Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47007 * 2 1 4 4 C 1.46495 * 120.00381 * 262.19957 * 3 2 1 5 5 C 1.50697 * 109.47546 * 269.99905 * 4 3 2 6 6 H 1.08004 * 119.99572 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00334 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00059 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00303 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46996 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47310 * 120.00120 * 9 7 5 12 12 H 1.48498 * 109.47452 * 240.00650 * 9 7 5 13 13 C 1.34781 * 119.99704 * 82.20142 * 3 2 1 14 14 O 1.21683 * 119.99936 * 182.34493 * 13 3 2 15 15 C 1.46766 * 119.99848 * 2.06960 * 13 3 2 16 16 C 1.36695 * 126.88150 * 349.57533 * 15 13 3 17 17 N 1.33310 * 107.78845 * 179.67194 * 16 15 13 18 18 C 1.30963 * 109.75325 * 0.18852 * 17 16 15 19 19 N 1.34520 * 108.95257 * 0.30495 * 18 17 16 20 20 C 1.46482 * 126.52990 * 178.87883 * 19 18 17 21 21 C 1.53035 * 109.55551 * 28.21230 * 20 19 18 22 22 C 1.52821 * 109.63458 * 270.61122 * 21 20 19 23 23 C 1.52591 * 110.29634 * 61.25416 * 22 21 20 24 24 C 1.50942 * 125.82826 * 180.76782 * 18 17 16 25 25 H 1.09001 * 109.47400 * 57.14250 * 1 2 3 26 26 H 1.09008 * 109.46941 * 177.14368 * 1 2 3 27 27 H 1.09000 * 109.46761 * 297.13510 * 1 2 3 28 28 H 1.09008 * 109.46884 * 240.00741 * 2 1 3 29 29 H 1.08993 * 109.47461 * 120.00491 * 2 1 3 30 30 H 1.08996 * 109.47125 * 30.00268 * 4 3 2 31 31 H 1.08999 * 109.47042 * 149.99941 * 4 3 2 32 32 H 0.97001 * 120.00751 * 179.97438 * 8 7 5 33 33 H 1.07997 * 126.10463 * 359.77779 * 16 15 13 34 34 H 1.09005 * 109.45925 * 148.23617 * 20 19 18 35 35 H 1.08999 * 109.45753 * 268.18450 * 20 19 18 36 36 H 1.09002 * 109.44732 * 150.56362 * 21 20 19 37 37 H 1.09004 * 109.41923 * 30.64622 * 21 20 19 38 38 H 1.08995 * 109.33284 * 301.00443 * 22 21 20 39 39 H 1.08994 * 109.20295 * 181.41822 * 22 21 20 40 40 H 1.09001 * 109.45473 * 273.38117 * 23 22 21 41 41 H 1.09000 * 109.45444 * 153.43992 * 23 22 21 42 42 H 1.09000 * 109.50697 * 346.47556 * 24 18 17 43 43 H 1.09004 * 109.50313 * 106.60340 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4248 2.0145 -1.2569 5 6 3.8914 1.7625 -1.4951 6 1 4.4633 1.1877 -0.7817 7 6 4.5027 2.2649 -2.6242 8 7 3.8061 2.9644 -3.4931 9 14 6.3204 1.9519 -2.9198 10 1 6.8717 1.1440 -1.8024 11 1 6.4944 1.2138 -4.1965 12 1 7.0401 3.2487 -2.9956 13 6 2.0936 2.0693 1.1565 14 8 2.4586 3.2301 1.1511 15 6 1.7296 1.4204 2.4215 16 6 1.1155 0.2088 2.5750 17 7 0.9732 -0.0130 3.8818 18 6 1.4617 0.9967 4.5579 19 7 1.9332 1.9137 3.6940 20 6 2.5406 3.2022 4.0356 21 6 3.2031 3.1074 5.4118 22 6 2.1907 3.4764 6.4955 23 6 1.0133 2.5060 6.4724 24 6 1.5032 1.1155 6.0621 25 1 -0.3634 0.5576 -0.8632 26 1 -0.3633 -1.0265 -0.0512 27 1 -0.3633 0.4687 0.9146 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8458 1.5945 -2.0793 31 1 2.2456 3.0880 -1.1974 32 1 4.2362 3.3182 -4.2873 33 1 0.8031 -0.4517 1.7797 34 1 3.2913 3.4592 3.2882 35 1 1.7700 3.9728 4.0558 36 1 4.0482 3.7944 5.4558 37 1 3.5547 2.0887 5.5754 38 1 1.8273 4.4889 6.3202 39 1 2.6764 3.4311 7.4702 40 1 0.2694 2.8548 5.7561 41 1 0.5654 2.4550 7.4648 42 1 0.8579 0.3568 6.5050 43 1 2.5262 0.9725 6.4103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598692393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = 19.283366 kcal Electronic energy + Delta-G solvation = -24246.927273 eV Core-core repulsion = 20906.900253 eV Total energy + Delta-G solvation = -3340.027020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.57595 -40.50301 -38.34218 -37.21260 -35.06203 -34.66143 -32.52533 -31.50523 -30.72425 -29.02281 -27.12080 -25.69340 -24.83294 -24.47721 -23.11853 -21.19412 -20.83984 -20.18188 -18.68919 -18.12605 -17.62690 -17.21064 -16.98992 -16.37287 -16.14443 -15.86243 -15.57616 -15.38514 -14.94244 -14.69602 -14.35038 -13.90545 -13.76302 -13.66234 -13.35745 -13.19428 -13.13591 -12.91519 -12.72820 -12.66761 -12.52883 -12.25622 -12.00906 -11.87887 -11.74365 -11.70358 -11.48749 -11.26427 -10.77779 -10.69848 -10.67284 -9.62589 -9.39688 -8.25524 -6.40609 0.31925 1.34937 1.36484 1.45623 1.50443 1.78695 2.24414 2.36210 2.42823 3.04093 3.27707 3.45037 3.61359 3.67007 3.83771 4.02337 4.03606 4.16915 4.22857 4.28194 4.31439 4.32546 4.54399 4.57206 4.74771 4.81094 4.86369 4.86917 4.90305 4.97565 5.03823 5.12666 5.16992 5.20718 5.28315 5.34008 5.36383 5.46605 5.52318 5.78133 6.01153 6.10827 6.58421 6.67995 6.86117 7.18962 7.34466 8.81915 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.004612 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.287136 B = 6070.110652 C = 6881.040184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 N -0.584 5.584 4 C 0.265 3.735 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.267 1.267 12 H -0.280 1.280 13 C 0.574 3.426 14 O -0.597 6.597 15 C -0.110 4.110 16 C 0.015 3.985 17 N -0.517 5.517 18 C 0.231 3.769 19 N -0.423 5.423 20 C 0.099 3.901 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.036 4.036 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.223 0.777 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -5.005 20.928 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.042 4.042 3 N -0.313 5.313 4 C 0.144 3.856 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.192 1.192 12 H -0.206 1.206 13 C 0.363 3.637 14 O -0.480 6.480 15 C -0.226 4.226 16 C -0.138 4.138 17 N -0.237 5.237 18 C -0.031 4.031 19 N -0.104 5.104 20 C -0.022 4.022 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.075 4.075 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.472 -4.838 21.099 22.327 hybrid contribution 1.224 1.094 -1.584 2.281 sum -4.248 -3.744 19.515 20.320 Atomic orbital electron populations 1.22397 0.94014 1.04536 1.02264 1.22339 0.95621 0.81681 1.04609 1.47913 1.61932 1.14667 1.06831 1.18830 0.94496 0.92410 0.79868 1.21678 0.95557 1.34442 1.06631 0.93149 1.25817 1.03220 0.94346 0.95392 1.70047 1.38224 1.36111 1.12145 0.85360 0.78913 0.78048 0.78429 1.19424 1.19175 1.20581 1.17236 0.77860 0.85289 0.83332 1.90702 1.51148 1.18675 1.87460 1.20747 1.15819 0.99975 0.86073 1.24301 0.99777 0.94574 0.95154 1.70202 1.23566 1.25706 1.04187 1.24368 0.96987 0.85440 0.96264 1.45405 1.43415 1.16964 1.04571 1.22215 0.98413 0.81790 0.99800 1.22074 0.99751 1.04219 0.90971 1.21622 0.95207 0.99491 0.99201 1.21610 0.98070 0.92863 1.03231 1.20520 1.05111 1.00219 0.81626 0.92887 0.87383 0.92219 0.89363 0.88292 0.95066 0.98079 0.92266 0.76131 0.91007 0.89778 0.88238 0.90168 0.91020 0.88247 0.93795 0.87415 0.86989 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 8.80 71.98 0.63 -4.09 16 2 C 0.08 2.68 5.64 86.38 0.49 3.17 16 3 N -0.58 -26.72 2.48 -830.78 -2.06 -28.78 16 4 C 0.26 14.66 5.14 85.63 0.44 15.10 16 5 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.67 5.46 84.65 0.46 1.13 16 8 N -0.93 -56.11 13.29 21.44 0.28 -55.82 16 9 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.57 26.94 7.57 86.47 0.65 27.60 16 14 O -0.60 -32.57 14.62 -4.30 -0.06 -32.63 16 15 C -0.11 -4.20 6.72 40.04 0.27 -3.93 16 16 C 0.02 0.50 8.32 84.11 0.70 1.20 16 17 N -0.52 -16.09 11.20 -187.05 -2.10 -18.19 16 18 C 0.23 6.36 6.83 138.24 0.94 7.30 16 19 N -0.42 -13.69 3.10 -501.42 -1.55 -15.24 16 20 C 0.10 2.83 5.78 86.39 0.50 3.33 16 21 C -0.13 -2.34 5.55 30.55 0.17 -2.17 16 22 C -0.12 -1.40 5.68 30.40 0.17 -1.23 16 23 C -0.12 -1.57 5.67 30.47 0.17 -1.40 16 24 C -0.04 -0.59 5.54 29.94 0.17 -0.43 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.06 1.68 6.00 -2.39 -0.01 1.66 16 28 H 0.09 2.97 8.01 -2.38 -0.02 2.95 16 29 H 0.10 3.03 4.85 -2.39 -0.01 3.02 16 30 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 31 H 0.00 0.07 7.39 -2.39 -0.02 0.05 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.22 6.19 3.20 -2.91 -0.01 6.18 16 34 H 0.07 2.56 6.80 -2.38 -0.02 2.55 16 35 H 0.08 2.34 7.82 -2.39 -0.02 2.32 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.42 5.68 -2.39 -0.01 1.40 16 38 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.04 0.79 7.84 -2.39 -0.02 0.77 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 1.41 6.30 -2.38 -0.02 1.39 16 Total: -1.00 -77.70 332.66 3.57 -74.13 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.02 Total: 15.40 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.01 Total: 13.84 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -5.42 Total: -118.03 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.06 Total: -32.63 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -77.70 3.57 -74.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598692393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.416 kcal (2) G-P(sol) polarization free energy of solvation -77.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds