Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47333 * 2 1 4 4 C 1.34953 * 126.03298 * 125.00292 * 3 2 1 5 5 C 1.35326 * 107.74410 * 180.02562 * 4 3 2 6 6 C 1.39864 * 107.91649 * 0.02562 * 5 4 3 7 7 C 1.50709 * 125.89611 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47044 * 124.99638 * 7 6 5 9 9 O 1.21284 * 120.00087 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00162 * 180.02562 * 8 7 6 11 11 C 1.46933 * 120.62602 * 359.97327 * 10 8 7 12 12 C 1.53188 * 108.77495 * 233.63137 * 11 10 8 13 13 C 1.53034 * 109.31404 * 305.36890 * 12 11 10 14 14 C 1.53346 * 109.61010 * 61.37429 * 13 12 11 15 15 H 1.09002 * 109.47277 * 58.54691 * 14 13 12 16 16 C 1.50698 * 109.68835 * 178.74685 * 14 13 12 17 17 H 1.08009 * 119.99739 * 359.75029 * 16 14 13 18 18 C 1.37876 * 120.00334 * 179.75168 * 16 14 13 19 19 N 1.31517 * 119.99819 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47523 * 89.99881 * 20 18 16 22 22 H 1.48500 * 109.46942 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47413 * 329.99809 * 20 18 16 24 24 C 1.46919 * 120.63395 * 180.02562 * 10 8 7 25 25 N 1.30835 * 108.20676 * 0.25946 * 6 5 4 26 26 H 1.08993 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46418 * 299.99488 * 1 2 3 28 28 H 1.08994 * 109.46858 * 59.99222 * 1 2 3 29 29 H 1.09006 * 109.47229 * 240.00136 * 2 1 3 30 30 H 1.09003 * 109.47353 * 120.00412 * 2 1 3 31 31 H 1.08000 * 126.13137 * 0.03854 * 4 3 2 32 32 H 1.07991 * 126.03697 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46530 * 4.99988 * 7 6 5 34 34 H 1.08993 * 109.46840 * 244.99793 * 7 6 5 35 35 H 1.08994 * 109.58580 * 353.42544 * 11 10 8 36 36 H 1.09002 * 109.58042 * 113.84624 * 11 10 8 37 37 H 1.08994 * 109.49494 * 65.32533 * 12 11 10 38 38 H 1.09000 * 109.49460 * 185.41816 * 12 11 10 39 39 H 1.08999 * 109.45836 * 181.38851 * 13 12 11 40 40 H 1.09000 * 109.46169 * 301.34220 * 13 12 11 41 41 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58751 * 246.15665 * 24 10 8 43 43 H 1.08996 * 109.58750 * 6.43850 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8732 1.9209 0.8939 5 6 3.0715 3.2137 0.5464 6 6 2.3113 3.4728 -0.5987 7 6 2.2340 4.7890 -1.3288 8 6 2.5901 4.5810 -2.7782 9 8 2.8788 3.4733 -3.1789 10 7 2.5888 5.6263 -3.6292 11 6 2.2418 6.9742 -3.1585 12 6 1.1214 7.5317 -4.0420 13 6 1.5551 7.4702 -5.5084 14 6 1.8063 6.0117 -5.9100 15 1 0.8975 5.4303 -5.7544 16 6 2.2037 5.9462 -7.3621 17 1 2.2677 6.8527 -7.9459 18 6 2.4856 4.7292 -7.9456 19 7 2.4071 3.6254 -7.2349 20 14 2.9789 4.6482 -9.7454 21 1 4.4548 4.7645 -9.8599 22 1 2.5382 3.3524 -10.3215 23 1 2.3356 5.7633 -10.4857 24 6 2.9332 5.4393 -5.0451 25 7 1.6751 2.3768 -0.9237 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3194 1.4123 1.7357 32 1 3.7047 3.9203 1.0621 33 1 2.9333 5.4947 -0.8804 34 1 1.2213 5.1854 -1.2567 35 1 1.9009 6.9237 -2.1245 36 1 3.1165 7.6211 -3.2259 37 1 0.2190 6.9363 -3.9042 38 1 0.9207 8.5667 -3.7652 39 1 0.7695 7.8891 -6.1372 40 1 2.4713 8.0457 -5.6406 41 1 2.6050 2.7692 -7.6454 42 1 3.8644 5.9607 -5.2667 43 1 3.0508 4.3762 -5.2553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597900517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = 9.855252 kcal Electronic energy + Delta-G solvation = -23525.450878 eV Core-core repulsion = 20185.015024 eV Total energy + Delta-G solvation = -3340.435854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10164 -40.77732 -38.26796 -35.58085 -35.27661 -33.48471 -32.50990 -31.45619 -30.63291 -29.11610 -26.97585 -25.94812 -24.10058 -23.38123 -21.95708 -21.74752 -20.58068 -19.48663 -18.50207 -17.96911 -17.70693 -16.69820 -16.47527 -16.29780 -16.09759 -15.19961 -15.16150 -14.88834 -14.69237 -14.58808 -14.34432 -14.04871 -13.90070 -13.54877 -13.38958 -13.22983 -12.95449 -12.89619 -12.82142 -12.62081 -12.27586 -12.23265 -12.22036 -11.76296 -11.60854 -11.33193 -11.07136 -10.92850 -10.60468 -10.49478 -10.11583 -9.39778 -9.31589 -8.11334 -6.29566 1.08757 1.38365 1.39082 1.50307 1.72407 1.84623 1.85748 2.38017 2.46798 3.16599 3.53028 3.84024 3.89227 4.06013 4.11311 4.17199 4.22807 4.33338 4.34787 4.39225 4.51988 4.65010 4.68013 4.77533 4.82133 4.85854 4.91419 4.92725 4.96907 5.13401 5.16014 5.25079 5.28742 5.32984 5.39617 5.55298 5.70430 5.77756 5.91729 6.02194 6.30969 6.33650 6.77255 6.84706 6.92288 7.40271 7.47917 8.91590 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.004150 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.221340 B = 6745.639098 C = 7810.633708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.383 5.383 4 C 0.053 3.947 5 C -0.281 4.281 6 C 0.061 3.939 7 C -0.047 4.047 8 C 0.497 3.503 9 O -0.587 6.587 10 N -0.613 5.613 11 C 0.102 3.898 12 C -0.128 4.128 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.019 1.019 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.917 5.917 20 Si 0.959 3.041 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.260 1.260 24 C 0.127 3.873 25 N -0.322 5.322 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.218 0.782 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.257 0.743 42 H 0.033 0.967 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 1.490 21.314 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 N -0.166 5.166 4 C -0.092 4.092 5 C -0.310 4.310 6 C -0.105 4.105 7 C -0.088 4.088 8 C 0.285 3.715 9 O -0.466 6.466 10 N -0.346 5.346 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.143 4.143 14 C 0.019 3.981 15 H -0.001 1.001 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.784 3.216 21 H -0.199 1.199 22 H -0.215 1.215 23 H -0.184 1.184 24 C 0.004 3.996 25 N -0.145 5.145 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.234 0.766 32 H 0.192 0.808 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.172 0.015 20.281 20.314 hybrid contribution 0.732 -0.314 -1.136 1.388 sum -0.440 -0.299 19.144 19.152 Atomic orbital electron populations 1.21980 0.93827 1.03831 1.01872 1.21980 0.96275 0.76551 1.05032 1.49079 1.36051 1.10620 1.20894 1.23256 0.94748 0.94685 0.96533 1.21717 1.09962 0.98135 1.01166 1.22024 0.97773 0.94400 0.96348 1.20168 1.06230 0.93675 0.88715 1.21260 0.77158 0.83829 0.89258 1.90709 1.50330 1.26117 1.79487 1.48526 1.67290 1.09158 1.09618 1.22074 0.98677 0.81711 0.99525 1.21924 0.97716 1.02302 0.94638 1.21563 1.00354 0.96297 0.96109 1.18949 0.92728 0.92899 0.93536 1.00127 1.21553 1.46662 0.93009 0.96229 0.91864 1.25949 0.95365 0.95462 1.02436 1.70135 1.49459 0.98369 1.37661 0.85536 0.78640 0.77481 0.79913 1.19919 1.21456 1.18420 1.21581 0.97008 1.02716 0.78252 1.77395 1.25555 0.97973 1.13603 0.88202 0.91826 0.94698 0.91263 0.84304 0.76568 0.80843 0.83256 0.85931 0.86498 0.89844 0.93378 0.87487 0.93226 0.92313 0.93353 0.94819 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.09 71.98 0.73 -2.35 16 2 C 0.12 2.43 7.23 86.38 0.62 3.05 16 3 N -0.38 -10.81 3.68 -348.05 -1.28 -12.09 16 4 C 0.05 1.16 11.45 83.54 0.96 2.11 16 5 C -0.28 -6.92 10.72 21.99 0.24 -6.69 16 6 C 0.06 2.01 6.01 43.10 0.26 2.27 16 7 C -0.05 -1.37 4.62 29.10 0.13 -1.23 16 8 C 0.50 21.32 7.69 87.66 0.67 21.99 16 9 O -0.59 -32.72 14.98 -3.04 -0.05 -32.77 16 10 N -0.61 -25.37 2.97 -818.99 -2.44 -27.81 16 11 C 0.10 2.82 6.34 86.36 0.55 3.37 16 12 C -0.13 -3.79 6.08 30.67 0.19 -3.60 16 13 C -0.11 -4.18 5.13 30.72 0.16 -4.02 16 14 C 0.04 2.01 2.26 -11.37 -0.03 1.99 16 15 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 16 C -0.54 -30.71 8.57 25.60 0.22 -30.49 16 17 H 0.06 3.46 7.75 -2.91 -0.02 3.43 16 18 C 0.01 0.40 5.30 84.65 0.45 0.85 16 19 N -0.92 -58.79 11.39 21.45 0.24 -58.55 16 20 Si 0.96 45.90 29.54 68.60 2.03 47.92 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.13 6.68 5.39 86.35 0.47 7.14 16 25 N -0.32 -12.36 11.77 -47.38 -0.56 -12.91 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.14 1.40 8.07 -2.39 -0.02 1.39 16 31 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.17 3.01 8.06 -2.92 -0.02 2.98 16 33 H 0.15 2.91 7.92 -2.39 -0.02 2.89 16 34 H 0.12 3.03 7.69 -2.39 -0.02 3.01 16 35 H 0.12 2.21 5.93 -2.39 -0.01 2.20 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 4.45 5.11 -2.39 -0.01 4.43 16 Total: -1.00 -89.39 349.02 4.54 -84.84 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.98 Total: 16.96 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.61 Total: -5.60 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.03 Total: -111.36 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.77 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -89.39 4.54 -84.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.700 kcal (2) G-P(sol) polarization free energy of solvation -89.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds