Wall clock time and date at job start Tue Mar 31 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 C 1.50698 * 109.47034 * 90.00197 * 6 5 4 8 8 O 1.21277 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63059 * 359.97438 * 9 7 6 11 11 C 1.53193 * 108.77242 * 126.37291 * 10 9 7 12 12 C 1.53035 * 109.31502 * 54.63694 * 11 10 9 13 13 C 1.53043 * 109.53913 * 298.63290 * 12 11 10 14 14 H 1.08997 * 109.49502 * 301.38571 * 13 12 11 15 15 C 1.50698 * 109.49945 * 181.31179 * 13 12 11 16 16 H 1.07994 * 120.00187 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99800 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00038 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99870 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47229 * 60.00083 * 19 17 15 21 21 H 1.48501 * 109.47395 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47199 * 300.00537 * 19 17 15 23 23 C 1.46923 * 120.62946 * 179.71967 * 9 7 6 24 24 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 25 25 N 1.30837 * 108.19940 * 0.36269 * 24 5 4 26 26 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 27 27 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 29 29 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 30 30 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 31 31 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47285 * 209.99879 * 6 5 4 33 33 H 1.08996 * 109.47189 * 329.99836 * 6 5 4 34 34 H 1.08998 * 109.59157 * 246.15888 * 10 9 7 35 35 H 1.08999 * 109.58633 * 6.44363 * 10 9 7 36 36 H 1.09006 * 109.49403 * 174.58847 * 11 10 9 37 37 H 1.09002 * 109.49506 * 294.68166 * 11 10 9 38 38 H 1.09000 * 109.46179 * 58.64907 * 12 11 10 39 39 H 1.08997 * 109.46279 * 178.62868 * 12 11 10 40 40 H 0.97004 * 119.99767 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.58872 * 353.41441 * 23 9 7 42 42 H 1.09003 * 109.58874 * 113.84235 * 23 9 7 43 43 H 1.08001 * 125.90034 * 180.14354 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 3.9452 4.2033 1.2731 7 6 5.3383 4.1508 0.7008 8 8 5.5933 3.3860 -0.2052 9 7 6.3012 4.9531 1.1966 10 6 6.0077 5.8845 2.2945 11 6 7.0123 5.6450 3.4259 12 6 8.4346 5.7549 2.8718 13 6 8.6503 4.6842 1.7997 14 1 8.4833 3.6977 2.2320 15 6 10.0612 4.7724 1.2775 16 1 10.7370 5.5172 1.6708 17 6 10.4894 3.9014 0.2981 18 7 9.6666 2.9941 -0.1806 19 14 12.2385 4.0103 -0.3487 20 1 13.1935 3.7927 0.7675 21 1 12.4471 2.9713 -1.3890 22 1 12.4651 5.3539 -0.9393 23 6 7.6655 4.9091 0.6532 24 6 2.3116 3.4728 -0.5992 25 7 1.6801 2.3750 -0.9275 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.3185 1.4127 1.7363 32 1 3.5397 5.2076 1.1504 33 1 3.9781 3.9517 2.3331 34 1 6.0974 6.9103 1.9373 35 1 4.9952 5.7118 2.6593 36 1 6.8669 6.3926 4.2058 37 1 6.8602 4.6494 3.8428 38 1 8.5780 6.7422 2.4328 39 1 9.1514 5.6090 3.6797 40 1 9.9678 2.3816 -0.8699 41 1 7.7475 4.0914 -0.0628 42 1 7.8930 5.8539 0.1596 43 1 2.2560 4.4160 -1.1223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:20 Heat of formation + Delta-G solvation = 32.301596 kcal Electronic energy + Delta-G solvation = -23402.354306 eV Core-core repulsion = 20062.891799 eV Total energy + Delta-G solvation = -3339.462507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09393 -39.18464 -36.60408 -34.58805 -33.36857 -31.89006 -31.46569 -30.12927 -29.69448 -26.97993 -24.98432 -24.22320 -23.62380 -21.76686 -20.69814 -20.41978 -19.42380 -18.06555 -16.85218 -16.67467 -15.99525 -15.41761 -14.89650 -14.76129 -14.47537 -14.26349 -13.97557 -13.62851 -13.32388 -13.07462 -12.84162 -12.58736 -12.48713 -12.39086 -12.23471 -12.05548 -11.83843 -11.51413 -11.39830 -10.95582 -10.87406 -10.49719 -10.43169 -10.29546 -10.19516 -9.84278 -9.24874 -9.18669 -9.05724 -8.85458 -8.39470 -8.13593 -7.63111 -5.96373 -4.05396 2.05658 2.59631 2.95106 3.33373 3.39549 3.40655 3.43067 3.96892 4.42049 4.45415 4.77712 4.90669 5.02556 5.10028 5.23596 5.28118 5.33391 5.34546 5.45048 5.53583 5.54937 5.58402 5.73112 5.79904 5.83305 6.00207 6.06197 6.21644 6.29095 6.35406 6.63982 6.72818 6.80343 6.91466 7.01899 7.14362 7.23290 7.39998 7.69378 7.85190 7.93058 8.05438 8.38169 8.44227 8.97245 9.07893 9.60050 11.08570 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.003793 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.115273 B = 7379.327023 C = 8300.690020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 N -0.375 5.375 4 C 0.067 3.933 5 C -0.212 4.212 6 C -0.061 4.061 7 C 0.503 3.497 8 O -0.531 6.531 9 N -0.611 5.611 10 C 0.109 3.891 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.027 0.973 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.113 3.887 24 C 0.062 3.938 25 N -0.301 5.301 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.039 0.961 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.775 -0.311 5.763 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.158 5.158 4 C -0.079 4.079 5 C -0.223 4.223 6 C -0.102 4.102 7 C 0.290 3.710 8 O -0.407 6.407 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.045 0.955 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.007 4.007 24 C -0.124 4.124 25 N -0.122 5.122 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.187 0.813 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.057 0.943 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.506 -1.602 4.293 18.096 hybrid contribution 1.706 0.453 0.301 1.791 sum -15.800 -1.148 4.594 16.494 Atomic orbital electron populations 1.22043 0.94036 1.02569 1.03450 1.21624 0.95732 0.77876 1.03745 1.48506 1.36012 1.09930 1.21346 1.22228 0.95011 0.94259 0.96423 1.19473 1.06688 0.94958 1.01216 1.19968 0.91877 0.98776 0.99597 1.20532 0.86282 0.80660 0.83564 1.90709 1.82061 1.38233 1.29682 1.48524 1.12075 1.38571 1.35276 1.21618 0.98331 0.93379 0.88141 1.21944 0.97244 1.01189 0.96829 1.21624 0.93422 1.00493 0.99326 1.18884 0.94101 0.93852 0.91030 0.95490 1.21047 0.96300 1.17161 1.21559 0.92481 1.25052 0.97365 0.95125 0.96478 1.69884 1.34850 1.18848 1.28135 0.86667 0.85035 0.77739 0.78600 1.20316 1.21288 1.20256 1.22135 0.76627 1.02404 0.99536 1.23660 0.95746 0.97392 0.95630 1.77221 1.24739 0.96788 1.13442 0.91162 0.90940 0.92205 0.89936 0.88809 0.81344 0.88890 0.89091 0.92213 0.91060 0.92335 0.92226 0.93231 0.93147 0.92656 0.86070 0.94300 0.80470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.10 37.16 0.38 -0.92 16 2 C 0.13 1.25 7.23 -4.04 -0.03 1.22 16 3 N -0.38 -5.13 3.68 -61.37 -0.23 -5.36 16 4 C 0.07 0.93 11.36 -17.22 -0.20 0.73 16 5 C -0.21 -3.16 4.59 -105.06 -0.48 -3.65 16 6 C -0.06 -0.85 4.53 -29.03 -0.13 -0.98 16 7 C 0.50 9.92 7.69 -10.98 -0.08 9.84 16 8 O -0.53 -13.17 15.45 5.56 0.09 -13.08 16 9 N -0.61 -12.06 2.98 -173.01 -0.52 -12.58 16 10 C 0.11 1.63 6.35 -3.71 -0.02 1.61 16 11 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 12 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 13 C 0.04 1.00 2.24 -91.85 -0.21 0.79 16 14 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 15 C -0.52 -14.23 8.56 -34.44 -0.29 -14.53 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.97 11.39 55.43 0.63 -25.34 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.11 2.76 5.38 -3.91 -0.02 2.74 16 24 C 0.06 0.93 11.96 -17.37 -0.21 0.72 16 25 N -0.30 -4.70 12.42 30.62 0.38 -4.32 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 33 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 3.49 5.12 -51.93 -0.27 3.23 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -34.51 349.74 -7.93 -42.44 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.84 Total: 1.88 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.69 Total: -5.34 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.27 Total: -47.59 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.51 -7.93 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.743 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds