Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46991 * 2 1 4 4 C 1.34952 * 126.03746 * 125.26314 * 3 2 1 5 5 C 1.35312 * 107.74457 * 180.14407 * 4 3 2 6 6 C 1.50700 * 126.03735 * 179.87631 * 5 4 3 7 7 C 1.50697 * 109.47022 * 269.71097 * 6 5 4 8 8 O 1.21288 * 119.99933 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00489 * 180.02562 * 7 6 5 10 10 C 1.46957 * 120.64915 * 359.81927 * 9 7 6 11 11 C 1.53197 * 108.89063 * 233.53185 * 10 9 7 12 12 C 1.53040 * 109.31110 * 305.44560 * 11 10 9 13 13 C 1.53044 * 109.53662 * 61.36306 * 12 11 10 14 14 H 1.08997 * 109.49691 * 58.58900 * 13 12 11 15 15 C 1.50702 * 109.52456 * 178.66800 * 13 12 11 16 16 H 1.07999 * 119.99626 * 359.84978 * 15 13 12 17 17 C 1.37867 * 120.00164 * 179.85610 * 15 13 12 18 18 N 1.31511 * 120.00366 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99948 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47177 * 60.00020 * 19 17 15 21 21 H 1.48503 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47160 * 299.99736 * 19 17 15 23 23 C 1.46926 * 120.63278 * 180.02562 * 9 7 6 24 24 C 1.39872 * 107.92240 * 359.60910 * 5 4 3 25 25 N 1.30835 * 108.20200 * 0.23999 * 24 5 4 26 26 H 1.08999 * 109.46795 * 59.99466 * 1 2 3 27 27 H 1.08990 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46716 * 300.00640 * 1 2 3 29 29 H 1.08993 * 109.47173 * 239.99920 * 2 1 3 30 30 H 1.08999 * 109.47053 * 119.99608 * 2 1 3 31 31 H 1.08004 * 126.12486 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47286 * 149.71303 * 6 5 4 33 33 H 1.08997 * 109.47448 * 29.70811 * 6 5 4 34 34 H 1.09001 * 109.46843 * 113.75181 * 10 9 7 35 35 H 1.08998 * 109.59977 * 353.39397 * 10 9 7 36 36 H 1.08995 * 109.50005 * 185.49506 * 11 10 9 37 37 H 1.08996 * 109.49270 * 65.39471 * 11 10 9 38 38 H 1.08994 * 109.45892 * 301.34445 * 12 11 10 39 39 H 1.09001 * 109.45142 * 181.37673 * 12 11 10 40 40 H 0.97005 * 120.00627 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58861 * 6.60537 * 23 9 7 42 42 H 1.08996 * 109.58519 * 246.32428 * 23 9 7 43 43 H 1.07998 * 125.89909 * 180.26822 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9198 0.8910 5 6 3.0715 3.2136 0.5461 6 6 3.9550 4.1998 1.2658 7 6 3.1522 4.9168 2.3206 8 8 1.9783 4.6526 2.4732 9 7 3.7386 5.8517 3.0944 10 6 5.1608 6.1803 2.9245 11 6 5.8650 6.0507 4.2788 12 6 5.1390 6.9157 5.3116 13 6 3.6977 6.4252 5.4677 14 1 3.7006 5.3801 5.7774 15 6 2.9927 7.2563 6.5084 16 1 3.5202 8.0535 7.0110 17 6 1.6744 6.9989 6.8192 18 7 1.0318 6.0284 6.2070 19 14 0.8007 8.0288 8.1098 20 1 0.7986 9.4527 7.6886 21 1 -0.5988 7.5546 8.2572 22 1 1.5076 7.8979 9.4092 23 6 2.9691 6.5587 4.1272 24 6 2.3126 3.4724 -0.6000 25 7 1.6809 2.3747 -0.9283 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.3260 1.4101 1.7307 32 1 4.3469 4.9247 0.5523 33 1 4.7826 3.6698 1.7371 34 1 5.2563 7.2029 2.5595 35 1 5.6124 5.4916 2.2105 36 1 6.8980 6.3857 4.1853 37 1 5.8474 5.0091 4.5997 38 1 5.1353 7.9533 4.9780 39 1 5.6526 6.8443 6.2704 40 1 0.1041 5.8475 6.4253 41 1 1.9746 6.1197 4.2067 42 1 2.8832 7.6123 3.8617 43 1 2.2579 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = 9.893606 kcal Electronic energy + Delta-G solvation = -23462.129402 eV Core-core repulsion = 20121.695211 eV Total energy + Delta-G solvation = -3340.434191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14933 -40.70656 -38.21680 -35.49109 -35.24800 -33.48466 -32.73809 -31.43887 -31.01975 -28.23397 -26.84646 -25.65323 -24.60183 -23.36158 -21.88760 -21.55701 -20.85585 -19.52690 -18.48933 -17.90748 -17.65964 -16.65112 -16.38471 -16.24506 -16.10657 -15.24135 -15.13424 -14.89567 -14.74489 -14.52282 -14.17947 -14.06377 -13.96751 -13.58869 -13.41608 -13.15228 -12.99384 -12.85256 -12.66230 -12.58381 -12.29365 -12.23017 -12.21228 -11.74030 -11.57579 -11.41585 -11.04496 -10.89941 -10.56680 -10.45409 -10.29715 -9.27524 -9.23985 -8.10034 -6.27356 1.00053 1.39714 1.41471 1.49579 1.69471 1.81412 1.94933 2.40281 2.54730 3.18356 3.59519 3.96548 3.99446 4.08328 4.12819 4.19565 4.26626 4.33456 4.35218 4.44756 4.50002 4.68009 4.72827 4.73538 4.79617 4.86527 4.91352 4.98513 4.98678 5.16499 5.19750 5.24369 5.31799 5.36457 5.43517 5.57368 5.74064 5.76737 5.95020 6.05161 6.20268 6.36574 6.78478 6.86058 6.86722 7.42461 7.56282 8.92526 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.004042 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.565562 B = 6925.932906 C = 8050.004649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 N -0.377 5.377 4 C 0.061 3.939 5 C -0.234 4.234 6 C -0.043 4.043 7 C 0.494 3.506 8 O -0.595 6.595 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.127 4.127 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.014 1.014 15 C -0.538 4.538 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.915 5.915 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.126 3.874 24 C 0.047 3.953 25 N -0.331 5.331 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.194 0.806 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.432 -9.098 -13.009 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 N -0.160 5.160 4 C -0.086 4.086 5 C -0.246 4.246 6 C -0.084 4.084 7 C 0.284 3.716 8 O -0.475 6.475 9 N -0.347 5.347 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.145 4.145 13 C 0.021 3.979 14 H 0.004 0.996 15 C -0.577 4.577 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.554 5.554 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.192 1.192 23 C 0.003 3.997 24 C -0.138 4.138 25 N -0.152 5.152 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.211 0.789 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.785 -10.040 -13.773 19.175 hybrid contribution -0.748 1.032 1.694 2.120 sum 8.037 -9.008 -12.079 17.078 Atomic orbital electron populations 1.22022 0.94343 1.03907 1.01644 1.22012 0.95784 0.76222 1.05635 1.48899 1.35120 1.10979 1.21026 1.22736 0.94915 0.95145 0.95785 1.19720 1.09065 0.94900 1.00916 1.19963 0.96420 0.96900 0.95085 1.21669 0.87841 0.79355 0.82724 1.90685 1.19608 1.66012 1.71224 1.48575 1.12088 1.38930 1.35090 1.22039 0.78896 1.02624 0.98319 1.21917 0.99981 0.99906 0.94665 1.21525 0.95394 0.99022 0.98520 1.18870 0.92778 0.94431 0.91846 0.99606 1.21543 0.96907 1.17415 1.21808 0.92109 1.25882 0.98604 0.96184 0.98259 1.70095 1.10884 1.31454 1.42989 0.85652 0.77232 0.79258 0.79800 1.19239 1.21592 1.19152 1.21563 0.97562 0.93260 0.87290 1.24031 0.95208 0.97683 0.96913 1.77151 1.24390 0.98027 1.15667 0.92985 0.87803 0.94331 0.88151 0.86163 0.78949 0.85445 0.85833 0.90567 0.86274 0.87815 0.92801 0.92747 0.93248 0.93314 0.91031 0.95351 0.79101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.10 71.98 0.73 -2.32 16 2 C 0.12 2.15 7.23 86.38 0.62 2.77 16 3 N -0.38 -10.00 3.68 -348.06 -1.28 -11.28 16 4 C 0.06 1.61 11.36 83.54 0.95 2.56 16 5 C -0.23 -6.66 4.59 -20.14 -0.09 -6.76 16 6 C -0.04 -1.08 4.53 29.10 0.13 -0.94 16 7 C 0.49 19.28 7.69 87.66 0.67 19.96 16 8 O -0.59 -30.72 15.45 -3.05 -0.05 -30.76 16 9 N -0.61 -23.80 2.98 -818.89 -2.44 -26.24 16 10 C 0.10 2.67 6.34 86.36 0.55 3.21 16 11 C -0.13 -3.49 6.08 30.67 0.19 -3.31 16 12 C -0.11 -4.07 5.11 30.62 0.16 -3.92 16 13 C 0.04 2.03 2.25 -11.47 -0.03 2.00 16 14 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 15 C -0.54 -30.08 8.56 25.60 0.22 -29.86 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.57 5.30 84.65 0.45 1.02 16 18 N -0.92 -56.86 11.39 21.44 0.24 -56.61 16 19 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.13 6.37 5.39 86.35 0.47 6.83 16 24 C 0.05 1.39 11.96 85.24 1.02 2.41 16 25 N -0.33 -10.30 12.42 -57.02 -0.71 -11.01 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.12 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.13 2.31 7.95 -2.38 -0.02 2.30 16 33 H 0.12 2.30 7.69 -2.39 -0.02 2.28 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.12 2.01 5.94 -2.39 -0.01 2.00 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.07 4.38 5.12 -2.39 -0.01 4.37 16 42 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -82.44 349.77 4.81 -77.63 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.98 Total: 17.65 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 6.03 Total: -6.34 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -4.19 Total: -105.14 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.05 Total: -30.76 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -82.44 4.81 -77.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.523 kcal (2) G-P(sol) polarization free energy of solvation -82.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds