Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47489 * 2 1 4 4 C 1.34947 * 126.03485 * 124.97113 * 3 2 1 5 5 C 1.35325 * 107.73982 * 179.75510 * 4 3 2 6 6 C 1.39863 * 107.92169 * 0.39652 * 5 4 3 7 7 C 1.50699 * 125.89805 * 179.86723 * 6 5 4 8 8 C 1.50703 * 109.47310 * 124.71335 * 7 6 5 9 9 O 1.21281 * 119.99837 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00021 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99786 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46992 * 90.00095 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46504 * 119.99832 * 0.02562 * 10 8 7 21 21 C 1.53002 * 109.46810 * 269.99624 * 20 10 8 22 22 C 1.53002 * 117.49875 * 243.62335 * 21 20 10 23 23 C 1.52999 * 117.49621 * 175.00094 * 21 20 10 24 24 N 1.30835 * 108.20441 * 359.59834 * 6 5 4 25 25 H 1.09002 * 109.47111 * 299.99851 * 1 2 3 26 26 H 1.09002 * 109.47050 * 59.99673 * 1 2 3 27 27 H 1.09001 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46780 * 239.99744 * 2 1 3 29 29 H 1.09002 * 109.47050 * 120.00327 * 2 1 3 30 30 H 1.07993 * 126.13208 * 0.02562 * 4 3 2 31 31 H 1.08007 * 126.03511 * 180.27659 * 5 4 3 32 32 H 1.09000 * 109.47002 * 4.71405 * 7 6 5 33 33 H 1.08999 * 109.47419 * 244.71133 * 7 6 5 34 34 H 1.09002 * 109.47391 * 330.00086 * 11 10 8 35 35 H 1.09001 * 109.46813 * 210.00142 * 11 10 8 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08992 * 109.47334 * 29.99480 * 20 10 8 38 38 H 1.08994 * 109.46680 * 150.00103 * 20 10 8 39 39 H 1.09004 * 115.54776 * 29.33368 * 21 20 10 40 40 H 1.09001 * 117.49844 * 0.02562 * 22 21 20 41 41 H 1.09006 * 117.49553 * 145.02358 * 22 21 20 42 42 H 1.09003 * 117.49630 * 214.97900 * 23 21 20 43 43 H 1.08991 * 117.50023 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0758 3.2121 0.5430 6 6 2.3126 3.4723 -0.5998 7 6 2.2362 4.7880 -1.3306 8 6 2.5938 4.5794 -2.7796 9 8 2.8819 3.4713 -3.1796 10 7 2.5925 5.6241 -3.6312 11 6 2.9407 5.4213 -5.0397 12 6 1.6940 5.1039 -5.8247 13 1 0.7380 5.0583 -5.3245 14 6 1.7739 4.8728 -7.1816 15 7 2.9381 4.9289 -7.7908 16 14 0.2285 4.4802 -8.1547 17 1 -0.7296 5.6089 -8.0388 18 1 0.5814 4.2745 -9.5824 19 1 -0.3949 3.2445 -7.6164 20 6 2.2441 6.9625 -3.1481 21 6 0.7355 7.1776 -3.2857 22 6 0.2627 8.2781 -4.2377 23 6 0.1530 8.4763 -2.7245 24 7 1.6809 2.3746 -0.9282 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3183 1.4127 1.7364 31 1 3.7130 3.9174 1.0558 32 1 2.9351 5.4940 -0.8819 33 1 1.2234 5.1847 -1.2598 34 1 3.6442 4.5930 -5.1245 35 1 3.3980 6.3283 -5.4351 36 1 2.9943 4.7660 -8.7454 37 1 2.5304 7.0567 -2.1007 38 1 2.7730 7.7108 -3.7382 39 1 0.1238 6.2784 -3.2119 40 1 1.0263 8.8486 -4.7663 41 1 -0.6603 8.1029 -4.7905 42 1 -0.8421 8.4316 -2.2819 43 1 0.8445 9.1776 -2.2578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593450862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = 43.512441 kcal Electronic energy + Delta-G solvation = -23418.926599 eV Core-core repulsion = 20079.950231 eV Total energy + Delta-G solvation = -3338.976368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.07941 -40.56528 -38.27438 -36.06552 -35.51091 -34.59331 -32.56558 -30.74600 -29.97015 -28.68022 -27.42143 -25.05906 -23.86781 -23.08048 -21.95435 -21.82753 -20.92869 -19.63936 -18.61374 -17.95053 -17.76626 -17.13262 -16.42323 -16.31462 -16.00455 -15.83948 -15.16675 -14.98418 -14.65174 -14.40648 -14.22071 -14.01452 -13.69303 -13.54442 -13.24571 -13.19331 -13.00553 -12.92219 -12.79366 -12.61359 -12.50024 -12.22682 -12.22406 -12.19860 -11.62768 -11.31911 -11.18990 -10.74705 -10.60634 -10.49287 -10.10462 -9.39727 -9.36398 -8.19300 -6.30474 1.10411 1.31816 1.36342 1.43098 1.74469 1.86665 1.91177 2.36172 2.53984 3.08131 3.10274 3.55351 3.80006 3.92312 4.02422 4.06576 4.10294 4.17573 4.29007 4.33681 4.35378 4.55261 4.56003 4.67516 4.71388 4.79989 4.88488 4.92031 4.93737 4.99131 5.06282 5.16170 5.17192 5.24952 5.28606 5.38561 5.41808 5.62858 5.78544 5.91919 6.12635 6.32760 6.75268 6.85505 6.94182 7.33418 7.57794 8.87912 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.004836 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.899622 B = 5788.402646 C = 6838.813977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 N -0.383 5.383 4 C 0.054 3.946 5 C -0.281 4.281 6 C 0.062 3.938 7 C -0.046 4.046 8 C 0.500 3.500 9 O -0.587 6.587 10 N -0.601 5.601 11 C 0.265 3.735 12 C -0.520 4.520 13 H 0.048 0.952 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.957 3.043 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.284 1.284 20 C 0.142 3.858 21 C -0.176 4.176 22 C -0.188 4.188 23 C -0.142 4.142 24 N -0.321 5.321 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.218 0.782 31 H 0.174 0.826 32 H 0.146 0.854 33 H 0.117 0.883 34 H -0.008 1.008 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 0.708 22.075 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 N -0.167 5.167 4 C -0.091 4.091 5 C -0.310 4.310 6 C -0.104 4.104 7 C -0.087 4.087 8 C 0.289 3.711 9 O -0.467 6.467 10 N -0.332 5.332 11 C 0.144 3.856 12 C -0.559 4.559 13 H 0.066 0.934 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.782 3.218 17 H -0.185 1.185 18 H -0.202 1.202 19 H -0.210 1.210 20 C 0.020 3.980 21 C -0.196 4.196 22 C -0.225 4.225 23 C -0.179 4.179 24 N -0.144 5.144 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.235 0.765 31 H 0.191 0.809 32 H 0.164 0.836 33 H 0.135 0.865 34 H 0.010 0.990 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.712 -0.593 20.862 21.198 hybrid contribution -0.114 -0.192 -1.012 1.036 sum -3.826 -0.785 19.850 20.231 Atomic orbital electron populations 1.21983 0.93880 1.03813 1.01843 1.21976 0.96225 0.76542 1.05063 1.49088 1.36245 1.10717 1.20623 1.23242 0.94648 0.94659 0.96591 1.21718 1.09795 0.98238 1.01282 1.22007 0.97793 0.94305 0.96340 1.20152 1.05895 0.93614 0.89059 1.21099 0.77151 0.83853 0.89045 1.90666 1.50281 1.25959 1.79804 1.48162 1.66613 1.08685 1.09698 1.18675 0.94752 0.95071 0.77102 1.21568 0.94132 1.47031 0.93185 0.93374 1.25752 0.99195 0.95359 0.98805 1.70039 1.25502 1.51021 1.10571 0.85628 0.79856 0.78731 0.77558 1.18493 1.20198 1.21010 1.21347 0.92768 0.82774 1.01132 1.22609 0.96528 0.93524 1.06922 1.22920 1.02735 1.02952 0.93866 1.23059 1.02854 0.97422 0.94539 1.77397 1.25720 0.97952 1.13326 0.91892 0.94718 0.88178 0.91190 0.84302 0.76522 0.80898 0.83588 0.86504 0.99014 0.95945 0.92645 0.86698 0.90441 0.90544 0.89082 0.90517 0.87837 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.10 71.98 0.73 -2.36 16 2 C 0.12 2.44 7.23 86.38 0.62 3.06 16 3 N -0.38 -10.94 3.68 -348.07 -1.28 -12.22 16 4 C 0.05 1.20 11.45 83.54 0.96 2.15 16 5 C -0.28 -7.17 10.72 21.99 0.24 -6.93 16 6 C 0.06 2.12 6.02 43.10 0.26 2.38 16 7 C -0.05 -1.44 4.83 29.10 0.14 -1.30 16 8 C 0.50 22.42 7.66 87.66 0.67 23.10 16 9 O -0.59 -33.47 15.14 -3.03 -0.05 -33.52 16 10 N -0.60 -26.48 2.46 -826.15 -2.03 -28.50 16 11 C 0.27 14.92 5.20 85.63 0.45 15.36 16 12 C -0.52 -31.21 9.39 25.60 0.24 -30.97 16 13 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 14 C 0.01 0.42 5.46 84.66 0.46 0.89 16 15 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 16 Si 0.96 47.39 29.54 68.60 2.03 49.41 16 17 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 20 C 0.14 4.44 5.54 86.38 0.48 4.92 16 21 C -0.18 -5.44 5.94 -10.79 -0.06 -5.50 16 22 C -0.19 -5.61 10.18 30.60 0.31 -5.30 16 23 C -0.14 -3.05 10.25 30.60 0.31 -2.74 16 24 N -0.32 -12.52 11.76 -47.39 -0.56 -13.07 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.14 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.15 3.17 7.38 -2.39 -0.02 3.15 16 33 H 0.12 3.28 8.03 -2.39 -0.02 3.26 16 34 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 35 H 0.02 1.27 7.89 -2.39 -0.02 1.25 16 36 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 37 H 0.12 2.51 6.44 -2.39 -0.02 2.49 16 38 H 0.08 2.39 7.63 -2.39 -0.02 2.38 16 39 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.09 2.74 8.03 -2.39 -0.02 2.72 16 41 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -88.60 365.41 5.18 -83.42 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.98 Total: 15.88 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.80 Total: -3.25 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.58 Total: -111.94 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.05 Total: -33.52 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -88.60 5.18 -83.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593450862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.931 kcal (2) G-P(sol) polarization free energy of solvation -88.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds