Wall clock time and date at job start Tue Mar 31 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46804 * 2 1 4 4 C 1.34950 * 126.03814 * 125.00403 * 3 2 1 5 5 C 1.35311 * 107.74867 * 180.02562 * 4 3 2 6 6 C 1.39870 * 107.91994 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.89732 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47064 * 125.00016 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62638 * 359.71455 * 10 8 7 12 12 C 1.53627 * 108.54183 * 126.37295 * 11 10 8 13 13 C 1.53040 * 109.24108 * 54.85576 * 12 11 10 14 14 C 1.53042 * 109.53871 * 298.50936 * 13 12 11 15 15 H 1.09000 * 109.50220 * 301.42045 * 14 13 12 16 16 C 1.50698 * 109.49928 * 181.31422 * 14 13 12 17 17 H 1.08000 * 119.99906 * 0.17167 * 16 14 13 18 18 C 1.37879 * 119.99904 * 180.16396 * 16 14 13 19 19 N 1.31515 * 120.00001 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99841 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47353 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47308 * 119.99820 * 20 18 16 23 23 H 1.48504 * 109.47095 * 240.00075 * 20 18 16 24 24 C 1.46920 * 120.63268 * 180.02562 * 10 8 7 25 25 N 1.30837 * 108.20220 * 0.26104 * 6 5 4 26 26 H 1.09001 * 109.47160 * 60.00496 * 1 2 3 27 27 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47367 * 300.00066 * 1 2 3 29 29 H 1.09000 * 109.47367 * 239.99934 * 2 1 3 30 30 H 1.09000 * 109.46988 * 120.00028 * 2 1 3 31 31 H 1.08000 * 126.12610 * 359.95618 * 4 3 2 32 32 H 1.08007 * 126.04254 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47060 * 244.99979 * 7 6 5 34 34 H 1.09001 * 109.47380 * 5.00067 * 7 6 5 35 35 H 1.09005 * 109.58858 * 246.20434 * 11 10 8 36 36 H 1.08995 * 109.58867 * 6.63230 * 11 10 8 37 37 H 1.08999 * 109.63425 * 294.86802 * 12 11 10 38 38 H 1.08997 * 109.46146 * 174.73964 * 12 11 10 39 39 H 1.08995 * 109.46070 * 178.49571 * 13 12 11 40 40 H 1.08998 * 109.45156 * 58.52626 * 13 12 11 41 41 H 0.97003 * 119.99531 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58920 * 353.36599 * 24 10 8 43 43 H 1.08997 * 109.58981 * 113.79581 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8730 1.9212 0.8938 5 6 3.0711 3.2138 0.5464 6 6 2.3118 3.4726 -0.5994 7 6 2.2347 4.7886 -1.3297 8 6 2.5920 4.5806 -2.7789 9 8 2.8813 3.4730 -3.1792 10 7 2.5911 5.6257 -3.6299 11 6 2.2379 6.9726 -3.1609 12 6 3.3689 7.9372 -3.5488 13 6 3.6183 7.8420 -5.0558 14 6 4.0551 6.4196 -5.4135 15 1 4.9585 6.1660 -4.8589 16 6 4.3314 6.3351 -6.8925 17 1 4.2107 7.2093 -7.5152 18 6 4.7386 5.1420 -7.4507 19 7 4.8852 4.0774 -6.6926 20 14 5.0819 5.0375 -9.2839 21 1 4.8434 6.3635 -9.9086 22 1 6.4945 4.6346 -9.5009 23 1 4.1799 4.0314 -9.8999 24 6 2.9367 5.4387 -5.0456 25 7 1.6762 2.3763 -0.9248 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3183 1.4129 1.7364 32 1 3.7037 3.9208 1.0625 33 1 1.2218 5.1848 -1.2585 34 1 2.9334 5.4947 -0.8810 35 1 1.3064 7.2901 -3.6295 36 1 2.1196 6.9629 -2.0775 37 1 4.2789 7.6694 -3.0119 38 1 3.0812 8.9565 -3.2914 39 1 4.4020 8.5445 -5.3393 40 1 2.7009 8.0858 -5.5916 41 1 5.1720 3.2381 -7.0853 42 1 3.2796 4.4165 -5.2061 43 1 2.0609 5.6339 -5.6644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:13 Heat of formation + Delta-G solvation = 34.200550 kcal Electronic energy + Delta-G solvation = -23484.654478 eV Core-core repulsion = 20145.274316 eV Total energy + Delta-G solvation = -3339.380162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04695 -39.17446 -36.57741 -34.60717 -33.33374 -31.77819 -31.32760 -29.79695 -29.48311 -27.96357 -24.99816 -24.40260 -23.09289 -21.74315 -20.99788 -20.25294 -19.17144 -17.96067 -16.94748 -16.65692 -15.97635 -15.29580 -14.98918 -14.81402 -14.47093 -14.27228 -13.64878 -13.58634 -13.50761 -13.16523 -12.64645 -12.58103 -12.49881 -12.32646 -12.13823 -12.05903 -11.82626 -11.56838 -11.38196 -10.96357 -10.84412 -10.43874 -10.32033 -10.28909 -10.17254 -9.81625 -9.17421 -9.06304 -9.03983 -8.72705 -8.38840 -8.35651 -7.60358 -5.94053 -4.03019 2.08891 2.61811 2.95002 3.33222 3.41479 3.44489 3.45086 3.92652 4.42105 4.47334 4.80334 4.84267 4.91869 5.07679 5.18376 5.32777 5.35933 5.42372 5.44832 5.55295 5.61945 5.63726 5.74935 5.80823 5.94070 5.98408 6.06246 6.19025 6.24577 6.37838 6.66268 6.75133 6.81217 6.93887 7.04586 7.17085 7.25298 7.41932 7.71898 7.95227 7.97219 8.07580 8.38952 8.46320 8.99912 9.08497 9.62480 11.10970 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.004024 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.411970 B = 6956.836845 C = 8020.302601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.044 3.956 5 C -0.267 4.267 6 C 0.088 3.912 7 C -0.060 4.060 8 C 0.507 3.493 9 O -0.521 6.521 10 N -0.610 5.610 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.115 3.885 25 N -0.257 5.257 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.262 0.738 42 H 0.122 0.878 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.162 -1.465 17.319 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.159 5.159 4 C -0.101 4.101 5 C -0.296 4.296 6 C -0.080 4.080 7 C -0.102 4.102 8 C 0.293 3.707 9 O -0.397 6.397 10 N -0.344 5.344 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.006 4.006 25 N -0.079 5.079 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.139 0.861 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.814 -2.996 16.273 18.299 hybrid contribution 0.879 0.293 -0.347 0.990 sum -6.934 -2.703 15.926 17.579 Atomic orbital electron populations 1.22043 0.93990 1.02586 1.03580 1.21619 0.95946 0.77875 1.03516 1.48728 1.35840 1.10085 1.21240 1.22425 0.96410 0.94820 0.96459 1.21318 1.09668 0.96824 1.01808 1.21614 0.96991 0.94339 0.95013 1.20113 1.03975 0.92733 0.93400 1.20167 0.78597 0.84990 0.86969 1.90743 1.47288 1.23660 1.77965 1.48476 1.67603 1.06591 1.11743 1.21726 0.97730 0.83543 0.98561 1.22020 0.98372 0.97619 0.99166 1.21622 1.00235 1.00386 0.92592 1.18978 0.93921 0.88774 0.96256 0.95384 1.21126 1.46063 0.96007 0.92733 0.92370 1.25060 0.95176 0.95914 0.97906 1.69913 1.46138 1.00757 1.34876 0.86558 0.77879 0.78010 0.85688 1.19786 1.21048 1.21017 1.22230 0.97035 1.06097 0.75207 1.77426 1.23341 0.96149 1.10986 0.90905 0.90947 0.92303 0.89796 0.89007 0.81378 0.83745 0.88070 0.87603 0.92100 0.91104 0.92114 0.92330 0.93126 0.93242 0.92779 0.86060 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.09 37.16 0.38 -1.14 16 2 C 0.13 1.33 7.23 -4.04 -0.03 1.30 16 3 N -0.38 -5.35 3.68 -61.37 -0.23 -5.57 16 4 C 0.04 0.54 11.45 -17.22 -0.20 0.35 16 5 C -0.27 -3.69 10.72 -40.01 -0.43 -4.12 16 6 C 0.09 1.48 6.01 -82.40 -0.50 0.98 16 7 C -0.06 -0.93 4.62 -29.03 -0.13 -1.06 16 8 C 0.51 10.66 7.69 -10.98 -0.08 10.58 16 9 O -0.52 -13.63 14.98 5.56 0.08 -13.55 16 10 N -0.61 -12.55 2.97 -172.48 -0.51 -13.06 16 11 C 0.11 1.68 6.37 -3.48 -0.02 1.65 16 12 C -0.13 -2.14 6.10 -26.39 -0.16 -2.30 16 13 C -0.11 -2.22 5.10 -26.69 -0.14 -2.36 16 14 C 0.04 1.00 2.25 -91.63 -0.21 0.80 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.39 8.56 -34.44 -0.29 -14.69 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -26.40 11.39 55.43 0.63 -25.77 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.11 2.87 5.40 -3.69 -0.02 2.85 16 25 N -0.26 -4.68 11.77 33.67 0.40 -4.28 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.10 1.31 7.93 -51.93 -0.41 0.89 16 34 H 0.11 1.32 7.68 -51.93 -0.40 0.92 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 3.58 5.12 -51.93 -0.27 3.31 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -35.93 349.02 -8.16 -44.09 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.84 Total: 1.73 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.93 Total: -5.50 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.29 Total: -48.69 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.93 -8.16 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.286 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds