Wall clock time and date at job start Tue Mar 31 2020 06:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47252 * 2 1 4 4 C 1.35549 * 117.00115 * 180.02562 * 3 2 1 5 5 C 1.38915 * 120.46566 * 180.25176 * 4 3 2 6 6 C 1.39243 * 118.28313 * 180.25962 * 5 4 3 7 7 N 1.38604 * 120.49337 * 179.76474 * 6 5 4 8 8 C 1.46845 * 111.00455 * 55.76815 * 7 6 5 9 9 C 1.53034 * 109.52662 * 174.15745 * 8 7 6 10 10 C 1.53121 * 109.27653 * 59.18031 * 9 8 7 11 11 C 1.53124 * 109.16108 * 302.34293 * 10 9 8 12 12 H 1.08998 * 109.50166 * 297.67663 * 11 10 9 13 13 C 1.50701 * 109.50158 * 177.59378 * 11 10 9 14 14 H 1.08002 * 119.99761 * 240.07651 * 13 11 10 15 15 C 1.37871 * 119.99694 * 60.36214 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.46852 * 110.99731 * 291.51186 * 7 6 5 22 22 N 1.33149 * 119.00901 * 359.48996 * 6 5 4 23 23 C 1.31732 * 120.83081 * 0.24755 * 22 6 5 24 24 C 1.50698 * 119.05078 * 179.97438 * 23 22 6 25 25 N 1.31773 * 121.89094 * 0.02664 * 23 22 6 26 26 H 1.09000 * 109.47804 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47384 * 300.00324 * 1 2 3 28 28 H 1.09008 * 109.47344 * 59.99990 * 1 2 3 29 29 H 1.09001 * 109.46663 * 239.99794 * 2 1 3 30 30 H 1.09001 * 109.46707 * 120.00044 * 2 1 3 31 31 H 1.08004 * 120.85948 * 0.02656 * 5 4 3 32 32 H 1.09003 * 109.46148 * 54.13951 * 8 7 6 33 33 H 1.09004 * 109.46123 * 294.17905 * 8 7 6 34 34 H 1.09000 * 109.50557 * 299.24044 * 9 8 7 35 35 H 1.09001 * 109.50809 * 179.12036 * 9 8 7 36 36 H 1.09007 * 109.52292 * 182.44492 * 10 9 8 37 37 H 1.08997 * 109.57534 * 62.28174 * 10 9 8 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.42321 * 65.80787 * 21 7 6 40 40 H 1.08995 * 109.49687 * 305.84502 * 21 7 6 41 41 H 1.09003 * 109.46913 * 90.00564 * 24 23 22 42 42 H 1.09001 * 109.47011 * 209.99778 * 24 23 22 43 43 H 1.08994 * 109.47204 * 330.00467 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3502 1.5248 -0.0005 5 6 3.8916 2.8041 0.0047 6 6 5.2779 2.9339 -0.0017 7 7 5.8669 4.1885 -0.0018 8 6 5.3979 4.9902 1.1357 9 6 6.1739 6.3082 1.1870 10 6 5.9598 7.0722 -0.1226 11 6 6.4114 6.1966 -1.2948 12 1 7.4772 5.9876 -1.2035 13 6 6.1493 6.9179 -2.5918 14 1 5.4917 6.4814 -3.3291 15 6 6.7535 8.1321 -2.8396 16 7 7.5542 8.6636 -1.9418 17 14 6.4348 9.0225 -4.4505 18 1 5.5044 8.2197 -5.2841 19 1 5.8300 10.3498 -4.1713 20 1 7.7169 9.2057 -5.1770 21 6 5.6293 4.8813 -1.2746 22 7 6.0293 1.8347 -0.0021 23 6 5.4765 0.6389 -0.0015 24 6 6.3652 -0.5781 -0.0026 25 7 4.1688 0.4766 -0.0010 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2536 3.6756 0.0097 32 1 5.5596 4.4372 2.0610 33 1 4.3345 5.1991 1.0188 34 1 7.2359 6.1005 1.3177 35 1 5.8147 6.9098 2.0220 36 1 6.5454 7.9915 -0.1080 37 1 4.9032 7.3151 -0.2353 38 1 7.9796 9.5176 -2.1163 39 1 4.5647 5.0900 -1.3805 40 1 5.9592 4.2499 -2.0995 41 1 6.5806 -0.8716 1.0249 42 1 5.8601 -1.3964 -0.5158 43 1 7.2976 -0.3467 -0.5174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596324706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:56 Heat of formation + Delta-G solvation = 10.307805 kcal Electronic energy + Delta-G solvation = -23463.673218 eV Core-core repulsion = 20123.256989 eV Total energy + Delta-G solvation = -3340.416230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28358 -39.06232 -38.07903 -34.44264 -33.07655 -32.55046 -31.32168 -30.63003 -29.97263 -28.31338 -25.03186 -24.64153 -23.37858 -22.92975 -21.73418 -21.22158 -18.85344 -18.36392 -17.60023 -16.55626 -16.35847 -15.57551 -15.29295 -15.05150 -14.63340 -14.50855 -14.12533 -13.71271 -13.38010 -13.31950 -12.92343 -12.70660 -12.69816 -12.52506 -12.39890 -12.11795 -11.88562 -11.81070 -11.11529 -10.99292 -10.83404 -10.77038 -10.71319 -10.19908 -10.06665 -9.82974 -9.59677 -9.42484 -9.18468 -8.94274 -8.76591 -8.35375 -8.00819 -6.00798 -4.07257 0.96199 1.24900 2.75592 3.29138 3.37362 3.40823 3.61848 3.76747 3.91294 4.42522 4.70657 4.74973 4.79413 4.93786 5.12738 5.25106 5.29337 5.32171 5.42669 5.48994 5.50503 5.56013 5.57394 5.64797 5.77868 5.80118 5.93485 6.04589 6.16949 6.28583 6.38263 6.58269 6.63506 6.78936 6.92105 7.08370 7.17425 7.31791 7.40699 7.65222 7.72902 8.01671 8.11042 8.30341 8.40868 8.96115 9.57391 11.05400 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.003811 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.263574 B = 7346.033568 C = 7761.583285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.303 6.303 4 C 0.371 3.629 5 C -0.284 4.284 6 C 0.404 3.596 7 N -0.499 5.499 8 C 0.071 3.929 9 C -0.116 4.116 10 C -0.113 4.113 11 C 0.056 3.944 12 H 0.039 0.961 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.079 3.921 22 N -0.523 5.523 23 C 0.360 3.640 24 C -0.082 4.082 25 N -0.588 5.588 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -15.983 6.493 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.208 6.208 4 C 0.185 3.815 5 C -0.310 4.310 6 C 0.168 3.832 7 N -0.222 5.222 8 C -0.055 4.055 9 C -0.154 4.154 10 C -0.151 4.151 11 C 0.037 3.963 12 H 0.057 0.943 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.046 4.046 22 N -0.244 5.244 23 C 0.092 3.908 24 C -0.140 4.140 25 N -0.320 5.320 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.151 -16.448 6.563 19.495 hybrid contribution -1.613 1.173 -0.925 2.198 sum -9.765 -15.275 5.639 18.986 Atomic orbital electron populations 1.21829 0.92894 1.02895 1.03457 1.22652 0.94826 0.80909 1.02663 1.86254 1.16573 1.30928 1.87031 1.19848 0.84025 0.89613 0.87975 1.22541 0.97811 0.97150 1.13509 1.19925 0.85959 0.91695 0.85616 1.58858 1.58166 0.98999 1.06207 1.22146 0.97318 0.94937 0.91126 1.21696 1.00195 0.93710 0.99813 1.21697 0.99883 1.01362 0.92123 1.18703 0.95810 0.87671 0.94067 0.94252 1.21118 1.28154 1.04499 1.01682 0.92691 1.24914 0.94876 0.97278 0.96646 1.69890 1.30296 1.18393 1.33936 0.86549 0.78044 0.79592 0.83884 1.19851 1.21039 1.20989 1.22478 0.98951 0.97259 0.85894 1.68064 1.40921 0.97707 1.17673 1.22872 0.86613 0.92893 0.88444 1.20558 0.97889 0.91733 1.03828 1.67886 1.06414 1.34032 1.23621 0.90232 0.91613 0.91533 0.91432 0.91491 0.83386 0.91998 0.94620 0.91570 0.92742 0.88691 0.94805 0.93007 0.95089 0.91803 0.89617 0.89837 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.67 6.06 37.16 0.23 0.89 16 3 O -0.30 -4.20 10.13 -18.34 -0.19 -4.38 16 4 C 0.37 5.79 7.52 -16.79 -0.13 5.66 16 5 C -0.28 -4.72 8.80 -38.96 -0.34 -5.07 16 6 C 0.40 7.40 5.71 -154.72 -0.88 6.52 16 7 N -0.50 -9.82 4.70 -173.11 -0.81 -10.63 16 8 C 0.07 1.26 5.05 -3.84 -0.02 1.25 16 9 C -0.12 -2.20 6.09 -26.65 -0.16 -2.37 16 10 C -0.11 -2.58 5.03 -26.60 -0.13 -2.71 16 11 C 0.06 1.39 2.26 -91.69 -0.21 1.19 16 12 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.52 -13.95 8.56 -34.44 -0.29 -14.24 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 16 N -0.89 -24.87 11.36 55.43 0.63 -24.24 16 17 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.08 1.71 4.44 -3.83 -0.02 1.69 16 22 N -0.52 -9.35 10.36 -10.02 -0.10 -9.45 16 23 C 0.36 5.43 7.64 -157.27 -1.20 4.23 16 24 C -0.08 -0.85 10.32 36.00 0.37 -0.48 16 25 N -0.59 -8.80 9.27 -10.86 -0.10 -8.91 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 31 H 0.15 2.36 7.25 -52.48 -0.38 1.97 16 32 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.04 0.60 7.18 -51.93 -0.37 0.23 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.03 0.65 7.85 -51.93 -0.41 0.25 16 40 H 0.06 1.42 8.10 -51.93 -0.42 1.00 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -29.66 348.11 -9.79 -39.44 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.93 Total: -0.55 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.51 Total: -2.56 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.39 Total: -53.23 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.19 Total: -4.38 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.66 -9.79 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596324706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.753 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds