Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47007 * 2 1 4 4 C 1.46495 * 120.00381 * 262.19957 * 3 2 1 5 5 C 1.50697 * 109.47546 * 269.99905 * 4 3 2 6 6 H 1.08004 * 119.99572 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00334 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00059 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00303 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46996 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47310 * 120.00120 * 9 7 5 12 12 H 1.48498 * 109.47452 * 240.00650 * 9 7 5 13 13 C 1.34781 * 119.99704 * 82.20142 * 3 2 1 14 14 O 1.21683 * 119.99936 * 182.34493 * 13 3 2 15 15 C 1.46766 * 119.99848 * 2.06960 * 13 3 2 16 16 C 1.36695 * 126.88150 * 349.57533 * 15 13 3 17 17 N 1.33310 * 107.78845 * 179.67194 * 16 15 13 18 18 C 1.30963 * 109.75325 * 0.18852 * 17 16 15 19 19 N 1.34520 * 108.95257 * 0.30495 * 18 17 16 20 20 C 1.46482 * 126.52990 * 178.87883 * 19 18 17 21 21 C 1.53035 * 109.55551 * 28.21230 * 20 19 18 22 22 C 1.52821 * 109.63458 * 270.61122 * 21 20 19 23 23 C 1.52591 * 110.29634 * 61.25416 * 22 21 20 24 24 C 1.50942 * 125.82826 * 180.76782 * 18 17 16 25 25 H 1.09001 * 109.47400 * 57.14250 * 1 2 3 26 26 H 1.09008 * 109.46941 * 177.14368 * 1 2 3 27 27 H 1.09000 * 109.46761 * 297.13510 * 1 2 3 28 28 H 1.09008 * 109.46884 * 240.00741 * 2 1 3 29 29 H 1.08993 * 109.47461 * 120.00491 * 2 1 3 30 30 H 1.08996 * 109.47125 * 30.00268 * 4 3 2 31 31 H 1.08999 * 109.47042 * 149.99941 * 4 3 2 32 32 H 0.97001 * 120.00751 * 179.97438 * 8 7 5 33 33 H 1.07997 * 126.10463 * 359.77779 * 16 15 13 34 34 H 1.09005 * 109.45925 * 148.23617 * 20 19 18 35 35 H 1.08999 * 109.45753 * 268.18450 * 20 19 18 36 36 H 1.09002 * 109.44732 * 150.56362 * 21 20 19 37 37 H 1.09004 * 109.41923 * 30.64622 * 21 20 19 38 38 H 1.08995 * 109.33284 * 301.00443 * 22 21 20 39 39 H 1.08994 * 109.20295 * 181.41822 * 22 21 20 40 40 H 1.09001 * 109.45473 * 273.38117 * 23 22 21 41 41 H 1.09000 * 109.45444 * 153.43992 * 23 22 21 42 42 H 1.09000 * 109.50697 * 346.47556 * 24 18 17 43 43 H 1.09004 * 109.50313 * 106.60340 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4248 2.0145 -1.2569 5 6 3.8914 1.7625 -1.4951 6 1 4.4633 1.1877 -0.7817 7 6 4.5027 2.2649 -2.6242 8 7 3.8061 2.9644 -3.4931 9 14 6.3204 1.9519 -2.9198 10 1 6.8717 1.1440 -1.8024 11 1 6.4944 1.2138 -4.1965 12 1 7.0401 3.2487 -2.9956 13 6 2.0936 2.0693 1.1565 14 8 2.4586 3.2301 1.1511 15 6 1.7296 1.4204 2.4215 16 6 1.1155 0.2088 2.5750 17 7 0.9732 -0.0130 3.8818 18 6 1.4617 0.9967 4.5579 19 7 1.9332 1.9137 3.6940 20 6 2.5406 3.2022 4.0356 21 6 3.2031 3.1074 5.4118 22 6 2.1907 3.4764 6.4955 23 6 1.0133 2.5060 6.4724 24 6 1.5032 1.1155 6.0621 25 1 -0.3634 0.5576 -0.8632 26 1 -0.3633 -1.0265 -0.0512 27 1 -0.3633 0.4687 0.9146 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8458 1.5945 -2.0793 31 1 2.2456 3.0880 -1.1974 32 1 4.2362 3.3182 -4.2873 33 1 0.8031 -0.4517 1.7797 34 1 3.2913 3.4592 3.2882 35 1 1.7700 3.9728 4.0558 36 1 4.0482 3.7944 5.4558 37 1 3.5547 2.0887 5.5754 38 1 1.8273 4.4889 6.3202 39 1 2.6764 3.4311 7.4702 40 1 0.2694 2.8548 5.7561 41 1 0.5654 2.4550 7.4648 42 1 0.8579 0.3568 6.5050 43 1 2.5262 0.9725 6.4103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598692393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = 40.421061 kcal Electronic energy + Delta-G solvation = -24246.010674 eV Core-core repulsion = 20906.900253 eV Total energy + Delta-G solvation = -3339.110421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31825 -38.85134 -37.36397 -35.60233 -33.55881 -32.97387 -31.09017 -30.27396 -29.44384 -27.24999 -25.93107 -24.57193 -23.14624 -23.01086 -21.67629 -20.18668 -19.80196 -18.76051 -16.73416 -16.48143 -16.24440 -16.02484 -15.32840 -15.19530 -14.87497 -14.32782 -14.18340 -14.11074 -13.84697 -13.16001 -12.99537 -12.83674 -12.29801 -12.12109 -12.04313 -11.96721 -11.76928 -11.65283 -11.25367 -11.12379 -11.06002 -10.91275 -10.81277 -10.72769 -10.49250 -10.15919 -9.97149 -9.65452 -9.44014 -9.07308 -8.46280 -8.16414 -7.70481 -6.06956 -4.11858 1.70654 2.73209 3.06787 3.28155 3.35614 3.40027 3.86790 3.97509 4.24909 4.40893 4.43063 4.48913 4.58360 4.89151 5.00563 5.06064 5.16020 5.24931 5.28595 5.33327 5.39380 5.43198 5.54964 5.59840 5.63629 5.72158 5.75514 5.79773 5.83260 5.91059 6.02628 6.08132 6.22630 6.37750 6.54033 6.75679 7.04309 7.27132 7.40105 7.49818 7.89402 8.13212 8.19576 8.33884 8.84861 9.01279 9.53345 11.01073 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.004612 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.287136 B = 6070.110652 C = 6881.040184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 N -0.578 5.578 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.580 3.420 14 O -0.549 6.549 15 C -0.068 4.068 16 C -0.005 4.005 17 N -0.498 5.498 18 C 0.213 3.787 19 N -0.417 5.417 20 C 0.102 3.898 21 C -0.141 4.141 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.035 4.035 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.207 0.793 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -3.350 18.262 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 N -0.308 5.308 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.367 3.633 14 O -0.429 6.429 15 C -0.186 4.186 16 C -0.157 4.157 17 N -0.217 5.217 18 C -0.048 4.048 19 N -0.098 5.098 20 C -0.020 4.020 21 C -0.179 4.179 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.074 4.074 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.223 0.777 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.724 -3.153 18.423 19.547 hybrid contribution 1.368 0.581 -0.813 1.694 sum -4.356 -2.571 17.610 18.322 Atomic orbital electron populations 1.22482 0.96538 1.02212 1.03068 1.22035 0.93615 0.84419 1.03881 1.47937 1.61831 1.12871 1.08168 1.19361 0.95128 0.94668 0.77939 1.21468 0.94560 1.34106 1.06442 0.92359 1.24920 0.98384 0.94892 0.95814 1.69938 1.36164 1.35538 1.11649 0.86443 0.84950 0.78037 0.78006 1.19815 1.20884 1.20888 1.16745 0.78749 0.85714 0.82119 1.90748 1.48891 1.16604 1.86623 1.21183 1.12377 0.98617 0.86390 1.24037 1.01798 0.95598 0.94292 1.70112 1.22253 1.24824 1.04539 1.23313 1.00137 0.86976 0.94403 1.45195 1.43254 1.16133 1.05209 1.22114 0.99215 0.82448 0.98208 1.22056 0.98990 1.03730 0.93121 1.21619 0.95963 0.99599 0.98909 1.21603 0.98323 0.94027 1.02274 1.20193 1.03297 0.98608 0.85265 0.91647 0.91455 0.91831 0.89341 0.89894 0.94553 0.93637 0.92730 0.77736 0.87363 0.89645 0.89547 0.90242 0.91286 0.91173 0.91572 0.90494 0.88598 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.80 37.16 0.33 -2.26 16 2 C 0.08 1.42 5.64 -4.04 -0.02 1.39 16 3 N -0.58 -12.60 2.48 -176.58 -0.44 -13.03 16 4 C 0.25 6.47 5.14 -5.20 -0.03 6.44 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.58 12.86 7.57 -12.81 -0.10 12.77 16 14 O -0.55 -13.87 14.62 5.20 0.08 -13.79 16 15 C -0.07 -1.27 6.72 -82.20 -0.55 -1.83 16 16 C -0.01 -0.08 8.32 -17.47 -0.15 -0.23 16 17 N -0.50 -8.18 11.20 -10.47 -0.12 -8.29 16 18 C 0.21 3.11 6.83 -155.38 -1.06 2.05 16 19 N -0.42 -6.72 3.10 -109.84 -0.34 -7.06 16 20 C 0.10 1.41 5.78 -4.03 -0.02 1.39 16 21 C -0.14 -1.37 5.55 -26.81 -0.15 -1.52 16 22 C -0.12 -0.94 5.68 -27.03 -0.15 -1.09 16 23 C -0.12 -1.03 5.67 -26.92 -0.15 -1.18 16 24 C -0.03 -0.34 5.54 -27.75 -0.15 -0.50 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.06 0.92 6.00 -51.93 -0.31 0.61 16 28 H 0.09 1.48 8.01 -51.92 -0.42 1.07 16 29 H 0.08 1.30 4.85 -51.93 -0.25 1.05 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.05 1.33 7.39 -51.93 -0.38 0.95 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.21 3.02 3.20 -52.49 -0.17 2.85 16 34 H 0.11 1.78 6.80 -51.93 -0.35 1.43 16 35 H 0.09 1.13 7.82 -51.93 -0.41 0.73 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.80 5.68 -51.93 -0.30 0.51 16 38 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.66 7.84 -51.93 -0.41 0.26 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.76 6.30 -51.93 -0.33 0.43 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -33.74 332.66 -8.96 -42.70 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.24 Total: 1.45 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.63 Total: 1.87 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.16 Total: -54.03 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.74 -8.96 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598692393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.124 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds