Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46991 * 2 1 4 4 C 1.34952 * 126.03746 * 125.26314 * 3 2 1 5 5 C 1.35312 * 107.74457 * 180.14407 * 4 3 2 6 6 C 1.50700 * 126.03735 * 179.87631 * 5 4 3 7 7 C 1.50697 * 109.47022 * 269.71097 * 6 5 4 8 8 O 1.21288 * 119.99933 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00489 * 180.02562 * 7 6 5 10 10 C 1.46957 * 120.64915 * 359.81927 * 9 7 6 11 11 C 1.53197 * 108.89063 * 233.53185 * 10 9 7 12 12 C 1.53040 * 109.31110 * 305.44560 * 11 10 9 13 13 C 1.53044 * 109.53662 * 61.36306 * 12 11 10 14 14 H 1.08997 * 109.49691 * 58.58900 * 13 12 11 15 15 C 1.50702 * 109.52456 * 178.66800 * 13 12 11 16 16 H 1.07999 * 119.99626 * 359.84978 * 15 13 12 17 17 C 1.37867 * 120.00164 * 179.85610 * 15 13 12 18 18 N 1.31511 * 120.00366 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99948 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47177 * 60.00020 * 19 17 15 21 21 H 1.48503 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47160 * 299.99736 * 19 17 15 23 23 C 1.46926 * 120.63278 * 180.02562 * 9 7 6 24 24 C 1.39872 * 107.92240 * 359.60910 * 5 4 3 25 25 N 1.30835 * 108.20200 * 0.23999 * 24 5 4 26 26 H 1.08999 * 109.46795 * 59.99466 * 1 2 3 27 27 H 1.08990 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46716 * 300.00640 * 1 2 3 29 29 H 1.08993 * 109.47173 * 239.99920 * 2 1 3 30 30 H 1.08999 * 109.47053 * 119.99608 * 2 1 3 31 31 H 1.08004 * 126.12486 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47286 * 149.71303 * 6 5 4 33 33 H 1.08997 * 109.47448 * 29.70811 * 6 5 4 34 34 H 1.09001 * 109.46843 * 113.75181 * 10 9 7 35 35 H 1.08998 * 109.59977 * 353.39397 * 10 9 7 36 36 H 1.08995 * 109.50005 * 185.49506 * 11 10 9 37 37 H 1.08996 * 109.49270 * 65.39471 * 11 10 9 38 38 H 1.08994 * 109.45892 * 301.34445 * 12 11 10 39 39 H 1.09001 * 109.45142 * 181.37673 * 12 11 10 40 40 H 0.97005 * 120.00627 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58861 * 6.60537 * 23 9 7 42 42 H 1.08996 * 109.58519 * 246.32428 * 23 9 7 43 43 H 1.07998 * 125.89909 * 180.26822 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9198 0.8910 5 6 3.0715 3.2136 0.5461 6 6 3.9550 4.1998 1.2658 7 6 3.1522 4.9168 2.3206 8 8 1.9783 4.6526 2.4732 9 7 3.7386 5.8517 3.0944 10 6 5.1608 6.1803 2.9245 11 6 5.8650 6.0507 4.2788 12 6 5.1390 6.9157 5.3116 13 6 3.6977 6.4252 5.4677 14 1 3.7006 5.3801 5.7774 15 6 2.9927 7.2563 6.5084 16 1 3.5202 8.0535 7.0110 17 6 1.6744 6.9989 6.8192 18 7 1.0318 6.0284 6.2070 19 14 0.8007 8.0288 8.1098 20 1 0.7986 9.4527 7.6886 21 1 -0.5988 7.5546 8.2572 22 1 1.5076 7.8979 9.4092 23 6 2.9691 6.5587 4.1272 24 6 2.3126 3.4724 -0.6000 25 7 1.6809 2.3747 -0.9283 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.3260 1.4101 1.7307 32 1 4.3469 4.9247 0.5523 33 1 4.7826 3.6698 1.7371 34 1 5.2563 7.2029 2.5595 35 1 5.6124 5.4916 2.2105 36 1 6.8980 6.3857 4.1853 37 1 5.8474 5.0091 4.5997 38 1 5.1353 7.9533 4.9780 39 1 5.6526 6.8443 6.2704 40 1 0.1041 5.8475 6.4253 41 1 1.9746 6.1197 4.2067 42 1 2.8832 7.6123 3.8617 43 1 2.2579 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = 32.185431 kcal Electronic energy + Delta-G solvation = -23461.162756 eV Core-core repulsion = 20121.695211 eV Total energy + Delta-G solvation = -3339.467544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09096 -39.17546 -36.59315 -34.56179 -33.36277 -31.88823 -31.46637 -30.10547 -29.67942 -26.96989 -24.98534 -24.20953 -23.60586 -21.76963 -20.69306 -20.41897 -19.42062 -18.05373 -16.85876 -16.67063 -15.99188 -15.36454 -14.97966 -14.76533 -14.47633 -14.17259 -13.90546 -13.63068 -13.34639 -13.03856 -12.89353 -12.60962 -12.49576 -12.29325 -12.16151 -12.04287 -11.84133 -11.46982 -11.40142 -10.95674 -10.87340 -10.49789 -10.42906 -10.29344 -10.19713 -9.84131 -9.24882 -9.18558 -9.06010 -8.85463 -8.39691 -8.13521 -7.62966 -5.96436 -4.05560 2.05017 2.60677 2.95182 3.33324 3.39467 3.40578 3.43073 3.96870 4.43597 4.45376 4.83184 4.93177 5.03054 5.10656 5.23379 5.28237 5.33551 5.38526 5.45369 5.54711 5.58427 5.62674 5.73150 5.80171 5.92499 6.04414 6.06167 6.21684 6.29145 6.35240 6.63698 6.72698 6.80413 6.91375 7.01675 7.14626 7.23121 7.39882 7.69101 7.85237 7.92818 8.05147 8.38129 8.44139 8.97102 9.07878 9.59993 11.08510 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.004042 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.565562 B = 6925.932906 C = 8050.004649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.375 5.375 4 C 0.066 3.934 5 C -0.211 4.211 6 C -0.061 4.061 7 C 0.503 3.497 8 O -0.531 6.531 9 N -0.611 5.611 10 C 0.109 3.891 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.041 3.959 14 H 0.027 0.973 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.113 3.887 24 C 0.062 3.938 25 N -0.301 5.301 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.169 0.831 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.039 0.961 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 -8.873 -12.285 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.158 5.158 4 C -0.080 4.080 5 C -0.223 4.223 6 C -0.102 4.102 7 C 0.290 3.710 8 O -0.407 6.407 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.022 3.978 14 H 0.045 0.955 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.007 4.007 24 C -0.125 4.125 25 N -0.122 5.122 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.187 0.813 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.057 0.943 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.933 -9.823 -13.034 17.366 hybrid contribution 0.138 1.006 1.456 1.775 sum 6.071 -8.817 -11.578 15.769 Atomic orbital electron populations 1.22056 0.93890 1.02549 1.03900 1.21610 0.96124 0.77721 1.03296 1.48521 1.35575 1.10058 1.21670 1.22229 0.95295 0.94914 0.95534 1.19470 1.08072 0.94170 1.00584 1.19966 0.96991 0.96742 0.96520 1.20531 0.88113 0.80020 0.82370 1.90712 1.16461 1.64172 1.69344 1.48528 1.10143 1.39356 1.36415 1.21625 0.82123 1.00246 0.97470 1.21944 0.98164 1.01131 0.95974 1.21624 0.98499 0.98023 0.96711 1.18942 0.89356 0.97171 0.92353 0.95474 1.21052 0.96496 1.17309 1.21247 0.92483 1.25043 0.97620 0.95097 0.96198 1.69882 1.11032 1.29499 1.41335 0.86672 0.78697 0.80635 0.82081 1.20243 1.21290 1.20300 1.22202 0.98957 0.93970 0.85596 1.23663 0.95274 0.97156 0.96370 1.77221 1.23507 0.97153 1.14284 0.91184 0.90959 0.91755 0.90178 0.88852 0.81346 0.88893 0.89092 0.92212 0.91058 0.92321 0.92226 0.93231 0.93156 0.92653 0.86082 0.94309 0.80474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.10 37.16 0.38 -1.23 16 2 C 0.13 1.27 7.23 -4.04 -0.03 1.24 16 3 N -0.38 -5.14 3.68 -61.37 -0.23 -5.36 16 4 C 0.07 0.92 11.36 -17.22 -0.20 0.72 16 5 C -0.21 -3.16 4.59 -105.05 -0.48 -3.64 16 6 C -0.06 -0.85 4.53 -29.04 -0.13 -0.98 16 7 C 0.50 9.91 7.69 -10.99 -0.08 9.83 16 8 O -0.53 -13.16 15.45 5.55 0.09 -13.07 16 9 N -0.61 -12.06 2.98 -172.77 -0.51 -12.57 16 10 C 0.11 1.63 6.34 -3.69 -0.02 1.61 16 11 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 12 C -0.11 -2.19 5.11 -26.69 -0.14 -2.32 16 13 C 0.04 1.01 2.25 -91.67 -0.21 0.80 16 14 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.52 -14.25 8.56 -34.44 -0.30 -14.54 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -25.98 11.39 55.43 0.63 -25.35 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.11 2.76 5.39 -3.73 -0.02 2.74 16 24 C 0.06 0.93 11.96 -17.36 -0.21 0.72 16 25 N -0.30 -4.70 12.42 30.62 0.38 -4.32 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 33 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.82 5.94 -51.93 -0.31 0.51 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 3.49 5.12 -51.93 -0.27 3.22 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -34.49 349.77 -7.93 -42.41 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.84 Total: 2.20 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.69 Total: -5.63 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.27 Total: -47.60 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.49 -7.93 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.600 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds