Wall clock time and date at job start Tue Mar 31 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 C 1.50698 * 109.47034 * 90.00197 * 6 5 4 8 8 O 1.21277 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63059 * 359.97438 * 9 7 6 11 11 C 1.53193 * 108.77242 * 126.37291 * 10 9 7 12 12 C 1.53035 * 109.31502 * 54.63694 * 11 10 9 13 13 C 1.53043 * 109.53913 * 298.63290 * 12 11 10 14 14 H 1.08997 * 109.49502 * 301.38571 * 13 12 11 15 15 C 1.50698 * 109.49945 * 181.31179 * 13 12 11 16 16 H 1.07994 * 120.00187 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99800 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00038 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99870 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47229 * 60.00083 * 19 17 15 21 21 H 1.48501 * 109.47395 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47199 * 300.00537 * 19 17 15 23 23 C 1.46923 * 120.62946 * 179.71967 * 9 7 6 24 24 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 25 25 N 1.30837 * 108.19940 * 0.36269 * 24 5 4 26 26 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 27 27 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 29 29 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 30 30 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 31 31 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47285 * 209.99879 * 6 5 4 33 33 H 1.08996 * 109.47189 * 329.99836 * 6 5 4 34 34 H 1.08998 * 109.59157 * 246.15888 * 10 9 7 35 35 H 1.08999 * 109.58633 * 6.44363 * 10 9 7 36 36 H 1.09006 * 109.49403 * 174.58847 * 11 10 9 37 37 H 1.09002 * 109.49506 * 294.68166 * 11 10 9 38 38 H 1.09000 * 109.46179 * 58.64907 * 12 11 10 39 39 H 1.08997 * 109.46279 * 178.62868 * 12 11 10 40 40 H 0.97004 * 119.99767 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.58872 * 353.41441 * 23 9 7 42 42 H 1.09003 * 109.58874 * 113.84235 * 23 9 7 43 43 H 1.08001 * 125.90034 * 180.14354 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 3.9452 4.2033 1.2731 7 6 5.3383 4.1508 0.7008 8 8 5.5933 3.3860 -0.2052 9 7 6.3012 4.9531 1.1966 10 6 6.0077 5.8845 2.2945 11 6 7.0123 5.6450 3.4259 12 6 8.4346 5.7549 2.8718 13 6 8.6503 4.6842 1.7997 14 1 8.4833 3.6977 2.2320 15 6 10.0612 4.7724 1.2775 16 1 10.7370 5.5172 1.6708 17 6 10.4894 3.9014 0.2981 18 7 9.6666 2.9941 -0.1806 19 14 12.2385 4.0103 -0.3487 20 1 13.1935 3.7927 0.7675 21 1 12.4471 2.9713 -1.3890 22 1 12.4651 5.3539 -0.9393 23 6 7.6655 4.9091 0.6532 24 6 2.3116 3.4728 -0.5992 25 7 1.6801 2.3750 -0.9275 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.3185 1.4127 1.7363 32 1 3.5397 5.2076 1.1504 33 1 3.9781 3.9517 2.3331 34 1 6.0974 6.9103 1.9373 35 1 4.9952 5.7118 2.6593 36 1 6.8669 6.3926 4.2058 37 1 6.8602 4.6494 3.8428 38 1 8.5780 6.7422 2.4328 39 1 9.1514 5.6090 3.6797 40 1 9.9678 2.3816 -0.8699 41 1 7.7475 4.0914 -0.0628 42 1 7.8930 5.8539 0.1596 43 1 2.2560 4.4160 -1.1223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:20 Heat of formation + Delta-G solvation = 10.052761 kcal Electronic energy + Delta-G solvation = -23403.319088 eV Core-core repulsion = 20062.891799 eV Total energy + Delta-G solvation = -3340.427289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15371 -40.71621 -38.22815 -35.48898 -35.25061 -33.48371 -32.73761 -31.44929 -31.00667 -28.22945 -26.84438 -25.65442 -24.58460 -23.35825 -21.89199 -21.55202 -20.85558 -19.53807 -18.49505 -17.87430 -17.69618 -16.64931 -16.40162 -16.21084 -16.08149 -15.31200 -15.10786 -14.88603 -14.73262 -14.57533 -14.23585 -14.04961 -13.78987 -13.63624 -13.39768 -13.18871 -12.96378 -12.85051 -12.66511 -12.59069 -12.27280 -12.22709 -12.19122 -11.73953 -11.57691 -11.42145 -11.04562 -10.89732 -10.56560 -10.45304 -10.30021 -9.27635 -9.24353 -8.09911 -6.27073 1.00475 1.39768 1.41493 1.49661 1.68618 1.80997 1.94892 2.40319 2.54726 3.18409 3.59903 3.96435 3.99355 4.08696 4.13367 4.20282 4.26714 4.33632 4.36270 4.44665 4.50255 4.67957 4.74502 4.74983 4.83062 4.87229 4.91739 4.98601 4.99620 5.16620 5.23001 5.24164 5.31821 5.36448 5.43549 5.57555 5.74071 5.76691 5.95156 6.05637 6.19877 6.36754 6.78337 6.86102 6.86860 7.42534 7.56201 8.92599 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.003793 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.115273 B = 7379.327023 C = 8300.690020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.119 3.881 3 N -0.377 5.377 4 C 0.061 3.939 5 C -0.234 4.234 6 C -0.043 4.043 7 C 0.495 3.505 8 O -0.595 6.595 9 N -0.615 5.615 10 C 0.103 3.897 11 C -0.127 4.127 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.014 1.014 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.915 5.915 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.126 3.874 24 C 0.047 3.953 25 N -0.331 5.331 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.193 0.807 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 0.911 8.013 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.001 4.001 3 N -0.160 5.160 4 C -0.086 4.086 5 C -0.246 4.246 6 C -0.084 4.084 7 C 0.284 3.716 8 O -0.475 6.475 9 N -0.347 5.347 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.004 0.996 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.554 5.554 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.193 1.193 23 C 0.004 3.996 24 C -0.138 4.138 25 N -0.153 5.153 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.210 0.790 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.703 -0.345 6.587 19.832 hybrid contribution 2.073 0.026 -0.393 2.110 sum -16.630 -0.318 6.194 17.749 Atomic orbital electron populations 1.21973 0.92811 1.03992 1.02357 1.22023 0.96833 0.76216 1.05042 1.48886 1.35646 1.10795 1.20648 1.22736 0.94523 0.94368 0.96937 1.19722 1.07316 0.95832 1.01728 1.19966 0.87227 1.00621 1.00550 1.21666 0.88225 0.79119 0.82570 1.90682 1.83388 1.40803 1.32643 1.48571 1.10149 1.39583 1.36390 1.22032 1.00653 0.92976 0.86225 1.21915 0.94167 1.02439 0.97940 1.21527 0.96779 0.98517 0.97659 1.18813 0.93142 0.93535 0.92474 0.99622 1.21533 0.97924 1.16819 1.21315 0.92113 1.25897 1.01353 0.94878 0.96919 1.70097 1.36722 1.19824 1.28712 0.85644 0.80324 0.77856 0.78056 1.19189 1.21577 1.19269 1.21495 0.79863 0.99701 0.98581 1.24030 0.95816 0.97966 0.95979 1.77152 1.25842 0.97600 1.14681 0.93152 0.88228 0.92281 0.90224 0.85947 0.78966 0.85440 0.85849 0.90563 0.86279 0.87834 0.92804 0.92741 0.93244 0.93323 0.91020 0.95342 0.79085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.10 71.98 0.73 -1.51 16 2 C 0.12 2.11 7.23 86.38 0.62 2.73 16 3 N -0.38 -10.04 3.68 -348.06 -1.28 -11.32 16 4 C 0.06 1.62 11.36 83.54 0.95 2.57 16 5 C -0.23 -6.67 4.59 -20.15 -0.09 -6.76 16 6 C -0.04 -1.07 4.53 29.10 0.13 -0.94 16 7 C 0.49 19.27 7.69 87.66 0.67 19.94 16 8 O -0.59 -30.67 15.45 -3.02 -0.05 -30.72 16 9 N -0.61 -23.79 2.98 -819.67 -2.44 -26.23 16 10 C 0.10 2.66 6.35 86.36 0.55 3.21 16 11 C -0.13 -3.49 6.08 30.67 0.19 -3.30 16 12 C -0.11 -4.08 5.11 30.62 0.16 -3.92 16 13 C 0.04 2.01 2.24 -11.59 -0.03 1.98 16 14 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 15 C -0.54 -30.00 8.56 25.60 0.22 -29.78 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.50 5.30 84.66 0.45 0.95 16 18 N -0.91 -56.75 11.39 21.45 0.24 -56.51 16 19 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.13 6.38 5.38 86.23 0.46 6.84 16 24 C 0.05 1.41 11.96 85.23 1.02 2.43 16 25 N -0.33 -10.34 12.42 -57.03 -0.71 -11.05 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.12 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.13 2.32 7.94 -2.39 -0.02 2.30 16 33 H 0.12 2.30 7.69 -2.39 -0.02 2.28 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.12 2.01 5.93 -2.39 -0.01 1.99 16 36 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.07 4.39 5.12 -2.39 -0.01 4.37 16 42 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.19 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -82.12 349.74 4.81 -77.31 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.98 Total: 17.10 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.03 Total: -5.57 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.19 Total: -105.11 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -82.12 4.81 -77.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.359 kcal (2) G-P(sol) polarization free energy of solvation -82.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds