Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46510 * 109.46985 * 2 1 4 4 C 1.34949 * 126.03389 * 124.99783 * 3 2 1 5 5 C 1.35317 * 107.73956 * 180.02562 * 4 3 2 6 6 C 1.39860 * 107.92487 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.89944 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 124.99977 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63059 * 359.72315 * 10 8 7 12 12 C 1.52760 * 109.00903 * 233.58159 * 11 10 8 13 13 C 1.53040 * 109.38219 * 305.58856 * 12 11 10 14 14 C 1.50698 * 109.45162 * 181.25116 * 13 12 11 15 15 H 1.07997 * 120.00517 * 239.94623 * 14 13 12 16 16 C 1.37880 * 119.99723 * 59.93708 * 14 13 12 17 17 N 1.31520 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46814 * 90.00460 * 18 16 14 20 20 H 1.48497 * 109.47362 * 210.00048 * 18 16 14 21 21 H 1.48492 * 109.47376 * 330.00719 * 18 16 14 22 22 C 1.53042 * 109.53627 * 61.23932 * 13 12 11 23 23 C 1.46926 * 120.62707 * 180.02562 * 10 8 7 24 24 N 1.30841 * 108.20548 * 0.26517 * 6 5 4 25 25 H 1.09006 * 109.47196 * 60.00232 * 1 2 3 26 26 H 1.09002 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47468 * 299.99953 * 1 2 3 28 28 H 1.09000 * 109.47468 * 240.00047 * 2 1 3 29 29 H 1.08997 * 109.47424 * 119.99792 * 2 1 3 30 30 H 1.07996 * 126.12671 * 359.96615 * 4 3 2 31 31 H 1.08009 * 126.03377 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47152 * 5.00070 * 7 6 5 33 33 H 1.09001 * 109.46980 * 245.00171 * 7 6 5 34 34 H 1.08996 * 109.58649 * 353.41979 * 11 10 8 35 35 H 1.09004 * 109.58204 * 113.84425 * 11 10 8 36 36 H 1.09000 * 109.56394 * 185.56047 * 12 11 10 37 37 H 1.09001 * 109.38512 * 65.51568 * 12 11 10 38 38 H 1.09001 * 109.46468 * 301.22386 * 13 12 11 39 39 H 0.97002 * 119.99615 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.49904 * 178.67973 * 22 13 12 41 41 H 1.09000 * 109.52420 * 58.60476 * 22 13 12 42 42 H 1.09005 * 109.58410 * 246.15856 * 23 10 8 43 43 H 1.09001 * 109.58875 * 6.43498 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8940 5 6 3.0711 3.2138 0.5463 6 6 2.3120 3.4726 -0.5995 7 6 2.2341 4.7889 -1.3292 8 6 2.5920 4.5818 -2.7784 9 8 2.8812 3.4743 -3.1792 10 7 2.5895 5.6271 -3.6291 11 6 2.2343 6.9733 -3.1599 12 6 1.1191 7.5300 -4.0432 13 6 1.5543 7.4694 -5.5091 14 6 0.4677 8.0465 -6.3794 15 1 0.0043 7.4364 -7.1406 16 6 0.0651 9.3535 -6.2037 17 7 0.6297 10.0965 -5.2770 18 14 -1.2812 10.0691 -7.2829 19 1 -2.6022 9.8377 -6.6451 20 1 -1.0601 11.5283 -7.4479 21 1 -1.2517 9.4104 -8.6134 22 6 1.8077 6.0138 -5.9080 23 6 2.9356 5.4408 -5.0449 24 7 1.6762 2.3763 -0.9249 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3182 1.4128 1.7364 31 1 3.7037 3.9208 1.0626 32 1 2.9322 5.4953 -0.8799 33 1 1.2209 5.1843 -1.2580 34 1 1.8891 6.9211 -2.1274 35 1 3.1063 7.6243 -3.2234 36 1 0.9164 8.5646 -3.7664 37 1 0.2173 6.9332 -3.9064 38 1 2.4697 8.0464 -5.6405 39 1 0.3467 11.0161 -5.1537 40 1 2.0949 5.9691 -6.9587 41 1 0.8998 5.4305 -5.7541 42 1 3.8660 5.9641 -5.2654 43 1 3.0555 4.3780 -5.2550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593594134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = 32.505879 kcal Electronic energy + Delta-G solvation = -23210.834121 eV Core-core repulsion = 19871.380472 eV Total energy + Delta-G solvation = -3339.453649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17611 -39.44718 -36.73495 -34.73465 -33.45753 -31.96210 -30.94126 -30.04954 -29.64201 -28.05453 -26.00902 -23.60933 -22.78015 -22.19519 -21.11174 -20.36115 -19.26893 -18.09963 -17.07027 -16.82114 -16.08825 -15.43178 -15.27269 -15.01431 -14.53058 -14.40363 -13.78321 -13.57883 -13.22098 -13.17227 -12.95592 -12.61669 -12.49354 -12.43712 -12.30140 -12.15092 -11.76424 -11.51054 -11.49127 -11.25360 -10.92298 -10.61856 -10.41825 -10.32946 -10.07282 -9.61150 -9.36268 -9.13179 -9.11351 -8.87236 -8.50315 -8.35720 -7.91127 -6.01433 -4.07137 1.96761 2.49909 2.82025 3.12098 3.29691 3.36656 3.40356 3.65088 4.31582 4.42663 4.70238 4.73353 4.81962 4.96971 5.03765 5.23525 5.28119 5.36506 5.52757 5.56123 5.65857 5.72879 5.83096 5.87359 5.90905 6.01499 6.08445 6.14062 6.22185 6.35848 6.51391 6.69461 6.71527 6.96094 7.05238 7.09056 7.20789 7.31815 7.69107 7.84733 7.95168 8.01748 8.07135 8.42903 8.69882 8.96250 9.57787 11.04066 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.003168 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.503883 B = 8837.396066 C = 9008.820648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.045 3.955 5 C -0.267 4.267 6 C 0.087 3.913 7 C -0.059 4.059 8 C 0.515 3.485 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.126 4.126 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.123 4.123 23 C 0.114 3.886 24 N -0.258 5.258 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -13.889 14.317 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.159 5.159 4 C -0.101 4.101 5 C -0.296 4.296 6 C -0.080 4.080 7 C -0.101 4.101 8 C 0.301 3.699 9 O -0.421 6.421 10 N -0.336 5.336 11 C -0.019 4.019 12 C -0.164 4.164 13 C 0.031 3.969 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.161 4.161 23 C -0.008 4.008 24 N -0.080 5.080 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.187 0.813 31 H 0.163 0.837 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.259 -15.006 13.358 20.353 hybrid contribution -0.178 0.914 0.113 0.938 sum 3.081 -14.092 13.471 19.737 Atomic orbital electron populations 1.22052 0.93874 1.02662 1.03730 1.21624 0.96060 0.77776 1.03434 1.48756 1.35758 1.10107 1.21291 1.22444 0.96345 0.94862 0.96421 1.21330 1.09754 0.96779 1.01762 1.21619 0.96928 0.94282 0.95210 1.20075 1.04814 0.92773 0.92429 1.20243 0.77771 0.84356 0.87498 1.90670 1.49163 1.23905 1.78399 1.48213 1.67175 1.08643 1.09561 1.21959 0.99839 0.81851 0.98270 1.21950 0.94604 1.02722 0.97131 1.18627 0.96839 0.89519 0.91959 1.21219 1.19714 0.96563 1.17403 0.92747 1.24956 0.96557 0.97045 0.95421 1.69837 1.42317 1.08187 1.32784 0.86620 0.82294 0.78195 0.81047 1.20755 1.21274 1.19990 1.21997 0.96618 0.99705 0.97824 1.21641 0.98107 1.01230 0.79868 1.77441 1.22994 0.96239 1.11288 0.90868 0.90891 0.92192 0.89899 0.88971 0.81322 0.83658 0.87241 0.87335 0.91420 0.91903 0.87733 0.94256 0.95458 0.93012 0.92270 0.92999 0.92377 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.09 37.15 0.38 -1.02 16 2 C 0.13 1.16 7.23 -4.04 -0.03 1.13 16 3 N -0.38 -4.82 3.68 -61.36 -0.23 -5.05 16 4 C 0.04 0.49 11.45 -17.22 -0.20 0.29 16 5 C -0.27 -3.32 10.72 -40.02 -0.43 -3.75 16 6 C 0.09 1.34 6.01 -82.41 -0.50 0.85 16 7 C -0.06 -0.86 4.63 -29.03 -0.13 -0.99 16 8 C 0.51 9.46 7.69 -10.98 -0.08 9.38 16 9 O -0.54 -11.82 14.98 5.56 0.08 -11.74 16 10 N -0.60 -11.10 2.98 -173.06 -0.52 -11.62 16 11 C 0.10 1.81 6.31 -3.94 -0.02 1.79 16 12 C -0.13 -2.76 5.14 -26.83 -0.14 -2.89 16 13 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 14 C -0.51 -13.70 8.56 -34.44 -0.29 -14.00 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.39 11.31 55.43 0.63 -23.76 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.12 -2.60 5.30 -26.63 -0.14 -2.74 16 23 C 0.11 2.16 6.43 -3.73 -0.02 2.14 16 24 N -0.26 -4.33 11.78 33.67 0.40 -3.93 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 31 H 0.15 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.11 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.11 1.47 7.68 -51.93 -0.40 1.07 16 34 H 0.07 0.99 5.93 -51.93 -0.31 0.68 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -33.06 348.75 -8.13 -41.20 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.83 Total: 1.00 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.90 Total: -7.29 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.28 Total: -44.35 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.06 -8.13 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593594134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.701 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds