Wall clock time and date at job start Tue Mar 31 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46510 * 109.46985 * 2 1 4 4 C 1.34949 * 126.03389 * 124.99783 * 3 2 1 5 5 C 1.35317 * 107.73956 * 180.02562 * 4 3 2 6 6 C 1.39860 * 107.92487 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.89944 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 124.99977 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63059 * 359.72315 * 10 8 7 12 12 C 1.52760 * 109.00903 * 233.58159 * 11 10 8 13 13 C 1.53040 * 109.38219 * 305.58856 * 12 11 10 14 14 C 1.50698 * 109.45162 * 181.25116 * 13 12 11 15 15 H 1.07997 * 120.00517 * 239.94623 * 14 13 12 16 16 C 1.37880 * 119.99723 * 59.93708 * 14 13 12 17 17 N 1.31520 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46814 * 90.00460 * 18 16 14 20 20 H 1.48497 * 109.47362 * 210.00048 * 18 16 14 21 21 H 1.48492 * 109.47376 * 330.00719 * 18 16 14 22 22 C 1.53042 * 109.53627 * 61.23932 * 13 12 11 23 23 C 1.46926 * 120.62707 * 180.02562 * 10 8 7 24 24 N 1.30841 * 108.20548 * 0.26517 * 6 5 4 25 25 H 1.09006 * 109.47196 * 60.00232 * 1 2 3 26 26 H 1.09002 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47468 * 299.99953 * 1 2 3 28 28 H 1.09000 * 109.47468 * 240.00047 * 2 1 3 29 29 H 1.08997 * 109.47424 * 119.99792 * 2 1 3 30 30 H 1.07996 * 126.12671 * 359.96615 * 4 3 2 31 31 H 1.08009 * 126.03377 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47152 * 5.00070 * 7 6 5 33 33 H 1.09001 * 109.46980 * 245.00171 * 7 6 5 34 34 H 1.08996 * 109.58649 * 353.41979 * 11 10 8 35 35 H 1.09004 * 109.58204 * 113.84425 * 11 10 8 36 36 H 1.09000 * 109.56394 * 185.56047 * 12 11 10 37 37 H 1.09001 * 109.38512 * 65.51568 * 12 11 10 38 38 H 1.09001 * 109.46468 * 301.22386 * 13 12 11 39 39 H 0.97002 * 119.99615 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.49904 * 178.67973 * 22 13 12 41 41 H 1.09000 * 109.52420 * 58.60476 * 22 13 12 42 42 H 1.09005 * 109.58410 * 246.15856 * 23 10 8 43 43 H 1.09001 * 109.58875 * 6.43498 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8940 5 6 3.0711 3.2138 0.5463 6 6 2.3120 3.4726 -0.5995 7 6 2.2341 4.7889 -1.3292 8 6 2.5920 4.5818 -2.7784 9 8 2.8812 3.4743 -3.1792 10 7 2.5895 5.6271 -3.6291 11 6 2.2343 6.9733 -3.1599 12 6 1.1191 7.5300 -4.0432 13 6 1.5543 7.4694 -5.5091 14 6 0.4677 8.0465 -6.3794 15 1 0.0043 7.4364 -7.1406 16 6 0.0651 9.3535 -6.2037 17 7 0.6297 10.0965 -5.2770 18 14 -1.2812 10.0691 -7.2829 19 1 -2.6022 9.8377 -6.6451 20 1 -1.0601 11.5283 -7.4479 21 1 -1.2517 9.4104 -8.6134 22 6 1.8077 6.0138 -5.9080 23 6 2.9356 5.4408 -5.0449 24 7 1.6762 2.3763 -0.9249 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3182 1.4128 1.7364 31 1 3.7037 3.9208 1.0626 32 1 2.9322 5.4953 -0.8799 33 1 1.2209 5.1843 -1.2580 34 1 1.8891 6.9211 -2.1274 35 1 3.1063 7.6243 -3.2234 36 1 0.9164 8.5646 -3.7664 37 1 0.2173 6.9332 -3.9064 38 1 2.4697 8.0464 -5.6405 39 1 0.3467 11.0161 -5.1537 40 1 2.0949 5.9691 -6.9587 41 1 0.8998 5.4305 -5.7541 42 1 3.8660 5.9641 -5.2654 43 1 3.0555 4.3780 -5.2550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593594134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:39 Heat of formation + Delta-G solvation = 12.547165 kcal Electronic energy + Delta-G solvation = -23211.699596 eV Core-core repulsion = 19871.380472 eV Total energy + Delta-G solvation = -3340.319124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12283 -40.91170 -38.37420 -35.58000 -35.29931 -33.39106 -32.35882 -31.59378 -30.62920 -29.13149 -27.78987 -24.90424 -24.15665 -23.70806 -21.96100 -21.79800 -20.59784 -19.53839 -18.57890 -17.97920 -17.75612 -16.72144 -16.49636 -16.46571 -16.12406 -15.22189 -14.96793 -14.84485 -14.70786 -14.68947 -14.34347 -14.00988 -13.98641 -13.59891 -13.26060 -13.16469 -13.08483 -12.91151 -12.85786 -12.75511 -12.45351 -12.21782 -12.13228 -11.91151 -11.45716 -11.36871 -10.99885 -10.93779 -10.66802 -10.37675 -10.12663 -9.49913 -9.39560 -8.06739 -6.19505 1.06873 1.41644 1.43695 1.52569 1.70085 1.70603 1.81902 2.28618 2.45034 3.19567 3.51155 3.71856 3.89144 4.06366 4.11871 4.19872 4.28840 4.31932 4.35683 4.40606 4.52108 4.54155 4.59723 4.68797 4.78093 4.82169 4.88373 4.92141 4.97298 5.01555 5.16102 5.19982 5.24236 5.28945 5.45313 5.58333 5.67830 5.76374 6.01062 6.15986 6.29731 6.41402 6.56792 6.89144 6.89482 7.25948 7.47729 8.96646 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.003168 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.503883 B = 8837.396066 C = 9008.820648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.381 5.381 4 C 0.056 3.944 5 C -0.283 4.283 6 C 0.063 3.937 7 C -0.054 4.054 8 C 0.512 3.488 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.113 3.887 12 C -0.117 4.117 13 C 0.047 3.953 14 C -0.537 4.537 15 H 0.044 0.956 16 C 0.019 3.981 17 N -0.909 5.909 18 Si 0.948 3.052 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.275 1.275 22 C -0.113 4.113 23 C 0.119 3.881 24 N -0.318 5.318 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.217 0.783 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.006 0.994 39 H 0.262 0.738 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -14.534 16.537 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 N -0.165 5.165 4 C -0.090 4.090 5 C -0.312 4.312 6 C -0.103 4.103 7 C -0.095 4.095 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.338 5.338 11 C -0.009 4.009 12 C -0.156 4.156 13 C 0.028 3.972 14 C -0.575 4.575 15 H 0.062 0.938 16 C -0.180 4.180 17 N -0.549 5.549 18 Si 0.774 3.226 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.200 1.200 22 C -0.151 4.151 23 C -0.004 4.004 24 N -0.141 5.141 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.233 0.767 31 H 0.187 0.813 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.043 0.957 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.866 -15.645 15.580 22.416 hybrid contribution -0.375 1.043 -0.580 1.251 sum 3.491 -14.602 15.000 21.223 Atomic orbital electron populations 1.21996 0.93991 1.03831 1.01866 1.21990 0.96079 0.76384 1.05261 1.49087 1.35876 1.10668 1.20842 1.23217 0.94687 0.94590 0.96514 1.21709 1.10077 0.98149 1.01252 1.21903 0.97748 0.94209 0.96435 1.20149 1.06022 0.93797 0.89552 1.20940 0.76559 0.83434 0.88953 1.90649 1.50764 1.25311 1.79370 1.48273 1.67125 1.09105 1.09273 1.21890 0.98576 0.81286 0.99128 1.21731 0.95688 1.01437 0.96739 1.18597 0.95031 0.90499 0.93063 1.21537 1.20790 0.97149 1.17988 0.93812 1.25604 0.98440 0.97356 0.96583 1.69936 1.43085 1.08353 1.33492 0.85721 0.79886 0.77575 0.79430 1.20361 1.20641 1.19959 1.21843 0.96850 0.97889 0.98553 1.21506 0.97641 1.00878 0.80346 1.77335 1.25081 0.97806 1.13844 0.94358 0.88190 0.92303 0.90533 0.84596 0.76674 0.81259 0.83786 0.86577 0.87669 0.90991 0.89888 0.95666 0.97573 0.92852 0.92043 0.94497 0.91059 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.09 71.98 0.73 -1.81 16 2 C 0.12 1.91 7.23 86.38 0.62 2.54 16 3 N -0.38 -9.18 3.68 -348.05 -1.28 -10.46 16 4 C 0.06 1.04 11.45 83.54 0.96 2.00 16 5 C -0.28 -6.32 10.72 21.99 0.24 -6.09 16 6 C 0.06 1.88 6.01 43.10 0.26 2.14 16 7 C -0.05 -1.48 4.63 29.10 0.13 -1.35 16 8 C 0.51 18.51 7.69 87.66 0.67 19.18 16 9 O -0.58 -25.47 14.98 -3.03 -0.05 -25.52 16 10 N -0.61 -21.85 2.98 -819.82 -2.44 -24.29 16 11 C 0.11 3.83 6.31 86.22 0.54 4.37 16 12 C -0.12 -5.19 5.14 30.53 0.16 -5.03 16 13 C 0.05 2.27 2.07 -11.51 -0.02 2.25 16 14 C -0.54 -29.40 8.56 25.60 0.22 -29.18 16 15 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 16 C 0.02 1.04 5.30 84.65 0.45 1.49 16 17 N -0.91 -50.04 11.31 21.45 0.24 -49.79 16 18 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.11 -4.87 5.30 30.66 0.16 -4.70 16 23 C 0.12 4.53 6.43 86.35 0.56 5.09 16 24 N -0.32 -10.62 11.78 -47.39 -0.56 -11.18 16 25 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.14 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 2.84 7.93 -2.39 -0.02 2.82 16 33 H 0.12 2.97 7.68 -2.39 -0.02 2.95 16 34 H 0.11 2.79 5.93 -2.39 -0.01 2.77 16 35 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.08 4.06 6.03 -2.39 -0.01 4.05 16 37 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.07 2.52 8.14 -2.38 -0.02 2.51 16 43 H 0.07 2.85 7.00 -2.39 -0.02 2.83 16 Total: -1.00 -74.36 348.75 4.60 -69.76 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.98 Total: 15.35 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.67 Total: -9.09 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.04 Total: -95.73 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.05 Total: -25.52 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.36 4.60 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593594134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.303 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds