Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47246 * 2 1 4 4 C 1.46500 * 120.00024 * 275.96223 * 3 2 1 5 5 C 1.50700 * 109.46686 * 275.26165 * 4 3 2 6 6 H 1.08000 * 120.00252 * 4.82659 * 5 4 3 7 7 C 1.37880 * 120.00112 * 184.83005 * 5 4 3 8 8 N 1.31516 * 120.00369 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46981 * 90.00447 * 9 7 5 11 11 H 1.48504 * 109.47442 * 210.00236 * 9 7 5 12 12 H 1.48504 * 109.47498 * 330.00570 * 9 7 5 13 13 C 1.34773 * 120.00025 * 95.95601 * 3 2 1 14 14 O 1.21279 * 119.99807 * 3.29683 * 13 3 2 15 15 C 1.50701 * 119.99999 * 183.29697 * 13 3 2 16 16 H 1.08998 * 109.71279 * 33.38139 * 15 13 3 17 17 C 1.53373 * 109.71591 * 154.02913 * 15 13 3 18 18 C 1.53028 * 109.74776 * 170.32405 * 17 15 13 19 19 H 1.09003 * 109.42682 * 48.34850 * 18 17 15 20 20 C 1.52999 * 109.43000 * 168.19251 * 18 17 15 21 21 C 1.53389 * 109.72067 * 288.27272 * 18 17 15 22 22 C 1.50877 * 108.19256 * 50.53567 * 21 18 17 23 23 C 1.34575 * 128.32448 * 163.44180 * 22 21 18 24 24 N 1.35194 * 107.61908 * 180.13235 * 23 22 21 25 25 H 0.97003 * 126.00754 * 179.97438 * 24 23 22 26 26 N 1.40317 * 107.99368 * 359.96275 * 24 23 22 27 27 C 1.30132 * 108.12079 * 359.95727 * 26 24 23 28 28 H 1.09007 * 109.47001 * 62.73657 * 1 2 3 29 29 H 1.08999 * 109.47250 * 182.73512 * 1 2 3 30 30 H 1.08997 * 109.47557 * 302.74019 * 1 2 3 31 31 H 1.09002 * 109.47033 * 239.99838 * 2 1 3 32 32 H 1.08999 * 109.47293 * 119.99587 * 2 1 3 33 33 H 1.08998 * 109.47305 * 35.25535 * 4 3 2 34 34 H 1.08996 * 109.47364 * 155.26264 * 4 3 2 35 35 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.42262 * 290.40765 * 17 15 13 37 37 H 1.09004 * 109.42534 * 50.24058 * 17 15 13 38 38 H 1.09002 * 109.46921 * 180.25679 * 20 18 17 39 39 H 1.09001 * 109.46938 * 300.25528 * 20 18 17 40 40 H 1.08994 * 109.46903 * 60.25216 * 20 18 17 41 41 H 1.09003 * 109.71401 * 290.86540 * 21 18 17 42 42 H 1.08997 * 109.71716 * 170.21097 * 21 18 17 43 43 H 1.08002 * 126.19412 * 0.09269 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1383 2.1158 -1.2619 5 6 3.4621 1.7943 -1.9062 6 1 4.1118 1.0531 -1.4648 7 6 3.8441 2.4467 -3.0593 8 7 4.9991 2.1659 -3.6220 9 14 2.7202 3.7284 -3.8232 10 1 3.0374 5.0647 -3.2582 11 1 2.9238 3.7519 -5.2940 12 1 1.3059 3.3878 -3.5246 13 6 2.3572 1.9762 1.1609 14 8 2.3148 1.3495 2.1984 15 6 2.7886 3.4201 1.1697 16 1 2.2505 3.9694 0.3972 17 6 2.4984 4.0384 2.5429 18 6 3.1486 5.4206 2.6355 19 1 2.9042 5.9967 1.7431 20 6 2.6195 6.1502 3.8718 21 6 4.6712 5.2700 2.7445 22 6 5.1342 4.3527 1.6397 23 6 6.3820 4.1801 1.1663 24 7 6.3206 3.2618 0.1760 25 1 7.0693 2.9384 -0.3491 26 7 4.9834 2.8585 0.0412 27 6 4.2741 3.5093 0.9169 28 1 -0.3633 0.4708 -0.9136 29 1 -0.3634 -1.0265 0.0490 30 1 -0.3634 0.5558 0.8643 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3285 1.8240 -1.9305 34 1 2.0799 3.1864 -1.0660 35 1 5.2677 2.6246 -4.4334 36 1 1.4209 4.1350 2.6766 37 1 2.9034 3.3943 3.3235 38 1 3.0788 7.1367 3.9358 39 1 1.5375 6.2576 3.7949 40 1 2.8651 5.5763 4.7652 41 1 4.9298 4.8400 3.7122 42 1 5.1459 6.2452 2.6360 43 1 7.2715 4.6844 1.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598935188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = 33.262234 kcal Electronic energy + Delta-G solvation = -24930.583863 eV Core-core repulsion = 21591.163012 eV Total energy + Delta-G solvation = -3339.420851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96854 -39.07031 -36.70186 -35.17815 -32.72659 -32.20210 -30.52184 -30.25610 -29.15722 -27.49541 -25.76252 -24.45212 -22.61676 -22.19838 -20.76798 -20.27444 -18.65565 -17.79530 -17.10519 -16.79693 -16.28661 -15.49013 -15.04128 -14.41473 -14.04996 -13.87491 -13.83368 -13.52510 -13.24199 -12.98927 -12.70674 -12.47292 -12.17706 -12.15987 -12.10693 -11.80787 -11.60096 -11.52619 -11.14020 -10.94150 -10.74624 -10.62734 -10.42032 -10.38667 -10.26298 -10.16308 -9.75510 -9.30775 -9.06057 -8.62850 -8.39942 -7.82090 -7.63619 -6.00833 -3.92151 2.62518 3.20185 3.25337 3.31863 3.34846 3.44991 3.64551 3.96049 4.42073 4.81920 5.01690 5.09824 5.22639 5.29094 5.40438 5.49469 5.59426 5.68483 5.71533 5.81140 5.83599 5.87118 5.89203 5.94871 5.96510 6.11374 6.21988 6.25066 6.28591 6.33613 6.43652 6.52372 6.59041 6.63308 6.64725 6.73362 6.81281 7.24079 7.46485 7.62366 7.99057 8.24196 8.47423 8.60337 8.98011 9.15652 9.60739 11.12986 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.008019 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.425662 B = 3490.766208 C = 4563.456400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.583 5.583 4 C 0.205 3.795 5 C -0.490 4.490 6 H 0.086 0.914 7 C 0.079 3.921 8 N -0.896 5.896 9 Si 0.855 3.145 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.530 3.470 14 O -0.568 6.568 15 C -0.020 4.020 16 H 0.103 0.897 17 C -0.093 4.093 18 C -0.090 4.090 19 H 0.071 0.929 20 C -0.144 4.144 21 C -0.029 4.029 22 C -0.239 4.239 23 C 0.038 3.962 24 N -0.482 5.482 25 H 0.437 0.563 26 N -0.178 5.178 27 C 0.063 3.937 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 6.418 10.249 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.313 5.313 4 C 0.084 3.916 5 C -0.529 4.529 6 H 0.104 0.896 7 C -0.122 4.122 8 N -0.536 5.536 9 Si 0.683 3.317 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.317 3.683 14 O -0.449 6.449 15 C -0.043 4.043 16 H 0.120 0.880 17 C -0.132 4.132 18 C -0.109 4.109 19 H 0.089 0.911 20 C -0.201 4.201 21 C -0.067 4.067 22 C -0.251 4.251 23 C -0.107 4.107 24 N -0.190 5.190 25 H 0.280 0.720 26 N 0.002 4.998 27 C -0.107 4.107 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.218 5.268 9.661 11.225 hybrid contribution 0.108 1.343 -0.559 1.459 sum -2.110 6.612 9.102 11.446 Atomic orbital electron populations 1.22116 0.96929 1.01303 1.01743 1.21252 0.93114 0.83718 1.02951 1.47885 1.62348 1.13476 1.07556 1.19885 0.98694 0.91676 0.81307 1.21206 1.00842 1.23205 1.07649 0.89623 1.24684 0.94610 0.96218 0.96734 1.69870 1.20634 1.42799 1.20253 0.87192 0.82158 0.83272 0.79084 1.20405 1.21287 1.19187 1.20088 0.76348 0.88538 0.83312 1.90574 1.55770 1.66011 1.32503 1.19736 0.90400 0.94677 0.99503 0.87977 1.21493 1.00397 0.95657 0.95632 1.21156 0.95049 0.96067 0.98595 0.91062 1.21812 1.00721 0.99841 0.97748 1.19954 0.94445 0.96833 0.95503 1.19918 0.92393 1.07180 1.05613 1.21869 0.98766 0.96465 0.93641 1.46774 1.09204 1.33755 1.29229 0.71998 1.78289 0.85820 1.18721 1.16949 1.21654 0.95008 0.98082 0.95943 0.92666 0.92300 0.92975 0.90345 0.90674 0.95446 0.95500 0.93166 0.91483 0.90222 0.92835 0.92757 0.92630 0.91722 0.91858 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.23 37.16 0.38 -2.16 16 2 C 0.11 2.14 6.24 -4.04 -0.03 2.11 16 3 N -0.58 -12.47 2.46 -175.06 -0.43 -12.90 16 4 C 0.21 4.70 4.18 -5.19 -0.02 4.68 16 5 C -0.49 -12.92 7.29 -34.44 -0.25 -13.17 16 6 H 0.09 2.56 7.74 -52.49 -0.41 2.15 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -25.85 13.96 55.43 0.77 -25.08 16 9 Si 0.86 20.48 27.38 -169.99 -4.65 15.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.07 6.68 56.52 0.38 -5.69 16 13 C 0.53 11.37 6.70 -10.99 -0.07 11.29 16 14 O -0.57 -13.12 15.40 5.56 0.09 -13.03 16 15 C -0.02 -0.39 2.16 -92.61 -0.20 -0.59 16 16 H 0.10 1.94 6.07 -51.93 -0.32 1.62 16 17 C -0.09 -1.46 4.22 -26.52 -0.11 -1.57 16 18 C -0.09 -1.18 2.66 -90.40 -0.24 -1.42 16 19 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 20 C -0.14 -1.48 9.15 37.16 0.34 -1.14 16 21 C -0.03 -0.39 5.57 -27.60 -0.15 -0.54 16 22 C -0.24 -4.06 5.89 -104.99 -0.62 -4.68 16 23 C 0.04 0.60 11.95 -17.37 -0.21 0.39 16 24 N -0.48 -8.96 7.37 30.35 0.22 -8.73 16 25 H 0.44 7.25 8.96 -182.43 -1.64 5.61 16 26 N -0.18 -4.02 9.50 33.75 0.32 -3.70 16 27 C 0.06 1.29 6.40 -82.35 -0.53 0.77 16 28 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 32 H 0.07 1.46 7.21 -51.93 -0.37 1.09 16 33 H 0.03 0.62 7.48 -51.93 -0.39 0.23 16 34 H 0.03 0.61 4.77 -51.93 -0.25 0.37 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 37 H 0.08 1.36 7.48 -51.93 -0.39 0.97 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -32.09 340.56 -8.34 -40.43 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.98 Total: 6.05 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.81 Total: -4.00 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.89 Total: -50.41 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.65 Total: 15.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.09 -8.34 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598935188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.690 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds