Wall clock time and date at job start Tue Mar 31 2020 07:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.03708 * 2 1 4 4 C 1.30834 * 108.20770 * 180.17238 * 3 2 1 5 5 C 1.39876 * 108.20073 * 359.58566 * 4 3 2 6 6 C 1.50702 * 126.03941 * 180.24343 * 5 4 3 7 7 C 1.52997 * 117.49610 * 8.77573 * 6 5 4 8 8 C 1.52999 * 117.49545 * 300.11387 * 6 5 4 9 9 C 1.34947 * 126.04040 * 179.71450 * 2 1 3 10 10 C 1.50709 * 126.12449 * 359.96194 * 9 2 1 11 11 N 1.46896 * 109.46923 * 90.04650 * 10 9 2 12 12 C 1.48526 * 111.00423 * 52.60181 * 11 10 9 13 13 C 1.54931 * 103.23090 * 159.71879 * 12 11 10 14 14 C 1.54595 * 102.92187 * 322.58967 * 13 12 11 15 15 O 1.42902 * 110.31042 * 263.04122 * 14 13 12 16 16 C 1.50698 * 110.31316 * 140.87278 * 14 13 12 17 17 H 1.08005 * 119.99976 * 244.28423 * 16 14 13 18 18 C 1.37880 * 120.00201 * 64.28290 * 16 14 13 19 19 N 1.31510 * 119.99690 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00047 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47301 * 119.99877 * 20 18 16 23 23 H 1.48498 * 109.47046 * 239.99960 * 20 18 16 24 24 C 1.47906 * 110.99737 * 169.99986 * 11 10 9 25 25 H 1.08995 * 109.47266 * 270.28769 * 1 2 3 26 26 H 1.08996 * 109.47009 * 30.29267 * 1 2 3 27 27 H 1.09011 * 109.46832 * 150.28859 * 1 2 3 28 28 H 1.08002 * 125.90318 * 179.85840 * 4 3 2 29 29 H 1.08993 * 115.54646 * 154.44467 * 6 5 4 30 30 H 1.08996 * 117.50074 * 359.97438 * 7 6 5 31 31 H 1.09006 * 117.49384 * 145.02361 * 7 6 5 32 32 H 1.09000 * 117.49884 * 214.97737 * 8 6 5 33 33 H 1.08998 * 117.50519 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46785 * 210.04441 * 10 9 2 35 35 H 1.09006 * 109.46990 * 330.04326 * 10 9 2 36 36 H 1.09001 * 110.67121 * 278.15594 * 12 11 10 37 37 H 1.09000 * 110.66643 * 41.28315 * 12 11 10 38 38 H 1.08998 * 110.72838 * 204.23068 * 13 12 11 39 39 H 1.09004 * 110.87825 * 81.01530 * 13 12 11 40 40 H 0.96704 * 113.99935 * 295.71695 * 15 14 13 41 41 H 0.97001 * 120.00071 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.91502 * 333.50484 * 24 11 10 43 43 H 1.08998 * 109.91475 * 94.79922 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0037 5 6 3.5437 -0.6665 0.0034 6 6 4.7681 -1.5452 0.0074 7 6 6.1241 -0.8664 0.2104 8 6 5.7385 -1.4099 -1.1677 9 6 2.2590 -1.0912 0.0054 10 6 1.7974 -2.5258 0.0134 11 7 1.6478 -2.9997 -1.3690 12 6 2.8854 -2.7545 -2.1527 13 6 2.7562 -3.7437 -3.3381 14 6 2.1149 -4.9879 -2.6818 15 8 3.1211 -5.9450 -2.3447 16 6 1.0970 -5.6019 -3.6081 17 1 0.0543 -5.6222 -3.3273 18 6 1.4968 -6.1376 -4.8140 19 7 2.7665 -6.1132 -5.1557 20 14 0.2349 -6.8980 -5.9624 21 1 -1.1142 -6.8009 -5.3494 22 1 0.2439 -6.1723 -7.2579 23 1 0.5720 -8.3258 -6.1925 24 6 1.4292 -4.4620 -1.4072 25 1 -0.3633 0.0052 1.0276 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5094 28 1 4.4054 1.3711 -0.0069 29 1 4.6328 -2.5379 0.4367 30 1 6.1307 0.2158 0.3407 31 1 6.8811 -1.4128 0.7730 32 1 6.2421 -2.3135 -1.5112 33 1 5.4912 -0.6856 -1.9439 34 1 2.5332 -3.1413 0.5308 35 1 0.8387 -2.5962 0.5275 36 1 2.9161 -1.7258 -2.5117 37 1 3.7694 -2.9816 -1.5568 38 1 3.7370 -3.9858 -3.7472 39 1 2.1059 -3.3382 -4.1133 40 1 3.5874 -6.3112 -3.1087 41 1 3.0478 -6.4898 -6.0042 42 1 1.8740 -4.9270 -0.5275 43 1 0.3613 -4.6770 -1.4444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597154655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:21 Heat of formation + Delta-G solvation = 62.758732 kcal Electronic energy + Delta-G solvation = -24401.218014 eV Core-core repulsion = 21063.076227 eV Total energy + Delta-G solvation = -3338.141787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33610 -38.31772 -36.93248 -34.99381 -32.93450 -32.07261 -31.35524 -29.06197 -27.92535 -26.66655 -25.48659 -23.89627 -22.80547 -22.22563 -20.69607 -19.94358 -19.40961 -18.91325 -17.11522 -16.37114 -15.81053 -15.49331 -14.90737 -14.84831 -14.53703 -14.20321 -14.04899 -13.88207 -13.27673 -12.99210 -12.69626 -12.55636 -12.19282 -11.92638 -11.90016 -11.50271 -11.37991 -11.24849 -11.07003 -10.93337 -10.78792 -10.54382 -10.43362 -10.38595 -10.23164 -10.16218 -9.93872 -9.23059 -9.11990 -8.59224 -8.16262 -8.01068 -7.75615 -6.20154 -4.26117 1.95862 2.64397 2.80682 3.22311 3.31054 3.35187 4.12759 4.31795 4.53632 4.63219 4.78282 5.01921 5.05069 5.08759 5.19157 5.21988 5.28228 5.39892 5.45533 5.51304 5.68170 5.72633 5.75509 5.89238 6.04714 6.10527 6.15063 6.24672 6.31714 6.32617 6.38199 6.40401 6.54873 6.76147 6.91812 7.07058 7.12637 7.28147 7.51991 7.62246 7.65765 7.84037 7.84263 8.15454 8.75463 9.41027 9.52678 10.87556 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.004804 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.099592 B = 5827.063932 C = 6608.957244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.363 5.363 3 N -0.303 5.303 4 C 0.050 3.950 5 C -0.204 4.204 6 C -0.069 4.069 7 C -0.180 4.180 8 C -0.169 4.169 9 C 0.111 3.889 10 C 0.104 3.896 11 N -0.510 5.510 12 C 0.036 3.964 13 C -0.119 4.119 14 C 0.245 3.755 15 O -0.595 6.595 16 C -0.528 4.528 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.054 3.946 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.177 0.823 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.038 0.962 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 9.730 9.684 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.144 5.144 3 N -0.124 5.124 4 C -0.135 4.135 5 C -0.215 4.215 6 C -0.088 4.088 7 C -0.217 4.217 8 C -0.206 4.206 9 C -0.017 4.017 10 C -0.025 4.025 11 N -0.235 5.235 12 C -0.091 4.091 13 C -0.157 4.157 14 C 0.205 3.795 15 O -0.405 6.405 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.073 4.073 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.194 0.806 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.351 11.115 9.938 14.914 hybrid contribution 0.705 -1.537 -0.971 1.950 sum 1.056 9.578 8.967 13.163 Atomic orbital electron populations 1.21869 0.74281 1.05068 1.02838 1.48275 1.06460 1.03139 1.56570 1.77291 1.01543 1.08249 1.25315 1.23554 0.95066 0.94300 1.00620 1.18968 0.92505 0.93025 1.17050 1.20145 0.87217 0.98214 1.03242 1.22987 0.97924 1.00340 1.00425 1.23021 1.02886 1.03242 0.91497 1.20657 0.90436 0.90212 1.00438 1.20862 1.00650 0.87968 0.93065 1.64981 1.35070 1.15422 1.08056 1.23380 0.90429 0.99387 0.95923 1.22977 1.00954 0.96072 0.95743 1.19323 0.85740 0.85647 0.88814 1.86073 1.54269 1.61167 1.39009 1.21732 0.94318 1.38287 1.02266 0.91985 1.25004 0.95561 0.95158 0.97612 1.69623 1.14749 1.46106 1.23476 0.86423 0.81585 0.78849 0.80452 1.19690 1.20937 1.20919 1.22898 1.00852 0.85003 0.98563 0.91230 0.89575 0.88510 0.80631 0.87714 0.89058 0.88947 0.88577 0.88840 0.92333 0.90219 0.92209 0.93256 0.91765 0.91775 0.76449 0.92400 0.94375 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 11.09 59.85 0.66 1.78 16 2 N -0.36 -5.33 4.01 -63.88 -0.26 -5.58 16 3 N -0.30 -4.68 12.58 30.63 0.39 -4.30 16 4 C 0.05 0.70 11.35 -17.36 -0.20 0.50 16 5 C -0.20 -2.96 5.07 -105.05 -0.53 -3.49 16 6 C -0.07 -0.92 4.00 -91.77 -0.37 -1.28 16 7 C -0.18 -1.96 10.03 -26.69 -0.27 -2.22 16 8 C -0.17 -2.14 9.30 -26.69 -0.25 -2.39 16 9 C 0.11 1.69 5.53 -82.26 -0.45 1.23 16 10 C 0.10 1.60 4.83 -4.97 -0.02 1.58 16 11 N -0.51 -9.46 5.39 -231.90 -1.25 -10.71 16 12 C 0.04 0.70 4.82 -1.90 -0.01 0.69 16 13 C -0.12 -2.73 5.49 -24.87 -0.14 -2.87 16 14 C 0.24 5.95 0.99 -90.42 -0.09 5.86 16 15 O -0.60 -15.21 12.93 -35.23 -0.46 -15.67 16 16 C -0.53 -13.97 8.10 -34.44 -0.28 -14.25 16 17 H 0.06 1.64 7.34 -52.48 -0.39 1.26 16 18 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16 19 N -0.90 -23.86 10.88 55.43 0.60 -23.25 16 20 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.05 1.13 6.17 -2.75 -0.02 1.11 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.07 7.66 -51.92 -0.40 0.67 16 28 H 0.18 1.94 7.20 -52.49 -0.38 1.56 16 29 H 0.10 1.46 7.31 -51.93 -0.38 1.08 16 30 H 0.09 0.89 6.98 -51.93 -0.36 0.53 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.90 7.00 -51.93 -0.36 0.53 16 35 H 0.08 1.08 7.72 -51.93 -0.40 0.68 16 36 H 0.06 1.17 7.75 -51.93 -0.40 0.77 16 37 H 0.05 0.93 5.08 -51.93 -0.26 0.66 16 38 H 0.06 1.54 8.05 -51.93 -0.42 1.12 16 39 H 0.06 1.59 7.86 -51.93 -0.41 1.18 16 40 H 0.38 10.05 7.05 45.56 0.32 10.37 16 41 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.04 0.78 7.39 -51.93 -0.38 0.40 16 43 H 0.08 1.66 7.39 -51.93 -0.38 1.28 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -28.81 339.49 -8.78 -37.59 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.85 Total: 13.28 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.05 Total: -12.06 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.52 Total: -43.85 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.46 Total: -15.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.81 -8.78 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597154655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.351 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds