Wall clock time and date at job start Tue Mar 31 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47191 * 2 1 4 4 C 1.46501 * 120.00097 * 94.40770 * 3 2 1 5 5 C 1.50700 * 109.47361 * 276.29950 * 4 3 2 6 6 H 1.08001 * 119.99770 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99799 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99622 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47266 * 239.99854 * 9 7 5 12 12 H 1.48510 * 109.46801 * 120.00207 * 9 7 5 13 13 C 1.34781 * 119.99888 * 274.40919 * 3 2 1 14 14 O 1.21278 * 120.00019 * 4.80092 * 13 3 2 15 15 C 1.50702 * 119.99938 * 184.79872 * 13 3 2 16 16 H 1.08994 * 109.43334 * 305.11213 * 15 13 3 17 17 C 1.53121 * 109.42826 * 65.01422 * 15 13 3 18 18 C 1.53518 * 109.29487 * 190.02340 * 17 15 13 19 19 C 1.50711 * 108.02268 * 311.20637 * 18 17 15 20 20 C 1.33862 * 128.67767 * 195.85949 * 19 18 17 21 21 N 1.34430 * 107.79273 * 179.88532 * 20 19 18 22 22 C 1.30785 * 109.32366 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.72085 * 180.02562 * 22 21 20 24 24 N 1.34408 * 108.55135 * 0.04277 * 22 21 20 25 25 C 1.46472 * 128.43893 * 179.87001 * 24 22 21 26 26 H 1.09009 * 109.47036 * 62.21450 * 1 2 3 27 27 H 1.08998 * 109.47757 * 182.21232 * 1 2 3 28 28 H 1.09001 * 109.47470 * 302.21870 * 1 2 3 29 29 H 1.09001 * 109.47071 * 239.99447 * 2 1 3 30 30 H 1.09006 * 109.46649 * 119.99539 * 2 1 3 31 31 H 1.08999 * 109.46788 * 156.29983 * 4 3 2 32 32 H 1.08994 * 109.47219 * 36.30286 * 4 3 2 33 33 H 0.96999 * 120.00147 * 359.97438 * 8 7 5 34 34 H 1.08999 * 109.49680 * 309.92802 * 17 15 13 35 35 H 1.09001 * 109.49431 * 70.02555 * 17 15 13 36 36 H 1.08999 * 109.73065 * 191.59623 * 18 17 15 37 37 H 1.08995 * 109.82642 * 70.87990 * 18 17 15 38 38 H 1.07993 * 126.09861 * 359.88497 * 20 19 18 39 39 H 1.08996 * 109.46936 * 269.95828 * 23 22 21 40 40 H 1.09000 * 109.47086 * 29.95993 * 23 22 21 41 41 H 1.09001 * 109.47000 * 149.95824 * 23 22 21 42 42 H 1.08999 * 109.59884 * 77.54341 * 25 24 22 43 43 H 1.08993 * 109.73377 * 317.14813 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3545 2.0393 1.2650 5 6 1.1029 2.6051 1.8850 6 1 0.1522 2.4866 1.3864 7 6 1.1715 3.2738 3.0888 8 7 2.3292 3.4184 3.6956 9 14 -0.3798 3.9757 3.8569 10 1 -1.5428 3.6807 2.9818 11 1 -0.2351 5.4457 4.0099 12 1 -0.5950 3.3581 5.1903 13 6 2.1584 2.0464 -1.1638 14 8 1.7987 1.5338 -2.2024 15 6 2.7619 3.4273 -1.1745 16 1 2.2081 4.0703 -0.4905 17 6 4.2242 3.3475 -0.7273 18 6 4.7624 4.7667 -0.4973 19 6 4.4038 5.6019 -1.6994 20 6 4.8997 6.7883 -2.0719 21 7 4.2840 7.1517 -3.2103 22 6 3.4239 6.2273 -3.5513 23 6 2.5341 6.2590 -4.7672 24 7 3.4666 5.2447 -2.6353 25 6 2.6856 4.0063 -2.5913 26 1 -0.3633 0.4791 -0.9092 27 1 -0.3634 -1.0268 0.0397 28 1 -0.3634 0.5479 0.8694 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0637 2.8456 1.0778 32 1 2.8006 1.3135 1.9448 33 1 3.1349 3.0543 3.2965 34 1 4.2904 2.7790 0.2004 35 1 4.8144 2.8544 -1.4997 36 1 5.8457 4.7350 -0.3808 37 1 4.3083 5.1939 0.3967 38 1 5.6588 7.3526 -1.5507 39 1 1.5906 6.7426 -4.5143 40 1 3.0266 6.8171 -5.5634 41 1 2.3415 5.2401 -5.1031 42 1 3.0974 3.2889 -3.3011 43 1 1.6469 4.2171 -2.8455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593417443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:11 Heat of formation + Delta-G solvation = -3.345580 kcal Electronic energy + Delta-G solvation = -24399.158782 eV Core-core repulsion = 21058.150497 eV Total energy + Delta-G solvation = -3341.008285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.43508 -41.23386 -37.47608 -37.23618 -34.89038 -34.37257 -32.78939 -31.51157 -30.72847 -28.62540 -27.42004 -26.06447 -24.98660 -24.06171 -23.12643 -21.85242 -20.28299 -19.87830 -19.12370 -18.31850 -17.54610 -17.15507 -16.62355 -16.34020 -15.74950 -15.57899 -15.21895 -15.05224 -14.93524 -14.73106 -14.47959 -14.21465 -13.99503 -13.83138 -13.62237 -13.48409 -13.32366 -13.18691 -12.93056 -12.76996 -12.57861 -12.53954 -12.21135 -12.01023 -11.94315 -11.78941 -11.16119 -10.98572 -10.83720 -10.54491 -10.48559 -9.54173 -9.17734 -8.60746 -6.38354 1.03371 1.49200 1.54846 1.58526 1.67205 1.74705 2.08493 2.20999 2.52997 3.14314 3.23581 3.36108 3.51193 3.58094 3.74188 3.92006 4.09690 4.14707 4.22797 4.26016 4.34230 4.35972 4.48723 4.54574 4.59222 4.63360 4.68526 4.73739 4.79366 4.84640 4.88556 4.97206 4.97509 5.03516 5.08179 5.31971 5.40848 5.63410 5.77453 5.85016 6.13081 6.22233 6.48194 6.61400 7.06724 7.10797 7.37354 8.75215 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.005679 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.815098 B = 4928.867370 C = 5871.988267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.116 3.884 3 N -0.589 5.589 4 C 0.222 3.778 5 C -0.617 4.617 6 H 0.045 0.955 7 C -0.015 4.015 8 N -0.927 5.927 9 Si 1.106 2.894 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.279 1.279 13 C 0.525 3.475 14 O -0.584 6.584 15 C -0.110 4.110 16 H 0.092 0.908 17 C -0.114 4.114 18 C -0.037 4.037 19 C -0.032 4.032 20 C -0.040 4.040 21 N -0.526 5.526 22 C 0.196 3.804 23 C -0.066 4.066 24 N -0.454 5.454 25 C 0.134 3.866 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.186 0.814 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -0.408 -10.013 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.007 4.007 3 N -0.318 5.318 4 C 0.101 3.899 5 C -0.655 4.655 6 H 0.063 0.937 7 C -0.216 4.216 8 N -0.564 5.564 9 Si 0.930 3.070 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.205 1.205 13 C 0.313 3.687 14 O -0.466 6.466 15 C -0.132 4.132 16 H 0.110 0.890 17 C -0.152 4.152 18 C -0.075 4.075 19 C -0.146 4.146 20 C -0.187 4.187 21 N -0.246 5.246 22 C -0.066 4.066 23 C -0.124 4.124 24 N -0.138 5.138 25 C 0.012 3.988 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.203 0.797 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.668 0.725 -9.670 9.840 hybrid contribution 0.318 -1.549 -0.392 1.629 sum 1.985 -0.824 -10.062 10.289 Atomic orbital electron populations 1.22033 0.95836 1.02472 1.01086 1.21415 0.95061 0.81888 1.02315 1.48036 1.62778 1.14135 1.06884 1.19649 0.96455 0.93102 0.80683 1.22557 0.94951 1.39353 1.08651 0.93656 1.26776 1.04557 0.95202 0.95021 1.70870 0.99399 1.44797 1.41349 0.83027 0.71964 0.76351 0.75679 1.20592 1.20848 1.20487 1.20270 0.78203 0.87148 0.83097 1.90598 1.53113 1.70208 1.32698 1.21369 0.99495 0.94623 0.97671 0.88970 1.21791 0.91986 0.98371 1.03008 1.20222 1.03078 0.91531 0.92654 1.21455 0.97385 0.99436 0.96329 1.22155 1.04759 0.95610 0.96135 1.70417 1.11054 1.27815 1.15333 1.23819 1.01043 0.85692 0.96001 1.20323 0.96999 1.04470 0.90628 1.45373 1.30505 1.17654 1.20227 1.21598 0.96821 0.83486 0.96920 0.94238 0.89793 0.93336 0.90576 0.90015 0.92921 0.96697 0.92619 0.89424 0.90422 0.86752 0.90373 0.79690 0.89215 0.88228 0.89469 0.88399 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.21 71.98 0.73 -4.44 16 2 C 0.12 3.91 6.08 86.38 0.52 4.44 16 3 N -0.59 -22.56 2.47 -826.16 -2.04 -24.60 16 4 C 0.22 9.53 3.79 85.63 0.32 9.85 16 5 C -0.62 -30.39 9.00 25.60 0.23 -30.16 16 6 H 0.05 2.33 6.73 -2.91 -0.02 2.31 16 7 C -0.01 -0.75 5.46 84.65 0.46 -0.29 16 8 N -0.93 -49.92 13.65 21.45 0.29 -49.63 16 9 Si 1.11 46.91 29.90 68.60 2.05 48.96 16 10 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.52 19.52 6.95 87.66 0.61 20.12 16 14 O -0.58 -23.15 15.50 -3.02 -0.05 -23.19 16 15 C -0.11 -3.62 1.69 -11.42 -0.02 -3.64 16 16 H 0.09 3.51 7.72 -2.39 -0.02 3.49 16 17 C -0.11 -3.30 4.69 30.81 0.14 -3.15 16 18 C -0.04 -0.99 6.31 30.03 0.19 -0.80 16 19 C -0.03 -0.96 6.57 40.73 0.27 -0.69 16 20 C -0.04 -1.22 11.84 83.30 0.99 -0.24 16 21 N -0.53 -17.23 11.27 -188.78 -2.13 -19.36 16 22 C 0.20 5.74 7.94 138.25 1.10 6.84 16 23 C -0.07 -1.32 10.24 71.24 0.73 -0.59 16 24 N -0.45 -13.58 3.13 -500.20 -1.57 -15.15 16 25 C 0.13 3.90 5.37 86.47 0.46 4.36 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.83 6.64 -2.39 -0.02 1.81 16 29 H 0.08 2.43 7.63 -2.39 -0.02 2.41 16 30 H 0.08 2.59 7.91 -2.38 -0.02 2.57 16 31 H 0.05 2.22 3.94 -2.39 -0.01 2.21 16 32 H 0.02 0.68 7.83 -2.39 -0.02 0.66 16 33 H 0.26 13.90 7.22 -92.71 -0.67 13.23 16 34 H 0.09 2.71 5.35 -2.39 -0.01 2.69 16 35 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.46 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.19 4.65 8.06 -2.91 -0.02 4.62 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.09 1.48 7.95 -2.39 -0.02 1.47 16 42 H 0.10 2.76 7.73 -2.39 -0.02 2.74 16 43 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -61.76 343.21 4.42 -57.34 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.10 Total: 24.01 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.75 Total: 1.62 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -5.44 Total: -108.74 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.05 Total: 48.96 kcal Total: -61.76 4.42 -57.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593417443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.999 kcal (2) G-P(sol) polarization free energy of solvation -61.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds