Wall clock time and date at job start Tue Mar 31 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47191 * 2 1 4 4 C 1.46501 * 120.00097 * 94.40770 * 3 2 1 5 5 C 1.50700 * 109.47361 * 276.29950 * 4 3 2 6 6 H 1.08001 * 119.99770 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99799 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99622 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47266 * 239.99854 * 9 7 5 12 12 H 1.48510 * 109.46801 * 120.00207 * 9 7 5 13 13 C 1.34781 * 119.99888 * 274.40919 * 3 2 1 14 14 O 1.21278 * 120.00019 * 4.80092 * 13 3 2 15 15 C 1.50702 * 119.99938 * 184.79872 * 13 3 2 16 16 H 1.08994 * 109.43334 * 305.11213 * 15 13 3 17 17 C 1.53121 * 109.42826 * 65.01422 * 15 13 3 18 18 C 1.53518 * 109.29487 * 190.02340 * 17 15 13 19 19 C 1.50711 * 108.02268 * 311.20637 * 18 17 15 20 20 C 1.33862 * 128.67767 * 195.85949 * 19 18 17 21 21 N 1.34430 * 107.79273 * 179.88532 * 20 19 18 22 22 C 1.30785 * 109.32366 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.72085 * 180.02562 * 22 21 20 24 24 N 1.34408 * 108.55135 * 0.04277 * 22 21 20 25 25 C 1.46472 * 128.43893 * 179.87001 * 24 22 21 26 26 H 1.09009 * 109.47036 * 62.21450 * 1 2 3 27 27 H 1.08998 * 109.47757 * 182.21232 * 1 2 3 28 28 H 1.09001 * 109.47470 * 302.21870 * 1 2 3 29 29 H 1.09001 * 109.47071 * 239.99447 * 2 1 3 30 30 H 1.09006 * 109.46649 * 119.99539 * 2 1 3 31 31 H 1.08999 * 109.46788 * 156.29983 * 4 3 2 32 32 H 1.08994 * 109.47219 * 36.30286 * 4 3 2 33 33 H 0.96999 * 120.00147 * 359.97438 * 8 7 5 34 34 H 1.08999 * 109.49680 * 309.92802 * 17 15 13 35 35 H 1.09001 * 109.49431 * 70.02555 * 17 15 13 36 36 H 1.08999 * 109.73065 * 191.59623 * 18 17 15 37 37 H 1.08995 * 109.82642 * 70.87990 * 18 17 15 38 38 H 1.07993 * 126.09861 * 359.88497 * 20 19 18 39 39 H 1.08996 * 109.46936 * 269.95828 * 23 22 21 40 40 H 1.09000 * 109.47086 * 29.95993 * 23 22 21 41 41 H 1.09001 * 109.47000 * 149.95824 * 23 22 21 42 42 H 1.08999 * 109.59884 * 77.54341 * 25 24 22 43 43 H 1.08993 * 109.73377 * 317.14813 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3545 2.0393 1.2650 5 6 1.1029 2.6051 1.8850 6 1 0.1522 2.4866 1.3864 7 6 1.1715 3.2738 3.0888 8 7 2.3292 3.4184 3.6956 9 14 -0.3798 3.9757 3.8569 10 1 -1.5428 3.6807 2.9818 11 1 -0.2351 5.4457 4.0099 12 1 -0.5950 3.3581 5.1903 13 6 2.1584 2.0464 -1.1638 14 8 1.7987 1.5338 -2.2024 15 6 2.7619 3.4273 -1.1745 16 1 2.2081 4.0703 -0.4905 17 6 4.2242 3.3475 -0.7273 18 6 4.7624 4.7667 -0.4973 19 6 4.4038 5.6019 -1.6994 20 6 4.8997 6.7883 -2.0719 21 7 4.2840 7.1517 -3.2103 22 6 3.4239 6.2273 -3.5513 23 6 2.5341 6.2590 -4.7672 24 7 3.4666 5.2447 -2.6353 25 6 2.6856 4.0063 -2.5913 26 1 -0.3633 0.4791 -0.9092 27 1 -0.3634 -1.0268 0.0397 28 1 -0.3634 0.5479 0.8694 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0637 2.8456 1.0778 32 1 2.8006 1.3135 1.9448 33 1 3.1349 3.0543 3.2965 34 1 4.2904 2.7790 0.2004 35 1 4.8144 2.8544 -1.4997 36 1 5.8457 4.7350 -0.3808 37 1 4.3083 5.1939 0.3967 38 1 5.6588 7.3526 -1.5507 39 1 1.5906 6.7426 -4.5143 40 1 3.0266 6.8171 -5.5634 41 1 2.3415 5.2401 -5.1031 42 1 3.0974 3.2889 -3.3011 43 1 1.6469 4.2171 -2.8455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593417443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:12 Heat of formation + Delta-G solvation = 11.783243 kcal Electronic energy + Delta-G solvation = -24398.502747 eV Core-core repulsion = 21058.150497 eV Total energy + Delta-G solvation = -3340.352250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24809 -39.73669 -36.17488 -35.62152 -33.21073 -33.03911 -31.48967 -30.27206 -29.47559 -26.83705 -26.28367 -24.74233 -23.21422 -22.68709 -21.83689 -20.65645 -18.93868 -18.46089 -17.31612 -16.91451 -16.32240 -15.73015 -15.22398 -14.86986 -14.36424 -13.95790 -13.88448 -13.71092 -13.66139 -13.46877 -13.02913 -12.90474 -12.75952 -12.63441 -12.35352 -12.04371 -11.88278 -11.76267 -11.73394 -11.41085 -11.04204 -10.92515 -10.86750 -10.60152 -10.31911 -10.24736 -9.77525 -9.41164 -9.34689 -9.18988 -8.58547 -8.01317 -7.87045 -6.60764 -4.37362 2.20580 2.84260 3.06100 3.27276 3.31792 3.32852 3.46578 3.65729 4.33635 4.50494 4.57036 4.72775 4.78236 4.94308 5.10074 5.13701 5.32110 5.35583 5.44263 5.50343 5.51254 5.56084 5.62456 5.75903 5.81164 5.86208 5.87303 5.93617 5.97550 6.08350 6.12406 6.24355 6.37917 6.47382 6.58151 6.66393 6.78878 6.93222 7.22034 7.37249 7.73761 7.95961 8.24560 8.26916 8.55862 8.66889 9.32741 10.75156 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.005679 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.815098 B = 4928.867370 C = 5871.988267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 N -0.585 5.585 4 C 0.212 3.788 5 C -0.617 4.617 6 H 0.058 0.942 7 C 0.026 3.974 8 N -0.903 5.903 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.527 3.473 14 O -0.571 6.571 15 C -0.116 4.116 16 H 0.116 0.884 17 C -0.121 4.121 18 C -0.045 4.045 19 C -0.018 4.018 20 C -0.029 4.029 21 N -0.497 5.497 22 C 0.201 3.799 23 C -0.066 4.066 24 N -0.448 5.448 25 C 0.126 3.874 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.168 0.832 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -0.186 -9.235 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.314 5.314 4 C 0.092 3.908 5 C -0.656 4.656 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.539 5.539 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.314 3.686 14 O -0.453 6.453 15 C -0.138 4.138 16 H 0.134 0.866 17 C -0.158 4.158 18 C -0.083 4.083 19 C -0.132 4.132 20 C -0.176 4.176 21 N -0.217 5.217 22 C -0.061 4.061 23 C -0.125 4.125 24 N -0.131 5.131 25 C 0.003 3.997 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.185 0.815 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.787 0.960 -8.883 9.112 hybrid contribution 0.288 -1.584 -0.578 1.711 sum 2.075 -0.624 -9.462 9.707 Atomic orbital electron populations 1.22131 0.96172 1.01009 1.03043 1.21218 0.94790 0.82676 1.01319 1.48012 1.62578 1.13367 1.07457 1.19888 0.97619 0.93170 0.80121 1.22364 0.94409 1.39948 1.08836 0.92338 1.25772 1.03119 0.94870 0.94221 1.70790 0.99022 1.43359 1.40692 0.83505 0.74048 0.76740 0.75880 1.21475 1.21106 1.21107 1.19954 0.78617 0.86548 0.83531 1.90612 1.52569 1.69623 1.32456 1.21458 0.98887 0.96425 0.96986 0.86607 1.21854 0.93024 0.97704 1.03262 1.20243 1.01632 0.92669 0.93730 1.21213 0.97116 0.99060 0.95840 1.21754 1.04379 0.95324 0.96193 1.70398 1.09934 1.26853 1.14501 1.23032 1.01289 0.86397 0.95355 1.20142 0.97232 1.03139 0.91942 1.45276 1.30419 1.17501 1.19933 1.21690 0.96439 0.83469 0.98088 0.92907 0.92940 0.90953 0.91642 0.90982 0.93678 0.95821 0.92116 0.88525 0.91541 0.89329 0.89111 0.81500 0.90334 0.89416 0.90929 0.88938 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.21 37.16 0.38 -2.45 16 2 C 0.12 2.15 6.08 -4.04 -0.02 2.13 16 3 N -0.58 -11.35 2.47 -175.06 -0.43 -11.78 16 4 C 0.21 4.55 3.79 -5.19 -0.02 4.53 16 5 C -0.62 -15.18 9.00 -34.44 -0.31 -15.49 16 6 H 0.06 1.50 6.73 -52.49 -0.35 1.14 16 7 C 0.03 0.66 5.46 -17.82 -0.10 0.56 16 8 N -0.90 -24.28 13.65 55.43 0.76 -23.52 16 9 Si 1.07 23.45 29.90 -169.99 -5.08 18.36 16 10 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.53 9.97 6.95 -10.98 -0.08 9.90 16 14 O -0.57 -11.65 15.50 5.56 0.09 -11.56 16 15 C -0.12 -1.94 1.69 -91.58 -0.15 -2.09 16 16 H 0.12 2.19 7.72 -51.93 -0.40 1.78 16 17 C -0.12 -1.80 4.69 -26.40 -0.12 -1.93 16 18 C -0.04 -0.62 6.31 -27.61 -0.17 -0.80 16 19 C -0.02 -0.28 6.57 -81.73 -0.54 -0.81 16 20 C -0.03 -0.46 11.84 -17.95 -0.21 -0.67 16 21 N -0.50 -8.40 11.27 -11.02 -0.12 -8.53 16 22 C 0.20 3.08 7.94 -155.75 -1.24 1.84 16 23 C -0.07 -0.73 10.24 36.01 0.37 -0.36 16 24 N -0.45 -6.96 3.13 -109.45 -0.34 -7.31 16 25 C 0.13 1.90 5.37 -3.93 -0.02 1.88 16 26 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.38 6.64 -51.93 -0.34 1.04 16 29 H 0.07 1.10 7.63 -51.93 -0.40 0.70 16 30 H 0.07 1.19 7.91 -51.93 -0.41 0.77 16 31 H 0.05 0.95 3.94 -51.93 -0.20 0.74 16 32 H 0.02 0.53 7.83 -51.93 -0.41 0.13 16 33 H 0.27 7.01 7.22 -40.82 -0.29 6.72 16 34 H 0.10 1.52 5.35 -51.93 -0.28 1.24 16 35 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.70 7.95 -51.93 -0.41 0.29 16 42 H 0.09 1.38 7.73 -51.93 -0.40 0.98 16 43 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -29.53 343.21 -8.71 -38.24 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.50 Total: 4.69 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.24 Total: -3.77 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.14 Total: -51.13 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.53 -8.71 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.028 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds