Wall clock time and date at job start Tue Mar 31 2020 07:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36343 * 125.63412 * 2 1 4 4 C 1.34853 * 108.21374 * 179.83491 * 3 2 1 5 5 C 1.40888 * 107.41872 * 0.42332 * 4 3 2 6 6 C 1.50698 * 126.29187 * 179.73851 * 5 4 3 7 7 N 1.46495 * 109.47154 * 270.00123 * 6 5 4 8 8 C 1.34779 * 120.00568 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99223 * 354.91838 * 8 7 6 10 10 N 1.34770 * 120.00569 * 174.92265 * 8 7 6 11 11 C 1.46925 * 120.63192 * 4.73710 * 10 8 7 12 12 C 1.52757 * 109.01325 * 233.58673 * 11 10 8 13 13 C 1.53045 * 109.37996 * 305.58893 * 12 11 10 14 14 C 1.53039 * 109.53775 * 61.23997 * 13 12 11 15 15 H 1.09000 * 109.50187 * 58.58383 * 14 13 12 16 16 C 1.50697 * 109.49480 * 178.68139 * 14 13 12 17 17 H 1.07997 * 120.00063 * 359.83720 * 16 14 13 18 18 C 1.37885 * 120.00017 * 179.83660 * 16 14 13 19 19 N 1.31511 * 119.99885 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00069 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46943 * 89.99745 * 20 18 16 22 22 H 1.48495 * 109.47081 * 210.00010 * 20 18 16 23 23 H 1.48498 * 109.47098 * 329.99912 * 20 18 16 24 24 C 1.46929 * 120.62897 * 185.02287 * 10 8 7 25 25 C 1.34849 * 107.41792 * 359.73457 * 5 4 3 26 26 H 1.09004 * 109.46678 * 269.69529 * 1 2 3 27 27 H 1.08996 * 109.46757 * 149.69430 * 1 2 3 28 28 H 1.09001 * 109.46948 * 29.69327 * 1 2 3 29 29 H 1.07994 * 125.89015 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.28558 * 180.16153 * 4 3 2 31 31 H 1.08999 * 109.47441 * 29.99856 * 6 5 4 32 32 H 1.08997 * 109.47314 * 150.00172 * 6 5 4 33 33 H 0.97005 * 120.00199 * 359.97438 * 7 6 5 34 34 H 1.09006 * 109.58648 * 353.42680 * 11 10 8 35 35 H 1.09001 * 109.58741 * 113.84556 * 11 10 8 36 36 H 1.08992 * 109.56595 * 185.55181 * 12 11 10 37 37 H 1.09004 * 109.38349 * 65.51193 * 12 11 10 38 38 H 1.08995 * 109.45947 * 301.21512 * 13 12 11 39 39 H 1.09002 * 109.44233 * 181.25090 * 13 12 11 40 40 H 0.96998 * 119.99979 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58343 * 246.15307 * 24 10 8 42 42 H 1.08993 * 109.58804 * 6.57800 * 24 10 8 43 43 H 1.08001 * 125.89521 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0037 5 6 3.5461 -0.7044 -0.0039 6 6 4.7607 -1.5964 -0.0087 7 7 5.1543 -1.8780 -1.3914 8 6 6.2221 -2.6614 -1.6420 9 8 6.9132 -3.0588 -0.7240 10 7 6.5236 -3.0042 -2.9100 11 6 5.7617 -2.4492 -4.0370 12 6 5.2462 -3.5973 -4.9027 13 6 6.4198 -4.4888 -5.3153 14 6 7.0769 -5.0806 -4.0663 15 1 6.3396 -5.6538 -3.5042 16 6 8.2119 -5.9837 -4.4750 17 1 8.4404 -6.1241 -5.5212 18 6 8.9588 -6.6307 -3.5134 19 7 8.6809 -6.4593 -2.2395 20 14 10.3653 -7.7507 -4.0201 21 1 11.6198 -6.9609 -4.1082 22 1 10.5283 -8.8280 -3.0112 23 1 10.0658 -8.3534 -5.3438 24 6 7.6167 -3.9449 -3.1913 25 6 2.2594 -1.1081 -0.0059 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8927 -0.5091 29 1 1.9172 2.1324 0.0004 30 1 4.4166 1.3437 0.0071 31 1 5.5804 -1.0970 0.5078 32 1 4.5268 -2.5316 0.5001 33 1 4.6461 -1.5012 -2.1267 34 1 4.9183 -1.8715 -3.6586 35 1 6.4086 -1.8067 -4.6344 36 1 4.7643 -3.1949 -5.7936 37 1 4.5259 -4.1847 -4.3332 38 1 7.1512 -3.8954 -5.8639 39 1 6.0563 -5.2958 -5.9515 40 1 9.2060 -6.9148 -1.5630 41 1 8.4180 -3.4269 -3.7184 42 1 7.9968 -4.3538 -2.2553 43 1 1.9172 -2.1324 -0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595534571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:56 Heat of formation + Delta-G solvation = 2.968389 kcal Electronic energy + Delta-G solvation = -23285.065032 eV Core-core repulsion = 19944.330542 eV Total energy + Delta-G solvation = -3340.734490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09716 -41.14022 -38.49951 -36.09269 -35.21933 -33.70810 -33.12893 -31.52110 -30.20303 -28.31309 -26.98949 -26.23877 -24.98610 -23.41268 -21.67261 -21.19431 -20.80274 -20.15978 -19.09561 -18.26338 -17.66358 -17.10798 -16.57002 -16.37810 -15.99821 -15.35080 -15.17695 -15.11416 -14.78707 -14.71901 -14.38747 -14.27927 -13.91636 -13.62853 -13.52504 -13.38626 -13.07376 -12.86840 -12.70669 -12.63863 -12.53671 -12.26484 -12.20426 -11.83490 -11.61142 -11.21444 -10.93791 -10.81471 -10.49779 -10.08513 -9.44767 -9.20875 -9.06315 -8.07491 -6.25074 1.25986 1.42238 1.42941 1.53824 1.70575 2.14799 2.23463 2.33487 2.44500 3.17241 3.26722 3.98649 4.06795 4.18747 4.19187 4.22192 4.29974 4.40970 4.49372 4.51628 4.62451 4.74362 4.77673 4.78814 4.83536 4.87628 4.91871 5.12369 5.22934 5.29117 5.31005 5.36437 5.52918 5.58596 5.62697 5.68968 5.92018 6.01096 6.01277 6.22895 6.27727 6.39174 6.53997 6.88240 7.20422 7.44805 7.74184 8.95784 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.003306 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.286097 B = 8466.536602 C = 8923.743091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.450 5.450 3 C -0.010 4.010 4 C -0.208 4.208 5 C -0.204 4.204 6 C 0.218 3.782 7 N -0.727 5.727 8 C 0.692 3.308 9 O -0.643 6.643 10 N -0.628 5.628 11 C 0.111 3.889 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.039 3.961 15 H -0.014 1.014 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.915 5.915 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.262 1.262 24 C 0.144 3.856 25 C 0.005 3.995 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.192 0.808 30 H 0.135 0.865 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.405 0.595 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.259 0.741 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.598 16.837 0.018 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.125 5.125 3 C -0.140 4.140 4 C -0.232 4.232 5 C -0.211 4.211 6 C 0.094 3.906 7 N -0.386 5.386 8 C 0.393 3.607 9 O -0.525 6.525 10 N -0.364 5.364 11 C -0.011 4.011 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.020 3.980 15 H 0.004 0.996 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.554 5.554 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.186 1.186 24 C 0.021 3.979 25 C -0.128 4.128 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.209 0.791 30 H 0.153 0.847 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.243 0.757 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.475 16.512 0.857 25.548 hybrid contribution 1.024 -0.859 -0.018 1.336 sum -18.452 15.653 0.839 24.212 Atomic orbital electron populations 1.22325 0.74706 1.05917 1.04415 1.44269 1.07701 1.05429 1.55070 1.22237 0.89712 0.92759 1.09258 1.20992 0.97278 0.93935 1.11013 1.19309 0.92893 0.94456 1.14437 1.19155 0.93467 0.96519 0.81451 1.45278 1.30451 1.53466 1.09445 1.16258 0.81605 0.79576 0.83251 1.90864 1.54540 1.61936 1.45202 1.47671 1.36692 1.47787 1.04225 1.21741 0.95716 0.96021 0.87640 1.21828 0.97544 0.96695 1.00200 1.21500 0.96976 0.98351 0.97350 1.18913 0.94377 0.92092 0.92663 0.99621 1.21526 1.15772 1.27046 0.93079 0.91871 1.25933 1.00170 0.98191 0.94873 1.70108 1.40968 1.43631 1.00671 0.85542 0.79450 0.78420 0.78165 1.20091 1.21367 1.18575 1.21573 0.86552 0.88284 1.01527 1.21895 0.89823 0.92612 1.08466 0.89896 0.88838 0.87854 0.79093 0.84737 0.93089 0.93255 0.75656 0.88629 0.90437 0.87717 0.93178 0.92432 0.92874 0.93200 0.95011 0.90787 0.80953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.12 127.77 1.42 1.81 16 2 N -0.45 -6.61 3.15 -547.88 -1.72 -8.33 16 3 C -0.01 -0.15 11.43 83.21 0.95 0.80 16 4 C -0.21 -4.40 10.81 22.14 0.24 -4.16 16 5 C -0.20 -4.93 5.50 -19.99 -0.11 -5.04 16 6 C 0.22 6.83 6.17 85.63 0.53 7.36 16 7 N -0.73 -24.33 5.46 -482.31 -2.63 -26.96 16 8 C 0.69 31.20 8.30 179.06 1.49 32.68 16 9 O -0.64 -36.21 15.79 -4.01 -0.06 -36.27 16 10 N -0.63 -27.08 2.98 -837.75 -2.50 -29.58 16 11 C 0.11 3.38 6.40 86.22 0.55 3.93 16 12 C -0.12 -3.79 6.07 30.53 0.19 -3.60 16 13 C -0.10 -4.12 5.11 30.62 0.16 -3.96 16 14 C 0.04 2.03 2.25 -11.46 -0.03 2.01 16 15 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 16 C -0.54 -30.27 8.56 25.60 0.22 -30.06 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 18 C 0.01 0.44 5.30 84.66 0.45 0.89 16 19 N -0.92 -57.50 11.39 21.45 0.24 -57.26 16 20 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.14 7.58 5.39 86.36 0.47 8.04 16 25 C 0.00 0.10 11.35 83.21 0.94 1.04 16 26 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 30 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.40 10.96 5.92 -92.70 -0.55 10.41 16 34 H 0.10 2.24 5.57 -2.38 -0.01 2.23 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 41 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 4.68 5.15 -2.39 -0.01 4.67 16 43 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -80.30 347.95 3.26 -77.04 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.45 Total: 22.23 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 7.46 Total: 11.74 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -6.61 Total: -122.13 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.06 Total: -36.27 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -80.30 3.26 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595534571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.004 kcal (2) G-P(sol) polarization free energy of solvation -80.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds