -0.60 -28.16 7.43 25.60 0.19 -27.97 16 6 H 0.05 2.48 7.13 -2.91 -0.02 2.46 16 7 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 8 N -0.93 -49.98 13.65 21.45 0.29 -49.68 16 9 Si 1.10 44.78 29.90 68.60 2.05 46.83 16 10 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 12 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 13 C 0.53 19.80 6.61 87.66 0.58 20.38 16 14 O -0.58 -23.37 15.70 -3.05 -0.05 -23.42 16 15 C -0.10 -3.56 1.90 -11.42 -0.02 -3.58 16 16 H 0.09 3.35 5.91 -2.38 -0.01 3.33 16 17 C -0.11 -3.70 5.19 30.80 0.16 -3.54 16 18 C -0.03 -1.08 6.31 30.02 0.19 -0.89 16 19 C -0.03 -0.95 6.57 40.73 0.27 -0.68 16 20 C -0.04 -1.31 11.84 83.30 0.99 -0.32 16 21 N -0.53 -17.53 11.27 -188.78 -2.13 -19.65 16 22 C 0.20 5.78 7.94 138.25 1.10 6.88 16 23 C -0.06 -1.27 10.24 71.24 0.73 -0.54 16 24 N -0.45 -13.89 3.13 -500.18 -1.57 -15.46 16 25 C 0.13 3.72 5.67 86.47 0.49 4.21 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.39 7.61 -2.39 -0.02 2.37 16 30 H 0.08 2.53 7.80 -2.39 -0.02 2.51 16 31 H 0.02 0.91 5.83 -2.38 -0.01 0.90 16 32 H 0.02 0.82 7.66 -2.39 -0.02 0.80 16 33 H 0.26 13.93 7.22 -92.71 -0.67 13.26 16 34 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 35 H 0.09 3.50 5.30 -2.39 -0.01 3.48 16 36 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 37 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.18 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.09 1.43 7.95 -2.39 -0.02 1.41 16 41 H 0.10 1.71 8.14 -2.38 -0.02 1.70 16 42 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 43 H 0.10 2.84 7.53 -2.39 -0.02 2.82 16 Total: -1.00 -60.10 344.51 4.42 -55.68 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 1.10 Total: 25.79 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.76 Total: 4.51 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -5.45 Total: -109.39 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.05 Total: 46.83 kcal Total: -60.10 4.42 -55.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.728 kcal (2) G-P(sol) polarization free energy of solvation -60.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds