Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47489 * 2 1 4 4 C 1.34947 * 126.03485 * 124.97113 * 3 2 1 5 5 C 1.35325 * 107.73982 * 179.75510 * 4 3 2 6 6 C 1.39863 * 107.92169 * 0.39652 * 5 4 3 7 7 C 1.50699 * 125.89805 * 179.86723 * 6 5 4 8 8 C 1.50703 * 109.47310 * 124.71335 * 7 6 5 9 9 O 1.21281 * 119.99837 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00021 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99786 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46992 * 90.00095 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46504 * 119.99832 * 0.02562 * 10 8 7 21 21 C 1.53002 * 109.46810 * 269.99624 * 20 10 8 22 22 C 1.53002 * 117.49875 * 243.62335 * 21 20 10 23 23 C 1.52999 * 117.49621 * 175.00094 * 21 20 10 24 24 N 1.30835 * 108.20441 * 359.59834 * 6 5 4 25 25 H 1.09002 * 109.47111 * 299.99851 * 1 2 3 26 26 H 1.09002 * 109.47050 * 59.99673 * 1 2 3 27 27 H 1.09001 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46780 * 239.99744 * 2 1 3 29 29 H 1.09002 * 109.47050 * 120.00327 * 2 1 3 30 30 H 1.07993 * 126.13208 * 0.02562 * 4 3 2 31 31 H 1.08007 * 126.03511 * 180.27659 * 5 4 3 32 32 H 1.09000 * 109.47002 * 4.71405 * 7 6 5 33 33 H 1.08999 * 109.47419 * 244.71133 * 7 6 5 34 34 H 1.09002 * 109.47391 * 330.00086 * 11 10 8 35 35 H 1.09001 * 109.46813 * 210.00142 * 11 10 8 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08992 * 109.47334 * 29.99480 * 20 10 8 38 38 H 1.08994 * 109.46680 * 150.00103 * 20 10 8 39 39 H 1.09004 * 115.54776 * 29.33368 * 21 20 10 40 40 H 1.09001 * 117.49844 * 0.02562 * 22 21 20 41 41 H 1.09006 * 117.49553 * 145.02358 * 22 21 20 42 42 H 1.09003 * 117.49630 * 214.97900 * 23 21 20 43 43 H 1.08991 * 117.50023 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0758 3.2121 0.5430 6 6 2.3126 3.4723 -0.5998 7 6 2.2362 4.7880 -1.3306 8 6 2.5938 4.5794 -2.7796 9 8 2.8819 3.4713 -3.1796 10 7 2.5925 5.6241 -3.6312 11 6 2.9407 5.4213 -5.0397 12 6 1.6940 5.1039 -5.8247 13 1 0.7380 5.0583 -5.3245 14 6 1.7739 4.8728 -7.1816 15 7 2.9381 4.9289 -7.7908 16 14 0.2285 4.4802 -8.1547 17 1 -0.7296 5.6089 -8.0388 18 1 0.5814 4.2745 -9.5824 19 1 -0.3949 3.2445 -7.6164 20 6 2.2441 6.9625 -3.1481 21 6 0.7355 7.1776 -3.2857 22 6 0.2627 8.2781 -4.2377 23 6 0.1530 8.4763 -2.7245 24 7 1.6809 2.3746 -0.9282 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3183 1.4127 1.7364 31 1 3.7130 3.9174 1.0558 32 1 2.9351 5.4940 -0.8819 33 1 1.2234 5.1847 -1.2598 34 1 3.6442 4.5930 -5.1245 35 1 3.3980 6.3283 -5.4351 36 1 2.9943 4.7660 -8.7454 37 1 2.5304 7.0567 -2.1007 38 1 2.7730 7.7108 -3.7382 39 1 0.1238 6.2784 -3.2119 40 1 1.0263 8.8486 -4.7663 41 1 -0.6603 8.1029 -4.7905 42 1 -0.8421 8.4316 -2.2819 43 1 0.8445 9.1776 -2.2578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593450862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = 67.437921 kcal Electronic energy + Delta-G solvation = -23417.889113 eV Core-core repulsion = 20079.950231 eV Total energy + Delta-G solvation = -3337.938882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98881 -38.93121 -36.93024 -34.64863 -34.14187 -32.50083 -31.34462 -29.57405 -28.43348 -27.23792 -25.78091 -23.49123 -22.43516 -21.97110 -20.94625 -20.50051 -19.66080 -18.14823 -16.90753 -16.40642 -16.21253 -15.52708 -15.19641 -14.74971 -14.56859 -14.29826 -14.15490 -13.78530 -13.38612 -13.17676 -12.55850 -12.47766 -12.28184 -12.21977 -12.16328 -11.98729 -11.59665 -11.38209 -11.22424 -11.12940 -11.09109 -10.84767 -10.52489 -10.20468 -10.20017 -9.87955 -9.52207 -9.44206 -9.03546 -8.71382 -8.32563 -8.32053 -7.55048 -5.93548 -3.95678 2.14374 2.67587 3.01850 3.37827 3.41909 3.44903 3.57296 4.04147 4.28968 4.47701 4.54016 4.84839 4.89320 4.99843 5.08698 5.13402 5.26680 5.29069 5.40082 5.41139 5.50477 5.55829 5.67608 5.76134 5.80872 5.84914 5.90397 5.97163 6.00208 6.04794 6.15148 6.25353 6.33365 6.48111 6.68916 6.86708 7.18349 7.22150 7.55204 7.68003 8.03692 8.04418 8.36497 8.54015 9.03536 9.25207 9.68041 11.14948 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.004836 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.899622 B = 5788.402646 C = 6838.813977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.377 5.377 4 C 0.042 3.958 5 C -0.268 4.268 6 C 0.088 3.912 7 C -0.061 4.061 8 C 0.509 3.491 9 O -0.524 6.524 10 N -0.598 5.598 11 C 0.249 3.751 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.146 3.854 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.190 4.190 24 N -0.253 5.253 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -0.209 18.984 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.160 5.160 4 C -0.103 4.103 5 C -0.298 4.298 6 C -0.080 4.080 7 C -0.103 4.103 8 C 0.294 3.706 9 O -0.399 6.399 10 N -0.330 5.330 11 C 0.130 3.870 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C 0.021 3.979 21 C -0.174 4.174 22 C -0.201 4.201 23 C -0.228 4.228 24 N -0.074 5.074 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.185 0.815 31 H 0.162 0.838 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.072 -1.564 17.745 18.077 hybrid contribution -0.333 0.150 -0.091 0.376 sum -3.405 -1.414 17.655 18.036 Atomic orbital electron populations 1.22047 0.93985 1.02572 1.03657 1.21606 0.95981 0.77906 1.03414 1.48764 1.35974 1.10199 1.21039 1.22414 0.96454 0.94907 0.96525 1.21308 1.09639 0.96828 1.02005 1.21667 0.96907 0.94401 0.95002 1.20154 1.04148 0.92451 0.93581 1.20050 0.78741 0.84993 0.86793 1.90707 1.47521 1.23432 1.78245 1.48180 1.66950 1.06195 1.11722 1.19242 0.96512 0.97502 0.73740 1.21373 0.93933 1.47088 0.92623 0.92488 1.24900 0.96010 0.95583 0.97673 1.69923 1.23496 1.50274 1.10170 0.86635 0.83498 0.78918 0.78815 1.20325 1.21340 1.20351 1.21005 0.92360 0.85815 0.98722 1.22770 0.97152 0.93103 1.04385 1.22869 1.03154 1.02429 0.91606 1.22965 1.01888 1.00600 0.97359 1.77507 1.23242 0.96135 1.10553 0.92325 0.90801 0.90976 0.89825 0.89078 0.81477 0.83829 0.87904 0.87956 0.94083 0.95252 0.92895 0.91317 0.90606 0.87845 0.88798 0.89318 0.89455 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.10 37.16 0.38 -1.28 16 2 C 0.13 1.40 7.23 -4.05 -0.03 1.38 16 3 N -0.38 -5.55 3.68 -61.37 -0.23 -5.77 16 4 C 0.04 0.53 11.45 -17.22 -0.20 0.33 16 5 C -0.27 -3.74 10.72 -40.01 -0.43 -4.17 16 6 C 0.09 1.52 6.02 -82.41 -0.50 1.03 16 7 C -0.06 -0.99 4.83 -29.03 -0.14 -1.13 16 8 C 0.51 11.07 7.66 -10.98 -0.08 10.99 16 9 O -0.52 -14.05 15.14 5.56 0.08 -13.97 16 10 N -0.60 -12.83 2.46 -175.06 -0.43 -13.26 16 11 C 0.25 6.63 5.20 -5.19 -0.03 6.60 16 12 C -0.51 -14.68 9.39 -34.44 -0.32 -15.00 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 16 Si 0.89 22.55 29.54 -169.99 -5.02 17.52 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 C 0.15 2.36 5.54 -4.04 -0.02 2.34 16 21 C -0.15 -2.46 5.94 -90.62 -0.54 -3.00 16 22 C -0.16 -2.51 10.18 -26.73 -0.27 -2.78 16 23 C -0.19 -2.38 10.25 -26.73 -0.27 -2.65 16 24 N -0.25 -4.81 11.76 33.67 0.40 -4.42 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 30 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.10 1.29 7.38 -51.93 -0.38 0.91 16 33 H 0.10 1.50 8.03 -51.93 -0.42 1.09 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 38 H 0.08 1.21 7.63 -51.93 -0.40 0.82 16 39 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.09 1.43 8.03 -51.93 -0.42 1.02 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -36.88 365.41 -8.44 -45.32 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.93 Total: 1.35 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.55 Total: -5.73 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.48 Total: -50.01 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.88 -8.44 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593450862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.757 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds