Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47333 * 2 1 4 4 C 1.34953 * 126.03298 * 125.00292 * 3 2 1 5 5 C 1.35326 * 107.74410 * 180.02562 * 4 3 2 6 6 C 1.39864 * 107.91649 * 0.02562 * 5 4 3 7 7 C 1.50709 * 125.89611 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47044 * 124.99638 * 7 6 5 9 9 O 1.21284 * 120.00087 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00162 * 180.02562 * 8 7 6 11 11 C 1.46933 * 120.62602 * 359.97327 * 10 8 7 12 12 C 1.53188 * 108.77495 * 233.63137 * 11 10 8 13 13 C 1.53034 * 109.31404 * 305.36890 * 12 11 10 14 14 C 1.53346 * 109.61010 * 61.37429 * 13 12 11 15 15 H 1.09002 * 109.47277 * 58.54691 * 14 13 12 16 16 C 1.50698 * 109.68835 * 178.74685 * 14 13 12 17 17 H 1.08009 * 119.99739 * 359.75029 * 16 14 13 18 18 C 1.37876 * 120.00334 * 179.75168 * 16 14 13 19 19 N 1.31517 * 119.99819 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47523 * 89.99881 * 20 18 16 22 22 H 1.48500 * 109.46942 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47413 * 329.99809 * 20 18 16 24 24 C 1.46919 * 120.63395 * 180.02562 * 10 8 7 25 25 N 1.30835 * 108.20676 * 0.25946 * 6 5 4 26 26 H 1.08993 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46418 * 299.99488 * 1 2 3 28 28 H 1.08994 * 109.46858 * 59.99222 * 1 2 3 29 29 H 1.09006 * 109.47229 * 240.00136 * 2 1 3 30 30 H 1.09003 * 109.47353 * 120.00412 * 2 1 3 31 31 H 1.08000 * 126.13137 * 0.03854 * 4 3 2 32 32 H 1.07991 * 126.03697 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46530 * 4.99988 * 7 6 5 34 34 H 1.08993 * 109.46840 * 244.99793 * 7 6 5 35 35 H 1.08994 * 109.58580 * 353.42544 * 11 10 8 36 36 H 1.09002 * 109.58042 * 113.84624 * 11 10 8 37 37 H 1.08994 * 109.49494 * 65.32533 * 12 11 10 38 38 H 1.09000 * 109.49460 * 185.41816 * 12 11 10 39 39 H 1.08999 * 109.45836 * 181.38851 * 13 12 11 40 40 H 1.09000 * 109.46169 * 301.34220 * 13 12 11 41 41 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58751 * 246.15665 * 24 10 8 43 43 H 1.08996 * 109.58750 * 6.43850 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8732 1.9209 0.8939 5 6 3.0715 3.2137 0.5464 6 6 2.3113 3.4728 -0.5987 7 6 2.2340 4.7890 -1.3288 8 6 2.5901 4.5810 -2.7782 9 8 2.8788 3.4733 -3.1789 10 7 2.5888 5.6263 -3.6292 11 6 2.2418 6.9742 -3.1585 12 6 1.1214 7.5317 -4.0420 13 6 1.5551 7.4702 -5.5084 14 6 1.8063 6.0117 -5.9100 15 1 0.8975 5.4303 -5.7544 16 6 2.2037 5.9462 -7.3621 17 1 2.2677 6.8527 -7.9459 18 6 2.4856 4.7292 -7.9456 19 7 2.4071 3.6254 -7.2349 20 14 2.9789 4.6482 -9.7454 21 1 4.4548 4.7645 -9.8599 22 1 2.5382 3.3524 -10.3215 23 1 2.3356 5.7633 -10.4857 24 6 2.9332 5.4393 -5.0451 25 7 1.6751 2.3768 -0.9237 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3194 1.4123 1.7357 32 1 3.7047 3.9203 1.0621 33 1 2.9333 5.4947 -0.8804 34 1 1.2213 5.1854 -1.2567 35 1 1.9009 6.9237 -2.1245 36 1 3.1165 7.6211 -3.2259 37 1 0.2190 6.9363 -3.9042 38 1 0.9207 8.5667 -3.7652 39 1 0.7695 7.8891 -6.1372 40 1 2.4713 8.0457 -5.6406 41 1 2.6050 2.7692 -7.6454 42 1 3.8644 5.9607 -5.2667 43 1 3.0508 4.3762 -5.2553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = 34.369873 kcal Electronic energy + Delta-G solvation = -23524.387844 eV Core-core repulsion = 20185.015024 eV Total energy + Delta-G solvation = -3339.372820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04505 -39.17435 -36.57517 -34.59011 -33.32834 -31.77278 -31.31924 -29.80259 -29.48617 -27.95207 -24.99553 -24.39701 -23.07817 -21.73290 -20.99252 -20.25544 -19.15769 -17.97978 -16.93234 -16.62676 -15.99288 -15.28323 -14.99586 -14.80873 -14.46544 -14.25049 -13.64820 -13.59632 -13.43257 -13.17117 -12.76516 -12.56239 -12.38302 -12.32866 -12.17786 -12.04416 -11.78672 -11.56232 -11.35892 -10.95162 -10.82995 -10.46252 -10.32577 -10.24354 -10.17086 -9.81577 -9.17444 -9.06479 -9.02192 -8.72689 -8.38232 -8.35991 -7.60291 -5.93036 -4.02289 2.09552 2.62904 2.95122 3.34297 3.41486 3.43367 3.44450 3.93815 4.43919 4.47728 4.81184 4.84931 4.94222 5.10074 5.17846 5.34509 5.36250 5.41036 5.47486 5.56785 5.65348 5.65988 5.75101 5.79740 5.94119 6.01691 6.06355 6.18695 6.25684 6.38401 6.66913 6.75529 6.81254 6.93896 7.04425 7.17573 7.25311 7.42233 7.72294 7.96068 7.98610 8.08254 8.39020 8.46996 9.00276 9.08653 9.63042 11.11864 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.004150 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.221340 B = 6745.639098 C = 7810.633708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.375 5.375 4 C 0.043 3.957 5 C -0.268 4.268 6 C 0.086 3.914 7 C -0.060 4.060 8 C 0.507 3.493 9 O -0.521 6.521 10 N -0.610 5.610 11 C 0.109 3.891 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.114 3.886 25 N -0.253 5.253 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 -0.399 18.631 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.158 5.158 4 C -0.102 4.102 5 C -0.298 4.298 6 C -0.082 4.082 7 C -0.102 4.102 8 C 0.293 3.707 9 O -0.397 6.397 10 N -0.344 5.344 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.006 4.006 25 N -0.074 5.074 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.723 -1.940 17.581 17.772 hybrid contribution 0.924 0.320 -0.330 1.032 sum -0.799 -1.621 17.251 17.346 Atomic orbital electron populations 1.22046 0.93922 1.02635 1.03662 1.21627 0.96036 0.77819 1.03473 1.48763 1.35712 1.10124 1.21235 1.22429 0.96488 0.94841 0.96460 1.21300 1.09824 0.96796 1.01860 1.21623 0.97065 0.94389 0.95081 1.20109 1.04103 0.92694 0.93309 1.20169 0.78656 0.84913 0.86979 1.90743 1.47522 1.23466 1.77925 1.48474 1.67727 1.06681 1.11514 1.21634 0.97893 0.84571 0.97420 1.21943 0.98143 0.99532 0.97624 1.21669 0.99799 1.00449 0.92935 1.19011 0.94897 0.89844 0.94132 0.95381 1.21075 1.47423 0.92870 0.94621 0.92431 1.25056 0.95287 0.95835 0.97856 1.69905 1.47956 0.97958 1.35793 0.86610 0.78762 0.77364 0.85356 1.20677 1.21259 1.19942 1.22210 0.97387 1.06113 0.74906 1.77496 1.22992 0.96114 1.10845 0.90921 0.92320 0.90777 0.89762 0.89039 0.81414 0.83807 0.87732 0.87947 0.91130 0.92090 0.92154 0.92291 0.93154 0.93243 0.92718 0.94269 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.09 37.16 0.38 -1.24 16 2 C 0.13 1.37 7.23 -4.04 -0.03 1.34 16 3 N -0.38 -5.40 3.68 -61.36 -0.23 -5.63 16 4 C 0.04 0.53 11.45 -17.22 -0.20 0.33 16 5 C -0.27 -3.63 10.72 -40.01 -0.43 -4.06 16 6 C 0.09 1.44 6.01 -82.40 -0.50 0.95 16 7 C -0.06 -0.93 4.62 -29.03 -0.13 -1.06 16 8 C 0.51 10.66 7.69 -10.98 -0.08 10.58 16 9 O -0.52 -13.62 14.98 5.55 0.08 -13.54 16 10 N -0.61 -12.55 2.97 -172.80 -0.51 -13.06 16 11 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 12 C -0.13 -2.18 6.08 -26.62 -0.16 -2.34 16 13 C -0.11 -2.24 5.13 -26.53 -0.14 -2.38 16 14 C 0.04 1.02 2.26 -91.51 -0.21 0.81 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.45 8.57 -34.44 -0.30 -14.75 16 17 H 0.06 1.56 7.75 -52.48 -0.41 1.15 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -26.46 11.39 55.43 0.63 -25.82 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 2.86 5.39 -3.73 -0.02 2.84 16 25 N -0.25 -4.70 11.77 33.67 0.40 -4.31 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 1.24 7.92 -51.93 -0.41 0.83 16 34 H 0.10 1.39 7.69 -51.93 -0.40 0.99 16 35 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.12 3.58 5.11 -51.93 -0.27 3.31 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -36.02 349.02 -8.16 -44.18 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.84 Total: 1.87 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.93 Total: -5.65 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.29 Total: -48.83 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.02 -8.16 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.555 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds