Wall clock time and date at job start Tue Mar 31 2020 06:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42893 * 109.47252 * 2 1 4 4 C 1.35549 * 117.00115 * 180.02562 * 3 2 1 5 5 C 1.38915 * 120.46566 * 180.25176 * 4 3 2 6 6 C 1.39243 * 118.28313 * 180.25962 * 5 4 3 7 7 N 1.38604 * 120.49337 * 179.76474 * 6 5 4 8 8 C 1.46845 * 111.00455 * 55.76815 * 7 6 5 9 9 C 1.53034 * 109.52662 * 174.15745 * 8 7 6 10 10 C 1.53121 * 109.27653 * 59.18031 * 9 8 7 11 11 C 1.53124 * 109.16108 * 302.34293 * 10 9 8 12 12 H 1.08998 * 109.50166 * 297.67663 * 11 10 9 13 13 C 1.50701 * 109.50158 * 177.59378 * 11 10 9 14 14 H 1.08002 * 119.99761 * 240.07651 * 13 11 10 15 15 C 1.37871 * 119.99694 * 60.36214 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.46852 * 110.99731 * 291.51186 * 7 6 5 22 22 N 1.33149 * 119.00901 * 359.48996 * 6 5 4 23 23 C 1.31732 * 120.83081 * 0.24755 * 22 6 5 24 24 C 1.50698 * 119.05078 * 179.97438 * 23 22 6 25 25 N 1.31773 * 121.89094 * 0.02664 * 23 22 6 26 26 H 1.09000 * 109.47804 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47384 * 300.00324 * 1 2 3 28 28 H 1.09008 * 109.47344 * 59.99990 * 1 2 3 29 29 H 1.09001 * 109.46663 * 239.99794 * 2 1 3 30 30 H 1.09001 * 109.46707 * 120.00044 * 2 1 3 31 31 H 1.08004 * 120.85948 * 0.02656 * 5 4 3 32 32 H 1.09003 * 109.46148 * 54.13951 * 8 7 6 33 33 H 1.09004 * 109.46123 * 294.17905 * 8 7 6 34 34 H 1.09000 * 109.50557 * 299.24044 * 9 8 7 35 35 H 1.09001 * 109.50809 * 179.12036 * 9 8 7 36 36 H 1.09007 * 109.52292 * 182.44492 * 10 9 8 37 37 H 1.08997 * 109.57534 * 62.28174 * 10 9 8 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.42321 * 65.80787 * 21 7 6 40 40 H 1.08995 * 109.49687 * 305.84502 * 21 7 6 41 41 H 1.09003 * 109.46913 * 90.00564 * 24 23 22 42 42 H 1.09001 * 109.47011 * 209.99778 * 24 23 22 43 43 H 1.08994 * 109.47204 * 330.00467 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3502 1.5248 -0.0005 5 6 3.8916 2.8041 0.0047 6 6 5.2779 2.9339 -0.0017 7 7 5.8669 4.1885 -0.0018 8 6 5.3979 4.9902 1.1357 9 6 6.1739 6.3082 1.1870 10 6 5.9598 7.0722 -0.1226 11 6 6.4114 6.1966 -1.2948 12 1 7.4772 5.9876 -1.2035 13 6 6.1493 6.9179 -2.5918 14 1 5.4917 6.4814 -3.3291 15 6 6.7535 8.1321 -2.8396 16 7 7.5542 8.6636 -1.9418 17 14 6.4348 9.0225 -4.4505 18 1 5.5044 8.2197 -5.2841 19 1 5.8300 10.3498 -4.1713 20 1 7.7169 9.2057 -5.1770 21 6 5.6293 4.8813 -1.2746 22 7 6.0293 1.8347 -0.0021 23 6 5.4765 0.6389 -0.0015 24 6 6.3652 -0.5781 -0.0026 25 7 4.1688 0.4766 -0.0010 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2536 3.6756 0.0097 32 1 5.5596 4.4372 2.0610 33 1 4.3345 5.1991 1.0188 34 1 7.2359 6.1005 1.3177 35 1 5.8147 6.9098 2.0220 36 1 6.5454 7.9915 -0.1080 37 1 4.9032 7.3151 -0.2353 38 1 7.9796 9.5176 -2.1163 39 1 4.5647 5.0900 -1.3805 40 1 5.9592 4.2499 -2.0995 41 1 6.5806 -0.8716 1.0249 42 1 5.8601 -1.3964 -0.5158 43 1 7.2976 -0.3467 -0.5174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596324706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:56 Heat of formation + Delta-G solvation = -8.189919 kcal Electronic energy + Delta-G solvation = -23464.475340 eV Core-core repulsion = 20123.256989 eV Total energy + Delta-G solvation = -3341.218351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51815 -40.36406 -39.39989 -36.12661 -34.29581 -34.08632 -32.39801 -31.90959 -31.74860 -29.37377 -27.00599 -26.06452 -24.46125 -23.96195 -23.36357 -22.68038 -20.46091 -19.57403 -19.02174 -18.16418 -17.56705 -17.11060 -16.60720 -16.53705 -16.17642 -15.57969 -15.51983 -15.23348 -14.70408 -14.45267 -14.33849 -14.22032 -14.12489 -13.49520 -13.46410 -13.21156 -13.09617 -12.87962 -12.71086 -12.66943 -12.57651 -12.00479 -11.96243 -11.91338 -11.83108 -11.48137 -11.16564 -11.03287 -10.73949 -10.63340 -10.40380 -10.13705 -9.51909 -8.09121 -6.23286 -0.28848 0.00400 1.41169 1.43294 1.54173 1.70763 2.24938 2.46150 2.55127 2.84849 3.18540 3.46308 3.71775 3.98617 4.03047 4.03097 4.12051 4.14776 4.22768 4.32312 4.39204 4.45922 4.53247 4.59680 4.73907 4.77168 4.80778 4.84393 4.89534 4.90350 4.98860 5.08239 5.16871 5.26122 5.31598 5.46720 5.62698 5.67212 5.78232 6.00410 6.04493 6.14245 6.23099 6.37209 6.87031 7.06321 7.44651 8.96038 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.003811 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.263574 B = 7346.033568 C = 7761.583285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.310 6.310 4 C 0.373 3.627 5 C -0.290 4.290 6 C 0.388 3.612 7 N -0.512 5.512 8 C 0.075 3.925 9 C -0.107 4.107 10 C -0.104 4.104 11 C 0.056 3.944 12 H 0.000 1.000 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.097 3.903 22 N -0.551 5.551 23 C 0.357 3.643 24 C -0.078 4.078 25 N -0.582 5.582 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 -17.564 6.897 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.186 3.814 5 C -0.317 4.317 6 C 0.153 3.847 7 N -0.235 5.235 8 C -0.051 4.051 9 C -0.145 4.145 10 C -0.143 4.143 11 C 0.037 3.963 12 H 0.018 0.982 13 C -0.576 4.576 14 H 0.069 0.931 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.780 3.220 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.207 1.207 21 C -0.029 4.029 22 N -0.272 5.272 23 C 0.089 3.911 24 C -0.137 4.137 25 N -0.314 5.314 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.694 -18.052 6.978 21.646 hybrid contribution -1.163 1.551 -1.036 2.199 sum -10.858 -16.501 5.942 20.627 Atomic orbital electron populations 1.21858 0.90679 1.04579 1.03360 1.22977 0.96524 0.79274 1.02946 1.86266 1.15460 1.33196 1.86489 1.19947 0.84898 0.89431 0.87128 1.22470 0.97129 0.97978 1.14116 1.19845 0.86695 0.91156 0.87053 1.58690 1.59302 0.99883 1.05618 1.22161 0.97605 0.94087 0.91279 1.21592 0.99931 0.94486 0.98498 1.21490 0.98922 1.00206 0.93648 1.18587 0.93899 0.89547 0.94223 0.98205 1.21449 1.28311 1.05089 1.02722 0.93093 1.25669 0.94661 0.98010 0.99796 1.70023 1.30886 1.18686 1.35508 0.85561 0.77929 0.78474 0.80007 1.19375 1.20335 1.20712 1.22067 0.98277 0.95602 0.86927 1.68078 1.41714 0.98464 1.18921 1.23746 0.87221 0.93287 0.86869 1.20735 0.97256 0.90251 1.05408 1.68029 1.06323 1.33533 1.23498 0.87629 0.91515 0.91803 0.91338 0.90970 0.83048 0.89983 0.93390 0.92808 0.89791 0.91691 0.94889 0.92909 0.94738 0.93329 0.87585 0.87834 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.06 1.06 6.06 71.98 0.44 1.50 16 3 O -0.31 -8.08 10.13 -88.55 -0.90 -8.98 16 4 C 0.37 11.13 7.52 84.68 0.64 11.77 16 5 C -0.29 -9.45 8.80 22.67 0.20 -9.25 16 6 C 0.39 14.08 5.71 133.00 0.76 14.84 16 7 N -0.51 -20.23 4.70 -701.60 -3.29 -23.52 16 8 C 0.07 2.58 5.05 86.33 0.44 3.01 16 9 C -0.11 -4.03 6.09 30.65 0.19 -3.84 16 10 C -0.10 -4.89 5.03 30.68 0.15 -4.73 16 11 C 0.06 2.89 2.26 -11.49 -0.03 2.86 16 12 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 13 C -0.54 -29.83 8.56 25.60 0.22 -29.62 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.02 0.99 5.31 84.65 0.45 1.44 16 16 N -0.91 -52.45 11.36 21.45 0.24 -52.20 16 17 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 C 0.10 4.30 4.44 86.33 0.38 4.68 16 22 N -0.55 -19.36 10.36 -185.61 -1.92 -21.28 16 23 C 0.36 10.21 7.64 138.77 1.06 11.27 16 24 C -0.08 -1.45 10.32 71.24 0.73 -0.71 16 25 N -0.58 -16.43 9.27 -300.84 -2.79 -19.22 16 26 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 30 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 31 H 0.15 4.70 7.25 -2.91 -0.02 4.68 16 32 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 33 H 0.05 1.54 7.18 -2.39 -0.02 1.53 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 3.43 6.17 -2.38 -0.01 3.42 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.03 1.48 7.85 -2.39 -0.02 1.46 16 40 H 0.05 2.25 8.10 -2.39 -0.02 2.23 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.17 348.11 0.72 -64.45 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.98 Total: 13.00 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.37 Total: 2.09 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -7.76 Total: -116.22 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.90 Total: -8.98 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.17 0.72 -64.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596324706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.260 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds