Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35545 * 116.99818 * 180.02562 * 3 2 1 5 5 C 1.38923 * 120.46517 * 180.02562 * 4 3 2 6 6 C 1.39237 * 118.28721 * 179.97438 * 5 4 3 7 7 N 1.38606 * 120.49652 * 179.97438 * 6 5 4 8 8 C 1.46842 * 111.00324 * 304.20773 * 7 6 5 9 9 C 1.53029 * 109.52923 * 174.15985 * 8 7 6 10 10 C 1.53124 * 109.27968 * 59.17980 * 9 8 7 11 11 C 1.50699 * 109.52574 * 182.44382 * 10 9 8 12 12 H 1.07998 * 119.99754 * 119.68266 * 11 10 9 13 13 C 1.37875 * 119.99999 * 299.68576 * 11 10 9 14 14 N 1.31517 * 119.99943 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47852 * 89.99339 * 15 13 11 17 17 H 1.48503 * 109.47015 * 209.99847 * 15 13 11 18 18 H 1.48502 * 109.47146 * 329.99158 * 15 13 11 19 19 C 1.53123 * 109.15670 * 302.34799 * 10 9 8 20 20 C 1.46847 * 111.00138 * 179.97438 * 7 6 5 21 21 N 1.33153 * 119.00676 * 359.97438 * 6 5 4 22 22 C 1.31722 * 120.83253 * 0.02562 * 21 6 5 23 23 C 1.50698 * 119.05165 * 180.02562 * 22 21 6 24 24 N 1.31775 * 121.89677 * 359.73668 * 22 21 6 25 25 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47084 * 299.99957 * 1 2 3 27 27 H 1.08996 * 109.47090 * 59.99784 * 1 2 3 28 28 H 1.08999 * 109.47084 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47592 * 120.00144 * 2 1 3 30 30 H 1.07997 * 120.85677 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.46021 * 294.17912 * 8 7 6 32 32 H 1.09005 * 109.46310 * 54.14352 * 8 7 6 33 33 H 1.09007 * 109.50507 * 299.23916 * 9 8 7 34 34 H 1.08998 * 109.50801 * 179.12060 * 9 8 7 35 35 H 1.08995 * 109.51854 * 62.25111 * 10 9 8 36 36 H 0.96998 * 120.00055 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.50635 * 297.70843 * 19 10 9 38 38 H 1.08998 * 109.50025 * 177.59341 * 19 10 9 39 39 H 1.09001 * 109.46429 * 305.85983 * 20 7 6 40 40 H 1.09005 * 109.45755 * 65.82549 * 20 7 6 41 41 H 1.08996 * 109.47628 * 89.99686 * 23 22 21 42 42 H 1.09001 * 109.47045 * 209.99950 * 23 22 21 43 43 H 1.09006 * 109.46938 * 329.99396 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3501 1.5249 -0.0005 5 6 3.8915 2.8042 0.0000 6 6 5.2778 2.9341 -0.0001 7 7 5.8668 4.1888 -0.0001 8 6 5.3928 4.9926 -1.1338 9 6 5.9487 6.4139 -1.0211 10 6 7.4789 6.3593 -1.0146 11 6 8.0319 7.7506 -0.8434 12 1 8.6540 7.9834 0.0082 13 6 7.7436 8.7264 -1.7738 14 7 6.9863 8.4427 -2.8110 15 14 8.4296 10.4508 -1.5620 16 1 9.7483 10.5456 -2.2380 17 1 7.4930 11.4335 -2.1640 18 1 8.5926 10.7445 -0.1155 19 6 7.9453 5.4768 0.1466 20 6 7.3314 4.0826 0.0004 21 7 6.0292 1.8348 -0.0001 22 6 5.4765 0.6392 -0.0005 23 6 6.3652 -0.5778 0.0001 24 7 4.1688 0.4766 0.0041 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2536 3.6757 0.0004 31 1 5.7336 4.5423 -2.0661 32 1 4.3033 5.0270 -1.1244 33 1 5.5969 6.8699 -0.0955 34 1 5.6093 7.0060 -1.8710 35 1 7.8323 5.9391 -1.9562 36 1 6.7838 9.1291 -3.4658 37 1 7.6250 5.9179 1.0905 38 1 9.0324 5.3992 0.1309 39 1 7.6498 3.4561 0.8336 40 1 7.6635 3.6364 -0.9370 41 1 6.5788 -0.8713 1.0278 42 1 5.8611 -1.3961 -0.5142 43 1 7.2986 -0.3464 -0.5132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596189880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = 6.025182 kcal Electronic energy + Delta-G solvation = -23327.235024 eV Core-core repulsion = 19986.633086 eV Total energy + Delta-G solvation = -3340.601938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23770 -39.11472 -37.99594 -34.58436 -33.07271 -32.36216 -31.30770 -30.56989 -29.97258 -28.31276 -26.05211 -23.97966 -23.12013 -22.74397 -21.85408 -21.15679 -18.83989 -18.44747 -17.50591 -16.51768 -16.43657 -15.61164 -15.21049 -15.00692 -14.67277 -14.52126 -14.02424 -13.69566 -13.42836 -13.29725 -12.99945 -12.85873 -12.59868 -12.45268 -12.32039 -12.20341 -11.85072 -11.54311 -11.21964 -11.06575 -10.92438 -10.63482 -10.54785 -10.33208 -10.24763 -10.10288 -9.53992 -9.28195 -9.12993 -9.00282 -8.78137 -8.34900 -8.07000 -6.01831 -4.06986 1.11037 1.34197 2.77380 3.29876 3.36906 3.40357 3.67529 3.94809 3.97529 4.42560 4.46790 4.77637 4.82112 5.06621 5.17928 5.28673 5.32440 5.35940 5.48170 5.49925 5.55397 5.58544 5.61742 5.75080 5.80376 5.85939 5.94867 6.04731 6.15513 6.25804 6.33783 6.52856 6.73644 6.77250 6.98035 7.06894 7.19523 7.30923 7.42938 7.49513 7.71386 7.95287 8.05449 8.29334 8.42039 8.96450 9.57944 11.04772 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.003411 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.351194 B = 8205.660973 C = 9031.920389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.302 6.302 4 C 0.377 3.623 5 C -0.276 4.276 6 C 0.394 3.606 7 N -0.465 5.465 8 C 0.062 3.938 9 C -0.107 4.107 10 C 0.045 3.955 11 C -0.510 4.510 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.112 4.112 20 C 0.071 3.929 21 N -0.574 5.574 22 C 0.374 3.626 23 C -0.082 4.082 24 N -0.603 5.603 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -17.256 4.374 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.207 6.207 4 C 0.193 3.807 5 C -0.303 4.303 6 C 0.156 3.844 7 N -0.181 5.181 8 C -0.062 4.062 9 C -0.145 4.145 10 C 0.027 3.973 11 C -0.548 4.548 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.150 4.150 20 C -0.055 4.055 21 N -0.300 5.300 22 C 0.105 3.895 23 C -0.140 4.140 24 N -0.337 5.337 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.240 -17.376 4.628 19.780 hybrid contribution -0.100 1.186 -0.430 1.266 sum -8.340 -16.190 4.198 18.689 Atomic orbital electron populations 1.21825 0.92967 1.02843 1.03437 1.22628 0.94723 0.80962 1.02621 1.86230 1.16573 1.30807 1.87102 1.19659 0.83939 0.89509 0.87609 1.21175 0.95098 0.96948 1.17042 1.20063 0.89022 0.89517 0.85806 1.58838 1.10275 1.07499 1.41494 1.22566 0.99382 0.96341 0.87901 1.21785 0.99067 0.90558 1.03108 1.18730 0.91524 0.94235 0.92810 1.21174 1.30490 0.94766 1.08393 0.92590 1.24971 0.95117 0.98770 0.95161 1.69852 1.37474 1.33704 1.12147 0.86606 0.78792 0.84382 0.78293 1.20766 1.21284 1.19935 1.21794 0.98849 0.92918 1.01398 1.22115 0.82964 0.99124 1.01319 1.68338 1.40553 0.98239 1.22916 1.22681 0.86811 0.92642 0.87415 1.20541 0.97795 0.91986 1.03712 1.67884 1.06083 1.33901 1.25879 0.90295 0.91600 0.91572 0.91516 0.91533 0.83200 0.94015 0.91272 0.93267 0.88022 0.95739 0.92999 0.92369 0.92305 0.90868 0.93572 0.89698 0.89927 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.07 0.67 6.06 37.16 0.23 0.90 16 3 O -0.30 -4.12 10.13 -18.33 -0.19 -4.30 16 4 C 0.38 5.79 7.52 -16.79 -0.13 5.66 16 5 C -0.28 -4.49 9.22 -38.96 -0.36 -4.85 16 6 C 0.39 6.93 6.40 -154.72 -0.99 5.94 16 7 N -0.47 -8.69 4.68 -173.12 -0.81 -9.50 16 8 C 0.06 1.20 5.25 -3.84 -0.02 1.18 16 9 C -0.11 -2.43 5.12 -26.65 -0.14 -2.56 16 10 C 0.05 1.10 2.16 -91.64 -0.20 0.90 16 11 C -0.51 -13.67 8.56 -34.44 -0.29 -13.97 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 14 N -0.89 -24.83 11.37 55.43 0.63 -24.20 16 15 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 20 C 0.07 1.32 4.67 -3.84 -0.02 1.31 16 21 N -0.57 -9.64 8.74 -10.02 -0.09 -9.73 16 22 C 0.37 5.48 7.64 -157.27 -1.20 4.28 16 23 C -0.08 -0.83 10.32 36.00 0.37 -0.46 16 24 N -0.60 -8.94 9.27 -10.86 -0.10 -9.04 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 30 H 0.15 2.30 7.22 -52.49 -0.38 1.92 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.20 6.74 -51.93 -0.35 0.85 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 2.55 6.17 -51.93 -0.32 2.23 16 35 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.30 7.73 -51.93 -0.40 0.90 16 40 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -29.02 346.72 -9.86 -38.88 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.91 Total: 0.05 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.60 Total: -3.34 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.37 Total: -52.48 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.02 -9.86 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596189880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.902 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds