Wall clock time and date at job start Tue Mar 31 2020 06:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35545 * 116.99818 * 180.02562 * 3 2 1 5 5 C 1.38923 * 120.46517 * 180.02562 * 4 3 2 6 6 C 1.39237 * 118.28721 * 179.97438 * 5 4 3 7 7 N 1.38606 * 120.49652 * 179.97438 * 6 5 4 8 8 C 1.46842 * 111.00324 * 304.20773 * 7 6 5 9 9 C 1.53029 * 109.52923 * 174.15985 * 8 7 6 10 10 C 1.53124 * 109.27968 * 59.17980 * 9 8 7 11 11 C 1.50699 * 109.52574 * 182.44382 * 10 9 8 12 12 H 1.07998 * 119.99754 * 119.68266 * 11 10 9 13 13 C 1.37875 * 119.99999 * 299.68576 * 11 10 9 14 14 N 1.31517 * 119.99943 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47852 * 89.99339 * 15 13 11 17 17 H 1.48503 * 109.47015 * 209.99847 * 15 13 11 18 18 H 1.48502 * 109.47146 * 329.99158 * 15 13 11 19 19 C 1.53123 * 109.15670 * 302.34799 * 10 9 8 20 20 C 1.46847 * 111.00138 * 179.97438 * 7 6 5 21 21 N 1.33153 * 119.00676 * 359.97438 * 6 5 4 22 22 C 1.31722 * 120.83253 * 0.02562 * 21 6 5 23 23 C 1.50698 * 119.05165 * 180.02562 * 22 21 6 24 24 N 1.31775 * 121.89677 * 359.73668 * 22 21 6 25 25 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47084 * 299.99957 * 1 2 3 27 27 H 1.08996 * 109.47090 * 59.99784 * 1 2 3 28 28 H 1.08999 * 109.47084 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47592 * 120.00144 * 2 1 3 30 30 H 1.07997 * 120.85677 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.46021 * 294.17912 * 8 7 6 32 32 H 1.09005 * 109.46310 * 54.14352 * 8 7 6 33 33 H 1.09007 * 109.50507 * 299.23916 * 9 8 7 34 34 H 1.08998 * 109.50801 * 179.12060 * 9 8 7 35 35 H 1.08995 * 109.51854 * 62.25111 * 10 9 8 36 36 H 0.96998 * 120.00055 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.50635 * 297.70843 * 19 10 9 38 38 H 1.08998 * 109.50025 * 177.59341 * 19 10 9 39 39 H 1.09001 * 109.46429 * 305.85983 * 20 7 6 40 40 H 1.09005 * 109.45755 * 65.82549 * 20 7 6 41 41 H 1.08996 * 109.47628 * 89.99686 * 23 22 21 42 42 H 1.09001 * 109.47045 * 209.99950 * 23 22 21 43 43 H 1.09006 * 109.46938 * 329.99396 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3501 1.5249 -0.0005 5 6 3.8915 2.8042 0.0000 6 6 5.2778 2.9341 -0.0001 7 7 5.8668 4.1888 -0.0001 8 6 5.3928 4.9926 -1.1338 9 6 5.9487 6.4139 -1.0211 10 6 7.4789 6.3593 -1.0146 11 6 8.0319 7.7506 -0.8434 12 1 8.6540 7.9834 0.0082 13 6 7.7436 8.7264 -1.7738 14 7 6.9863 8.4427 -2.8110 15 14 8.4296 10.4508 -1.5620 16 1 9.7483 10.5456 -2.2380 17 1 7.4930 11.4335 -2.1640 18 1 8.5926 10.7445 -0.1155 19 6 7.9453 5.4768 0.1466 20 6 7.3314 4.0826 0.0004 21 7 6.0292 1.8348 -0.0001 22 6 5.4765 0.6392 -0.0005 23 6 6.3652 -0.5778 0.0001 24 7 4.1688 0.4766 0.0041 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2536 3.6757 0.0004 31 1 5.7336 4.5423 -2.0661 32 1 4.3033 5.0270 -1.1244 33 1 5.5969 6.8699 -0.0955 34 1 5.6093 7.0060 -1.8710 35 1 7.8323 5.9391 -1.9562 36 1 6.7838 9.1291 -3.4658 37 1 7.6250 5.9179 1.0905 38 1 9.0324 5.3992 0.1309 39 1 7.6498 3.4561 0.8336 40 1 7.6635 3.6364 -0.9370 41 1 6.5788 -0.8713 1.0278 42 1 5.8611 -1.3961 -0.5142 43 1 7.2986 -0.3464 -0.5132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596189880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:52 Heat of formation + Delta-G solvation = -11.093458 kcal Electronic energy + Delta-G solvation = -23327.977344 eV Core-core repulsion = 19986.633086 eV Total energy + Delta-G solvation = -3341.344258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.45538 -40.39785 -39.29185 -36.25962 -34.11416 -34.05583 -32.38713 -31.87129 -31.62672 -29.38065 -27.86479 -25.26167 -24.46044 -23.94030 -23.35332 -22.50562 -20.57918 -19.53169 -18.83062 -18.42744 -17.50784 -17.01263 -16.54134 -16.44787 -16.15432 -15.71607 -15.34813 -15.09401 -14.78821 -14.62709 -14.32346 -14.09831 -14.07269 -13.44962 -13.29127 -13.21226 -13.17919 -12.92653 -12.77244 -12.61333 -12.36199 -12.13664 -12.07282 -11.96480 -11.78308 -11.59383 -11.28345 -10.88748 -10.74491 -10.47340 -10.40428 -10.26196 -9.46980 -8.08326 -6.20752 -0.09738 0.10019 1.42720 1.44229 1.53852 1.72428 2.38173 2.45180 2.71969 2.94714 3.19532 3.24472 3.86130 4.03632 4.06193 4.10776 4.13381 4.21603 4.30318 4.38631 4.42518 4.49144 4.57212 4.63229 4.69079 4.75165 4.78926 4.89377 4.93187 4.93364 5.00297 5.13720 5.16861 5.21203 5.28944 5.48526 5.51057 5.65469 5.92158 5.97855 6.07937 6.10705 6.19498 6.38817 6.89417 7.08792 7.47187 8.96817 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.003411 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.351194 B = 8205.660973 C = 9031.920389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.309 6.309 4 C 0.377 3.623 5 C -0.286 4.286 6 C 0.380 3.620 7 N -0.472 5.472 8 C 0.076 3.924 9 C -0.096 4.096 10 C 0.042 3.958 11 C -0.531 4.531 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.917 5.917 15 Si 0.952 3.048 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.102 4.102 20 C 0.084 3.916 21 N -0.589 5.589 22 C 0.367 3.633 23 C -0.078 4.078 24 N -0.599 5.599 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.074 0.926 35 H -0.006 1.006 36 H 0.261 0.739 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -18.821 5.180 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.214 6.214 4 C 0.192 3.808 5 C -0.313 4.313 6 C 0.142 3.858 7 N -0.188 5.188 8 C -0.049 4.049 9 C -0.134 4.134 10 C 0.024 3.976 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.778 3.222 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.194 1.194 19 C -0.140 4.140 20 C -0.043 4.043 21 N -0.316 5.316 22 C 0.098 3.902 23 C -0.136 4.136 24 N -0.333 5.333 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.012 0.988 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.809 -18.973 5.444 21.616 hybrid contribution 0.013 1.547 -0.690 1.694 sum -8.797 -17.427 4.754 20.091 Atomic orbital electron populations 1.21852 0.90752 1.04509 1.03361 1.22938 0.96427 0.79370 1.02819 1.86243 1.15546 1.33013 1.86581 1.19789 0.84788 0.89376 0.86860 1.21243 0.94732 0.97777 1.17506 1.20043 0.89591 0.89255 0.86867 1.58785 1.10046 1.08615 1.41353 1.22301 1.00268 0.94297 0.88016 1.21509 0.98140 0.92436 1.01346 1.18696 0.92446 0.93754 0.92720 1.21526 1.30702 0.96239 1.08399 0.92884 1.25706 0.95441 1.02363 0.94952 1.69984 1.38255 1.34711 1.12697 0.85641 0.78137 0.80016 0.78358 1.20331 1.20962 1.19402 1.21642 0.99333 0.93482 0.99532 1.21937 0.83226 0.97670 1.01437 1.68361 1.40894 0.98709 1.23606 1.23567 0.87347 0.93223 0.86020 1.20702 0.97272 0.90464 1.05179 1.68020 1.06146 1.33489 1.25656 0.87731 0.91602 0.91704 0.91355 0.91235 0.82777 0.95014 0.89339 0.94055 0.90730 0.98777 0.93011 0.92649 0.91708 0.89477 0.94316 0.87868 0.88154 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.06 1.09 6.06 71.98 0.44 1.52 16 3 O -0.31 -7.99 10.13 -88.50 -0.90 -8.88 16 4 C 0.38 11.08 7.52 84.68 0.64 11.72 16 5 C -0.29 -9.09 9.22 22.67 0.21 -8.88 16 6 C 0.38 13.09 6.40 133.00 0.85 13.94 16 7 N -0.47 -17.52 4.68 -701.64 -3.28 -20.80 16 8 C 0.08 2.97 5.25 86.32 0.45 3.42 16 9 C -0.10 -4.48 5.12 30.65 0.16 -4.32 16 10 C 0.04 2.11 2.16 -11.46 -0.02 2.08 16 11 C -0.53 -28.98 8.56 25.60 0.22 -28.76 16 12 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 13 C 0.01 0.76 5.31 84.65 0.45 1.21 16 14 N -0.92 -52.14 11.37 21.45 0.24 -51.90 16 15 Si 0.95 43.36 29.54 68.60 2.03 45.38 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 C -0.10 -4.24 5.32 30.65 0.16 -4.08 16 20 C 0.08 3.10 4.67 86.32 0.40 3.50 16 21 N -0.59 -19.06 8.74 -185.62 -1.62 -20.69 16 22 C 0.37 10.06 7.64 138.78 1.06 11.12 16 23 C -0.08 -1.37 10.32 71.24 0.73 -0.63 16 24 N -0.60 -16.65 9.27 -300.83 -2.79 -19.44 16 25 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 29 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 30 H 0.15 4.63 7.22 -2.91 -0.02 4.61 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 3.08 6.74 -2.38 -0.02 3.06 16 33 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.07 3.89 6.17 -2.39 -0.01 3.88 16 35 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.09 3.00 7.73 -2.39 -0.02 2.98 16 40 H 0.04 1.48 8.12 -2.38 -0.02 1.47 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -62.51 346.72 1.15 -61.36 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.99 Total: 14.23 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 6.49 Total: 0.74 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -7.45 Total: -112.82 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.90 Total: -8.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -62.51 1.15 -61.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596189880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.263 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds