Wall clock time and date at job start Tue Mar 31 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46804 * 2 1 4 4 C 1.34950 * 126.03814 * 125.00403 * 3 2 1 5 5 C 1.35311 * 107.74867 * 180.02562 * 4 3 2 6 6 C 1.39870 * 107.91994 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.89732 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47064 * 125.00016 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62638 * 359.71455 * 10 8 7 12 12 C 1.53627 * 108.54183 * 126.37295 * 11 10 8 13 13 C 1.53040 * 109.24108 * 54.85576 * 12 11 10 14 14 C 1.53042 * 109.53871 * 298.50936 * 13 12 11 15 15 H 1.09000 * 109.50220 * 301.42045 * 14 13 12 16 16 C 1.50698 * 109.49928 * 181.31422 * 14 13 12 17 17 H 1.08000 * 119.99906 * 0.17167 * 16 14 13 18 18 C 1.37879 * 119.99904 * 180.16396 * 16 14 13 19 19 N 1.31515 * 120.00001 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99841 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47353 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47308 * 119.99820 * 20 18 16 23 23 H 1.48504 * 109.47095 * 240.00075 * 20 18 16 24 24 C 1.46920 * 120.63268 * 180.02562 * 10 8 7 25 25 N 1.30837 * 108.20220 * 0.26104 * 6 5 4 26 26 H 1.09001 * 109.47160 * 60.00496 * 1 2 3 27 27 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47367 * 300.00066 * 1 2 3 29 29 H 1.09000 * 109.47367 * 239.99934 * 2 1 3 30 30 H 1.09000 * 109.46988 * 120.00028 * 2 1 3 31 31 H 1.08000 * 126.12610 * 359.95618 * 4 3 2 32 32 H 1.08007 * 126.04254 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47060 * 244.99979 * 7 6 5 34 34 H 1.09001 * 109.47380 * 5.00067 * 7 6 5 35 35 H 1.09005 * 109.58858 * 246.20434 * 11 10 8 36 36 H 1.08995 * 109.58867 * 6.63230 * 11 10 8 37 37 H 1.08999 * 109.63425 * 294.86802 * 12 11 10 38 38 H 1.08997 * 109.46146 * 174.73964 * 12 11 10 39 39 H 1.08995 * 109.46070 * 178.49571 * 13 12 11 40 40 H 1.08998 * 109.45156 * 58.52626 * 13 12 11 41 41 H 0.97003 * 119.99531 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58920 * 353.36599 * 24 10 8 43 43 H 1.08997 * 109.58981 * 113.79581 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8730 1.9212 0.8938 5 6 3.0711 3.2138 0.5464 6 6 2.3118 3.4726 -0.5994 7 6 2.2347 4.7886 -1.3297 8 6 2.5920 4.5806 -2.7789 9 8 2.8813 3.4730 -3.1792 10 7 2.5911 5.6257 -3.6299 11 6 2.2379 6.9726 -3.1609 12 6 3.3689 7.9372 -3.5488 13 6 3.6183 7.8420 -5.0558 14 6 4.0551 6.4196 -5.4135 15 1 4.9585 6.1660 -4.8589 16 6 4.3314 6.3351 -6.8925 17 1 4.2107 7.2093 -7.5152 18 6 4.7386 5.1420 -7.4507 19 7 4.8852 4.0774 -6.6926 20 14 5.0819 5.0375 -9.2839 21 1 4.8434 6.3635 -9.9086 22 1 6.4945 4.6346 -9.5009 23 1 4.1799 4.0314 -9.8999 24 6 2.9367 5.4387 -5.0456 25 7 1.6762 2.3763 -0.9248 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3183 1.4129 1.7364 32 1 3.7037 3.9208 1.0625 33 1 1.2218 5.1848 -1.2585 34 1 2.9334 5.4947 -0.8810 35 1 1.3064 7.2901 -3.6295 36 1 2.1196 6.9629 -2.0775 37 1 4.2789 7.6694 -3.0119 38 1 3.0812 8.9565 -3.2914 39 1 4.4020 8.5445 -5.3393 40 1 2.7009 8.0858 -5.5916 41 1 5.1720 3.2381 -7.0853 42 1 3.2796 4.4165 -5.2061 43 1 2.0609 5.6339 -5.6644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597900516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:12 Heat of formation + Delta-G solvation = 9.970851 kcal Electronic energy + Delta-G solvation = -23485.705157 eV Core-core repulsion = 20145.274316 eV Total energy + Delta-G solvation = -3340.430841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10439 -40.77695 -38.26553 -35.57966 -35.27284 -33.48340 -32.50671 -31.43490 -30.63246 -29.11461 -26.97056 -25.94523 -24.09388 -23.37757 -21.96566 -21.73859 -20.58865 -19.46524 -18.51470 -17.97443 -17.71352 -16.68198 -16.41784 -16.34125 -16.11004 -15.22941 -15.10187 -14.90164 -14.81971 -14.40645 -14.38484 -14.10183 -13.84838 -13.47840 -13.46197 -13.24238 -12.94236 -12.92490 -12.80747 -12.61785 -12.27186 -12.21815 -12.19956 -11.75782 -11.59606 -11.36103 -11.07493 -10.91957 -10.59942 -10.49596 -10.10970 -9.40011 -9.31877 -8.11576 -6.29136 1.07456 1.37576 1.38873 1.51354 1.71689 1.81793 1.88649 2.37413 2.46104 3.16818 3.51956 3.84028 3.89804 4.06217 4.11157 4.18222 4.23142 4.33609 4.35134 4.40448 4.51638 4.64678 4.68871 4.78036 4.82380 4.86449 4.91229 4.93067 4.98024 5.14379 5.15840 5.24238 5.30040 5.34309 5.40867 5.55947 5.70711 5.77103 5.92316 6.02396 6.29821 6.34293 6.77130 6.85245 6.90326 7.40584 7.47742 8.91600 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.004024 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.411970 B = 6956.836845 C = 8020.302601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 N -0.383 5.383 4 C 0.054 3.946 5 C -0.284 4.284 6 C 0.062 3.938 7 C -0.047 4.047 8 C 0.497 3.503 9 O -0.587 6.587 10 N -0.613 5.613 11 C 0.101 3.899 12 C -0.126 4.126 13 C -0.106 4.106 14 C 0.039 3.961 15 H -0.014 1.014 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.258 1.258 22 H -0.282 1.282 23 H -0.284 1.284 24 C 0.127 3.873 25 N -0.318 5.318 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.217 0.783 32 H 0.170 0.830 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 0.148 19.729 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.001 3.999 3 N -0.166 5.166 4 C -0.092 4.092 5 C -0.313 4.313 6 C -0.105 4.105 7 C -0.088 4.088 8 C 0.285 3.715 9 O -0.466 6.466 10 N -0.346 5.346 11 C -0.021 4.021 12 C -0.164 4.164 13 C -0.144 4.144 14 C 0.020 3.980 15 H 0.004 0.996 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.783 3.217 21 H -0.182 1.182 22 H -0.207 1.207 23 H -0.210 1.210 24 C 0.004 3.996 25 N -0.141 5.141 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.233 0.767 32 H 0.188 0.812 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.395 -1.319 18.698 20.539 hybrid contribution 1.056 -0.258 -1.070 1.525 sum -7.338 -1.577 17.629 19.160 Atomic orbital electron populations 1.21976 0.93566 1.03863 1.01984 1.21991 0.96453 0.76447 1.05015 1.49074 1.36038 1.10675 1.20809 1.23218 0.94783 0.94602 0.96601 1.21720 1.09990 0.98217 1.01376 1.22000 0.97759 0.94489 0.96208 1.20160 1.06384 0.93542 0.88689 1.21253 0.77096 0.83921 0.89217 1.90708 1.50108 1.26329 1.79502 1.48525 1.67090 1.09080 1.09895 1.22163 0.98060 0.80244 1.01589 1.21989 0.98475 1.00416 0.95491 1.21523 1.00273 0.96413 0.96203 1.18905 0.92281 0.92279 0.94536 0.99629 1.21599 1.45352 0.96014 0.94399 0.91934 1.25934 0.95136 0.95578 1.02547 1.70131 1.47461 1.01184 1.36848 0.85504 0.77555 0.78466 0.80148 1.18162 1.20750 1.21039 1.21609 0.96328 1.03192 0.78430 1.77323 1.25589 0.97763 1.13435 0.94369 0.88202 0.91885 0.91182 0.84531 0.76682 0.81222 0.85184 0.83984 0.90426 0.86359 0.92738 0.87612 0.93035 0.92661 0.93348 0.91143 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.09 71.98 0.73 -2.06 16 2 C 0.12 2.31 7.23 86.38 0.62 2.93 16 3 N -0.38 -10.62 3.68 -348.07 -1.28 -11.90 16 4 C 0.05 1.19 11.45 83.54 0.96 2.15 16 5 C -0.28 -7.29 10.72 21.99 0.24 -7.06 16 6 C 0.06 2.04 6.01 43.10 0.26 2.30 16 7 C -0.05 -1.36 4.62 29.10 0.13 -1.22 16 8 C 0.50 21.29 7.69 87.66 0.67 21.97 16 9 O -0.59 -32.67 14.98 -3.02 -0.05 -32.71 16 10 N -0.61 -25.36 2.97 -817.98 -2.43 -27.78 16 11 C 0.10 2.81 6.37 86.51 0.55 3.36 16 12 C -0.13 -3.62 6.10 30.82 0.19 -3.44 16 13 C -0.11 -4.17 5.10 30.62 0.16 -4.01 16 14 C 0.04 2.04 2.25 -11.45 -0.03 2.02 16 15 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 16 C -0.54 -30.47 8.56 25.60 0.22 -30.25 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 18 C 0.01 0.41 5.30 84.66 0.45 0.86 16 19 N -0.92 -58.33 11.39 21.45 0.24 -58.08 16 20 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 C 0.13 6.68 5.40 86.38 0.47 7.14 16 25 N -0.32 -11.82 11.77 -47.38 -0.56 -12.38 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.14 1.34 8.07 -2.39 -0.02 1.32 16 31 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.13 2.97 7.93 -2.39 -0.02 2.96 16 34 H 0.14 3.02 7.68 -2.39 -0.02 3.00 16 35 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.12 2.21 5.93 -2.39 -0.01 2.20 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.07 4.47 5.12 -2.39 -0.01 4.46 16 43 H 0.03 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -88.13 349.02 4.56 -83.57 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.98 Total: 16.82 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.61 Total: -5.32 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.02 Total: -110.15 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.05 Total: -32.71 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -88.13 4.56 -83.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.536 kcal (2) G-P(sol) polarization free energy of solvation -88.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds