Wall clock time and date at job start Tue Mar 31 2020 07:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36343 * 125.63412 * 2 1 4 4 C 1.34853 * 108.21374 * 179.83491 * 3 2 1 5 5 C 1.40888 * 107.41872 * 0.42332 * 4 3 2 6 6 C 1.50698 * 126.29187 * 179.73851 * 5 4 3 7 7 N 1.46495 * 109.47154 * 270.00123 * 6 5 4 8 8 C 1.34779 * 120.00568 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99223 * 354.91838 * 8 7 6 10 10 N 1.34770 * 120.00569 * 174.92265 * 8 7 6 11 11 C 1.46925 * 120.63192 * 4.73710 * 10 8 7 12 12 C 1.52757 * 109.01325 * 233.58673 * 11 10 8 13 13 C 1.53045 * 109.37996 * 305.58893 * 12 11 10 14 14 C 1.53039 * 109.53775 * 61.23997 * 13 12 11 15 15 H 1.09000 * 109.50187 * 58.58383 * 14 13 12 16 16 C 1.50697 * 109.49480 * 178.68139 * 14 13 12 17 17 H 1.07997 * 120.00063 * 359.83720 * 16 14 13 18 18 C 1.37885 * 120.00017 * 179.83660 * 16 14 13 19 19 N 1.31511 * 119.99885 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00069 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46943 * 89.99745 * 20 18 16 22 22 H 1.48495 * 109.47081 * 210.00010 * 20 18 16 23 23 H 1.48498 * 109.47098 * 329.99912 * 20 18 16 24 24 C 1.46929 * 120.62897 * 185.02287 * 10 8 7 25 25 C 1.34849 * 107.41792 * 359.73457 * 5 4 3 26 26 H 1.09004 * 109.46678 * 269.69529 * 1 2 3 27 27 H 1.08996 * 109.46757 * 149.69430 * 1 2 3 28 28 H 1.09001 * 109.46948 * 29.69327 * 1 2 3 29 29 H 1.07994 * 125.89015 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.28558 * 180.16153 * 4 3 2 31 31 H 1.08999 * 109.47441 * 29.99856 * 6 5 4 32 32 H 1.08997 * 109.47314 * 150.00172 * 6 5 4 33 33 H 0.97005 * 120.00199 * 359.97438 * 7 6 5 34 34 H 1.09006 * 109.58648 * 353.42680 * 11 10 8 35 35 H 1.09001 * 109.58741 * 113.84556 * 11 10 8 36 36 H 1.08992 * 109.56595 * 185.55181 * 12 11 10 37 37 H 1.09004 * 109.38349 * 65.51193 * 12 11 10 38 38 H 1.08995 * 109.45947 * 301.21512 * 13 12 11 39 39 H 1.09002 * 109.44233 * 181.25090 * 13 12 11 40 40 H 0.96998 * 119.99979 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58343 * 246.15307 * 24 10 8 42 42 H 1.08993 * 109.58804 * 6.57800 * 24 10 8 43 43 H 1.08001 * 125.89521 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0037 5 6 3.5461 -0.7044 -0.0039 6 6 4.7607 -1.5964 -0.0087 7 7 5.1543 -1.8780 -1.3914 8 6 6.2221 -2.6614 -1.6420 9 8 6.9132 -3.0588 -0.7240 10 7 6.5236 -3.0042 -2.9100 11 6 5.7617 -2.4492 -4.0370 12 6 5.2462 -3.5973 -4.9027 13 6 6.4198 -4.4888 -5.3153 14 6 7.0769 -5.0806 -4.0663 15 1 6.3396 -5.6538 -3.5042 16 6 8.2119 -5.9837 -4.4750 17 1 8.4404 -6.1241 -5.5212 18 6 8.9588 -6.6307 -3.5134 19 7 8.6809 -6.4593 -2.2395 20 14 10.3653 -7.7507 -4.0201 21 1 11.6198 -6.9609 -4.1082 22 1 10.5283 -8.8280 -3.0112 23 1 10.0658 -8.3534 -5.3438 24 6 7.6167 -3.9449 -3.1913 25 6 2.2594 -1.1081 -0.0059 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8927 -0.5091 29 1 1.9172 2.1324 0.0004 30 1 4.4166 1.3437 0.0071 31 1 5.5804 -1.0970 0.5078 32 1 4.5268 -2.5316 0.5001 33 1 4.6461 -1.5012 -2.1267 34 1 4.9183 -1.8715 -3.6586 35 1 6.4086 -1.8067 -4.6344 36 1 4.7643 -3.1949 -5.7936 37 1 4.5259 -4.1847 -4.3332 38 1 7.1512 -3.8954 -5.8639 39 1 6.0563 -5.2958 -5.9515 40 1 9.2060 -6.9148 -1.5630 41 1 8.4180 -3.4269 -3.7184 42 1 7.9968 -4.3538 -2.2553 43 1 1.9172 -2.1324 -0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595534571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:56 Heat of formation + Delta-G solvation = 24.706352 kcal Electronic energy + Delta-G solvation = -23284.122404 eV Core-core repulsion = 19944.330542 eV Total energy + Delta-G solvation = -3339.791862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31486 -39.47412 -36.79486 -34.69043 -33.34181 -32.52366 -31.58807 -29.76880 -29.19365 -27.45344 -25.17496 -24.89939 -23.56189 -21.72106 -20.47173 -19.93240 -19.77693 -18.63811 -17.62216 -16.85182 -16.07206 -15.65448 -15.27593 -14.82830 -14.52506 -14.21828 -13.79565 -13.64554 -13.48446 -13.32079 -13.03641 -12.94449 -12.57822 -12.48266 -12.46957 -12.11755 -11.85862 -11.71476 -11.44608 -10.92855 -10.81423 -10.44335 -10.30917 -10.15447 -9.79295 -9.35553 -9.01695 -8.88924 -8.64715 -8.50131 -8.34763 -8.25891 -7.49896 -5.91178 -4.00170 2.07674 2.71062 2.77316 3.36226 3.43301 3.45489 3.67029 4.03974 4.44817 4.48612 4.66361 4.80117 4.84013 5.03467 5.04796 5.24041 5.38249 5.41254 5.41647 5.59991 5.71168 5.82173 6.02536 6.05220 6.09406 6.25269 6.39587 6.40037 6.67476 6.76684 6.85150 6.91074 7.03899 7.06775 7.09603 7.19092 7.20213 7.47037 7.64572 7.85526 8.02894 8.16695 8.49351 8.77237 9.03494 9.43702 9.65019 11.13834 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.003306 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.286097 B = 8466.536602 C = 8923.743091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.454 5.454 3 C -0.023 4.023 4 C -0.182 4.182 5 C -0.181 4.181 6 C 0.214 3.786 7 N -0.752 5.752 8 C 0.700 3.300 9 O -0.587 6.587 10 N -0.624 5.624 11 C 0.117 3.883 12 C -0.133 4.133 13 C -0.109 4.109 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.130 3.870 25 C 0.006 3.994 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.390 0.610 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.037 0.963 42 H 0.122 0.878 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 15.006 1.940 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.130 5.130 3 C -0.152 4.152 4 C -0.206 4.206 5 C -0.188 4.188 6 C 0.089 3.911 7 N -0.411 5.411 8 C 0.401 3.599 9 O -0.465 6.465 10 N -0.361 5.361 11 C -0.008 4.008 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C 0.009 3.991 25 C -0.126 4.126 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.177 0.823 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.226 0.774 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.140 0.860 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.937 14.634 2.829 22.562 hybrid contribution 0.353 -0.339 -0.641 0.806 sum -16.584 14.295 2.188 22.004 Atomic orbital electron populations 1.22006 0.77383 1.04268 1.03115 1.43979 1.06104 1.06230 1.56719 1.21790 0.90453 0.91374 1.11554 1.20874 0.95988 0.94501 1.09285 1.19556 0.93436 0.94194 1.11636 1.19220 0.92443 0.96639 0.82766 1.45448 1.32338 1.55242 1.08111 1.15979 0.80942 0.79256 0.83703 1.90909 1.52427 1.59727 1.43394 1.47759 1.37028 1.48414 1.02857 1.21376 0.94762 0.95628 0.89002 1.21874 0.99306 0.97533 0.98473 1.21609 0.95568 0.97539 0.99979 1.18987 0.95639 0.92543 0.90810 0.95413 1.21075 1.15242 1.26808 0.92858 0.92446 1.25059 0.97444 0.96536 0.95016 1.69898 1.39689 1.42502 0.99485 0.86607 0.82744 0.80518 0.78192 1.20661 1.21258 1.20015 1.22145 0.85355 0.87505 1.04086 1.21764 0.90079 0.91495 1.09213 0.91051 0.89867 0.89984 0.82277 0.84588 0.91492 0.91839 0.77400 0.92128 0.92339 0.92471 0.92283 0.93235 0.93183 0.92687 0.94428 0.85986 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.12 59.85 0.67 1.02 16 2 N -0.45 -4.03 3.15 -124.52 -0.39 -4.42 16 3 C -0.02 -0.21 11.43 -16.75 -0.19 -0.40 16 4 C -0.18 -2.04 10.81 -39.78 -0.43 -2.47 16 5 C -0.18 -2.25 5.50 -104.82 -0.58 -2.82 16 6 C 0.21 3.23 6.17 -5.20 -0.03 3.20 16 7 N -0.75 -12.53 5.46 -66.42 -0.36 -12.89 16 8 C 0.70 15.26 8.30 -86.92 -0.72 14.54 16 9 O -0.59 -15.50 15.79 5.28 0.08 -15.42 16 10 N -0.62 -13.29 2.98 -178.76 -0.53 -13.82 16 11 C 0.12 1.92 6.40 -3.94 -0.03 1.90 16 12 C -0.13 -2.23 6.07 -26.83 -0.16 -2.39 16 13 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 14 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.43 8.56 -34.44 -0.29 -14.72 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -26.25 11.39 55.43 0.63 -25.62 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.13 3.29 5.39 -3.71 -0.02 3.27 16 25 C 0.01 0.06 11.35 -16.75 -0.19 -0.13 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.39 5.61 5.92 -40.82 -0.24 5.36 16 34 H 0.06 0.82 5.57 -51.93 -0.29 0.53 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.12 3.62 5.15 -51.93 -0.27 3.35 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -34.21 347.95 -9.45 -43.65 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.68 Total: 5.55 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.42 Total: 1.09 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.66 Total: -56.75 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.21 -9.45 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595534571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.359 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds